Patents Assigned to Kosan Biosciences, Inc.
  • Patent number: 7241754
    Abstract: 2-Desmethyl ansamycins having a structure according to formula I, where R1, R2, R3, R4, R5 and R6 are as defined herein, and other 2-desmethyl ansamycins are useful as antiproliferative agents
    Type: Grant
    Filed: June 14, 2004
    Date of Patent: July 10, 2007
    Assignee: Kosan Biosciences, Inc.
    Inventors: Zong-Qiang Tian, Robert McDaniel, David C. Myles, Kedar Gautam Patel, Misty Piagentini, Zhan Wang
  • Patent number: 7189549
    Abstract: The invention relates to recombinant polyketide synthase enzymes, polyketide modifying proteins, and other proteins involved in polyketide biosynthesis or function. The invention provides domains of geldanamycin and herbimycin polyketide synthases, polynucleotides that encode such enzymes, and to host cells in which such encoding polynucleotides can be advantageously expressed.
    Type: Grant
    Filed: June 13, 2003
    Date of Patent: March 13, 2007
    Assignee: Kosan Biosciences, Inc.
    Inventors: Richard C. Hutchinson, Ralph C. Reid, Zhihao Hu, Andreas Rascher, Andreas Schirmer, Robert McDaniel
  • Patent number: 7176235
    Abstract: This invention relates to compounds of formula (I) and to pharmaceutically acceptable salts and solvates thereof, wherein R1, R2, R3, R4, R5, W, X, Y, and Ar are as defined herein. Compounds of formula (I) are useful in the treatment of diseases or conditions characterized by cellular hyperproliferation. This invention also relates to means for the preparation of compounds of formula (I); formulations containing compounds of formula (I); and methods for the use of said compounds and formulations in the treatment of a disease or condition characterized by cellular hyperproliferation, including cancer.
    Type: Grant
    Filed: May 12, 2004
    Date of Patent: February 13, 2007
    Assignee: Kosan Biosciences, Inc.
    Inventors: Gary Ashley, John R. Carney, Brian Metcalf
  • Patent number: 7138279
    Abstract: A transposon-based mutagenesis method for altering DNA in Sorangium and other Myxococcales host cells is provided, along with vectors and transposases for use in the method.
    Type: Grant
    Filed: August 13, 2003
    Date of Patent: November 21, 2006
    Assignee: Kosan Biosciences, Inc.
    Inventor: Bryan Julien
  • Patent number: 7129071
    Abstract: Recombinant nucleic acids that encode all or a portion of the epothilone polyketide synthase (PKS) are used to express recombinant PKS genes in host cells for the production of epothilones, epothilone derivatives, and polyketides that are useful as cancer chemotherapeutics, fungicides, and immunosuppressants.
    Type: Grant
    Filed: November 28, 2000
    Date of Patent: October 31, 2006
    Assignee: KOSAN Biosciences, Inc.
    Inventors: Bryan Julien, Leonard Katz, Chaitan Khosla, Li Tang, Rainer Ziermann
  • Publication number: 20060223151
    Abstract: Recombinant host cells of the suborder Cystobacterineae containing recombinant expression vectors that encode heterologous PKS genes can produce polyketides synthesized by the PKS enzymes encoded on those vectors at high levels.
    Type: Application
    Filed: September 20, 2005
    Publication date: October 5, 2006
    Applicant: Kosan Biosciences, Inc.
    Inventors: Bryan Julien, Leonard Katz, Chaitan Khosla
  • Publication number: 20060148052
    Abstract: Hybrid and novel polyketide synthases and polyketides are produced by use of a multiple vector system. The combinatorial possibilities offered by placing the various catalytic activities of PKS systems on separate vectors permits the construction of improved libraries of PKS and polyketides. In addition, polyketides can be produced in hosts that ordinarily do not produce polyketides by supplying, along with an expression system for the desired PKS, an expression system for holo ACP synthase.
    Type: Application
    Filed: October 27, 2005
    Publication date: July 6, 2006
    Applicant: Kosan Biosciences, Inc.
    Inventors: Philip Barr, Daniel Santi, Gary Ashley, Rainer Ziermann
  • Patent number: 7067286
    Abstract: Recombinant host cells of the suborder Cystobacterineae, genus Stizmatella, containing recombinant expression vectors that encode heterologous epothilone polyketide synthase (PKS) genes and can produce epothilones at high levels are provided.
    Type: Grant
    Filed: July 8, 2002
    Date of Patent: June 27, 2006
    Assignee: Kosan Biosciences, Inc.
    Inventors: Bryan Julien, Leonard Katz, Chaitan Khosla
  • Patent number: 7033818
    Abstract: Regions of sequence identity are recurrent in some modular polyketide synthase (PKS) gene clusters. Such sequences are potentially detrimental to the stability of PKS gene clusters and expression plasmids for the genes in the gene cluster. PKS gene and gene cluster stability can be improved, and reproducible polyketide titers can be obtained using those genes and gene clusters when the regions of sequence identity are reduced or eliminated by replacing one or more identical or homologous segments with non-homologous segments that encode the same or a substantially similar amino acid sequence.
    Type: Grant
    Filed: April 18, 2002
    Date of Patent: April 25, 2006
    Assignee: Kosan Biosciences, Inc.
    Inventors: Zhihao Hu, Robert McDaniel, Daniel V. Santi
  • Patent number: 7022825
    Abstract: Facile methods for preparing diketide and triketide thioesters are disclosed. The resulting thioesters may be used as intermediates in the synthesis of desired polyketides, and may contain functional groups which ultimately reside in side chains on the resulting polyketide and thus can be used further to manipulate the polyketide so as form derivatives. The polyketides produced may also be tailored by glycosylation, hydroxylation and the like. New polyketides and their derivatives and tailored forms are thereby produced.
    Type: Grant
    Filed: August 8, 2002
    Date of Patent: April 4, 2006
    Assignee: Kosan Biosciences, Inc.
    Inventors: Gary Ashley, Isaac C. Chan-Kai, Mark A. Burlingame
  • Patent number: 7011959
    Abstract: Recombinant E. coli host cells that comprise recombinant DNA expression vectors that drive expression of methylmalonyl CoA mutase from Propionibacterium shermanii or Streptomyces cinnamonensis as well as Propionibacterium shermanii epimerase can produce S-methylmalonyl CoA, a required substrate for the production of polyketides by most modular polyketide synthases and is not present in wild-type E. coli host cells.
    Type: Grant
    Filed: October 27, 2000
    Date of Patent: March 14, 2006
    Assignee: Kosan Biosciences, Inc.
    Inventors: Daniel Santi, Larry Peck, Linda Dayem, James Kealey
  • Patent number: 6998256
    Abstract: Methods are provided for purification of epothilone D and epothilone D analogs from epothilone producing cells such as, for example, Sorangium cellulosum and Myxococcus xanthus (recombinant). Epothilone can be purified from fermentation broth, for example by using resins, chromatography, and crystallization. Epothilone D can be crystallized from a binary solvent system in which water is the forcing solvent.
    Type: Grant
    Filed: September 19, 2001
    Date of Patent: February 14, 2006
    Assignee: Kosan Biosciences, Inc.
    Inventor: Robert L. Arslanian
  • Patent number: 6984515
    Abstract: A polyketide or glycosylated polyketide which has the formula: wherein R* is methyl or ethyl; each of R1-R6 is methyl; X1 is OH or H; and/or X2 is=O, OH or H; X3 is OH or H; X4 is OH or H; a pi bond is present at positions 10-11, 8-9, 4-5 and/or 2-3; and wherein at least one of the following characteristics is present: X1 is H; X2 is OH or H; X3 is H; X4 is H; or a pi bond is present at positions 10-11, 8-9, 4-5 and/or 2-3.
    Type: Grant
    Filed: May 9, 2001
    Date of Patent: January 10, 2006
    Assignees: The LeLand Stanford Junior University, Kosan Biosciences, Inc.
    Inventors: Chaitan Khosla, Gary Ashley, Camilla Kao, Robert McDaniel
  • Publication number: 20050272672
    Abstract: Compounds according to formula I wherein m is 0 or 1; X is and R1, R2, R3 R4, and R5 are as defined herein, are useful as anti-infective agents.
    Type: Application
    Filed: June 30, 2004
    Publication date: December 8, 2005
    Applicant: Kosan Biosciences, Inc.
    Inventors: Yong Li, Yandong Li, Yan Zhu, Chaitan Khosla, David Myles
  • Publication number: 20050256097
    Abstract: A pharmaceutical solution formulation containing 17-AAG in an amount of up to 15 mg/mL dissolved in a vehicle comprising (i) a first component that is ethanol, in an amount of between about 40 and about 60 volume %; (ii) a second component that is a polyethoxylated castor oil, in an amount of between about 15 to about 50 volume %; and (iii) a third component that is selected from the group consisting of propylene glycol, PEG 300, PEG 400, glycerol, and combinations thereof, in an amount of between about 0 and about 35 volume %.
    Type: Application
    Filed: May 5, 2005
    Publication date: November 17, 2005
    Applicant: Kosan Biosciences, Inc.
    Inventors: Ziyang Zhong, Peter Licari
  • Publication number: 20050227316
    Abstract: The invention provides strategies, methods, vectors, reagents, and systems for production of synthetic genes, production of libraries of such genes, and manipulation and characterization of the genes and corresponding encoded polypeptides. In one aspect, the synthetic genes can encode polyketide synthase polypeptides and facilitate production of therapeutically or commercially important polyketide compounds.
    Type: Application
    Filed: April 7, 2004
    Publication date: October 13, 2005
    Applicant: Kosan Biosciences, Inc.
    Inventors: Daniel Santi, Sarah Kodumal, Ralph Reid, Kedar Patel
  • Publication number: 20050215604
    Abstract: A combination therapy of an epothilone and carboplatin is effective for treating tumors.
    Type: Application
    Filed: March 23, 2005
    Publication date: September 29, 2005
    Applicant: Kosan Biosciences, Inc.
    Inventors: Yiqing Zhou, Robert Johnson
  • Patent number: 6946482
    Abstract: Motilide compounds having the formula (I), wherein R1, R2, R3, and R4 are as defined herein, and methods for their preparation and use in the treatment of diseases or conditions characterized by impaired gastric motility.
    Type: Grant
    Filed: August 26, 2003
    Date of Patent: September 20, 2005
    Assignee: Kosan Biosciences, Inc.
    Inventors: Daniel V. Santi, Brian Metcalf, Christopher Carreras, Yaoquan Liu, Robert McDaniel, Eduardo J. Rodriguez
  • Publication number: 20050203174
    Abstract: Diseases of cellular proliferation can be treated with a combination of leptomycin B and a chemotherapeutic co-agent, for instance an anti-mitotic agent, a DNA cleaver, an alkylating agent, a DNA crosslinking agent, a DNA intercalator, an HSP90 inhibitor, a topoisomerase I inhibitor, a topoisomerase II inhibitor, an immunosuppressant, an anti-metabolite, a COX-2 inhibitor, a nucleoside (purine or pyrimidine) analog, a Ras inhibitor, a farnesyl transferase inhibitor, or a histone deacetylase inhibitor.
    Type: Application
    Filed: February 14, 2005
    Publication date: September 15, 2005
    Applicant: Kosan Biosciences, Inc.
    Inventors: Daniel Santi, Yiqing Zhou
  • Patent number: RE39762
    Abstract: Polyketide compounds of the formula but not including FK-506, FK-520, 18-hydroxy-FK520 and 18-hydroxy-FK-506.
    Type: Grant
    Filed: December 9, 2005
    Date of Patent: August 7, 2007
    Assignee: Kosan Biosciences, Inc.
    Inventors: Christopher Reeves, Daniel Chu, Chaitan Khosla, Daniel Santi, Kai Wu