Abstract: Methods and apparatus for storing data about biological entities are provided. A computing device can receive a plurality of data items about a biological entity from a plurality of sources. The computing device can verify each data item of the plurality of data items using the computing device by at least: determining a source of the data item from among the plurality of sources, determining a provenance for the data item associated with the source of the data item, and verifying that the data item is associated with the biological entity based at least on the provenance for the data item associated with the source of the data item. After verifying that a particular data item is associated with the biological entity, the computing device can store the particular data item in a data log associated with the biological entity.

Abstract: Methods and apparatus for storing data about biological entities are provided. A computing device can receive a plurality of data items about a biological entity from a plurality of sources. The computing device can verify each data item of the plurality of data items using the computing device by at least: determining a source of the data item from among the plurality of sources, determining a provenance for the data item associated with the source of the data item, and verifying that the data item is associated with the biological entity based at least on the provenance for the data item associated with the source of the data item. After verifying that a particular data item is associated with the biological entity, the computing device can store the particular data item in a data log associated with the biological entity.

Abstract: Methods and apparatus for storing data about biological entities are provided. A computing device can receive a plurality of data items about a biological entity from a plurality of sources. The computing device can verify each data item of the plurality of data items using the computing device by at least: determining a source of the data item from among the plurality of sources, determining a provenance for the data item associated with the source of the data item, and verifying that the data item is associated with the biological entity based at least on the provenance for the data item associated with the source of the data item. After verifying that a particular data item is associated with the biological entity, the computing device can store the particular data item in a data log associated with the biological entity.

Abstract: Methods and apparatus for storing data about biological entities are provided. A computing device can receive a plurality of data items about a biological entity from a plurality of sources. The computing device can verify each data item of the plurality of data items using the computing device by at least: determining a source of the data item from among the plurality of sources, determining a provenance for the data item associated with the source of the data item, and verifying that the data item is associated with the biological entity based at least on the provenance for the data item associated with the source of the data item. After verifying that a particular data item is associated with the biological entity, the computing device can store the particular data item in a data log associated with the biological entity.

Abstract: A set of development tools is provided as part of an integrated development environment for supporting aspect-oriented programming such that aspects may easily be defined for embodying functionality which cross-cuts main program functionality in such a way that aspects transparently force their behavior on the main program. The editor and debugger of the integrated development environment embody functionality for accommodating this transparency.

Abstract: An aspect oriented system for implementing system monitoring and tracing is provided in which the monitoring and tracing functionality needs not be coded into the resources being monitored or traced. Rather, an aspect is provided which encapsulates the monitoring/tracing behavior. This behavior may easily and transparently be forced onto the resource by compiling the object class for the resource along with the monitoring/tracing aspect. When the monitoring/tracing is no longer needed, it is removed simply by recompiling the resource object classes without the aspect.

Abstract: The concept of a general purpose aspect is introduced where an aspect transparently forces cross-cutting behavior on object classes and other software entities. A reusable aspect is further described for use as part of an aspect library.

Abstract: An aspect oriented system for implementing the Design by Contract software development methodology is provided in which preconditions and postconditions defining the contract need not be coded into the program modules being developed. Rather, an aspect is provided which encapsulates these preconditions and postconditions. This behavior may easily and transparently be forced onto the resource by compiling the object class for the program module along with the contract aspect. When the software program in which the program modules is used is no longer needed, the preconditions and postconditions are removed simply by recompiling the resource object classes without the aspect.