Patents by Inventor ANDREW BAUMGARTEN

ANDREW BAUMGARTEN has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20220090215
    Abstract: Methods and compositions to impute or predict genotype, haplotype, molecular phenotype, agronomic phenotypes, and/or coancestry are provided. Methods and compositions provided include using latent space to generate latent space representations or latent vectors that are independent of underlying genotypic or phenotypic data. The methods may include generating a universal latent space representation by encoding discrete or continuous variables derived from genotypic or phenotypic data into latent vectors through a machine learning-based encoder framework. Provided herein are universal methods of parametrically representing genotypic or phenotypic data obtained from one or more populations or sample sets to impute or predict a genotype or phenotype of interest.
    Type: Application
    Filed: October 1, 2021
    Publication date: March 24, 2022
    Applicant: PIONEER HI-BRED INTERNATIONAL, INC.
    Inventors: ANDREW BAUMGARTEN, JUSTIN P GERKE, ELI RODGERS-MELNICK
  • Patent number: 11174522
    Abstract: Methods and compositions to impute or predict genotype, haplotype, molecular phenotype, agronomic phenotypes, and/or coancestry are provided. Methods and compositions provided include using latent space to generate latent space representations or latent vectors that are independent of underlying genotypic or phenotypic data. The methods may include generating a universal latent space representation by encoding discrete or continuous variables derived from genotypic or phenotypic data into latent vectors through a machine learning-based encoder framework. Provided herein are universal methods of parametrically representing genotypic or phenotypic data obtained from one or more populations or sample sets to impute or predict a genotype or phenotype of interest.
    Type: Grant
    Filed: March 10, 2020
    Date of Patent: November 16, 2021
    Inventors: Andrew Baumgarten, Justin P Gerke, Eli Rodgers-Melnick
  • Publication number: 20210210163
    Abstract: Systems and methods for improving marker-trait associations and for improving trait introgression precision while reducing trait introgression time are disclosed. Genes responsible for recombination are edited to reduce function, and thus increase recombination rates. Increased recombination rates allow more precise quantification of marker-trait associations, and more precise and faster trait introgression. Methods and compositions useful for selecting an organism with a trait of interest are provided herein. Candidate organisms identified and/or selected by any of the methods described above are also of interest.
    Type: Application
    Filed: May 24, 2019
    Publication date: July 8, 2021
    Applicant: PIONEER HI-BRED INTERNATIONAL, INC.
    Inventors: ANDREW BAUMGARTEN, JIN LI, GREGORY D MAY
  • Publication number: 20200291489
    Abstract: Methods and compositions to impute or predict genotype, haplotype, molecular phenotype, agronomic phenotypes, and/or coancestry are provided. Methods and compositions provided include using latent space to generate latent space representations or latent vectors that are independent of underlying genotypic or phenotypic data. The methods may include generating a universal latent space representation by encoding discrete or continuous variables derived from genotypic or phenotypic data into latent vectors through a machine learning-based encoder framework. Provided herein are universal methods of parametrically representing genotypic or phenotypic data obtained from one or more populations or sample sets to impute or predict a genotype or phenotype of interest.
    Type: Application
    Filed: March 10, 2020
    Publication date: September 17, 2020
    Applicant: PIONEER HI-BRED INTERNATIONAL, INC.
    Inventors: ANDREW BAUMGARTEN, JUSTIN P. GERKE, ELI RODGERS-MELNICK
  • Publication number: 20200168299
    Abstract: Systems and methods are described for designing nucleotide guides for site-specific genome editing that also minimize off-target genome edits. Systems and methods are described for using these nucleotide guides to edit specific genomic regions and minimize edits to genomic regions not intended for editing.
    Type: Application
    Filed: July 27, 2018
    Publication date: May 28, 2020
    Applicant: PIONEER HI-BRED INTERNATIONAL, INC.
    Inventors: ANDREW BAUMGARTEN, JUSTIN P GERKE, HUI GUO, MATTHEW G KING, HAINING LIN, ROBERT B MEELEY, BROOKE PETERSON-BURCH, YUN ZHANG