Patents by Inventor Huanming Yang

Huanming Yang has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20230032409
    Abstract: A method for information encoding and decoding, and method for information storage and interpretation are provided. The information encoding method includes: first binary information and second binary information as well as a first encoding rule and a second encoding rule are obtained; a first output candidate symbol corresponding to a current input of the first binary information is obtained and a second output candidate symbol corresponding to a current input of the second binary information is obtained, and an intersection of the first output candidate symbol and the second output candidate symbol is taken as an output corresponding to a current input; and an output symbol corresponding to each binary bit of the first binary information and the second binary information is sequentially determined through the first encoding rule and the second encoding rule, as to obtain an encoding sequence formed by a plurality of the output symbols.
    Type: Application
    Filed: September 24, 2019
    Publication date: February 2, 2023
    Inventors: Shihong CHEN, Xiaoluo HUANG, Zhi PING, Tao LIN, Chen CHAI, Yue SHEN, Xun XU, Huanming YANG
  • Patent number: 11371074
    Abstract: Disclosed are a method and a system for determining genome copy number variation, which relates to the technical field of bioinformatics. The method and the system have clinical feasibility, and can precisely detect a micro-deletion/micro-duplication area of 0.5 M under the situation of using data of about 50 M.
    Type: Grant
    Filed: January 29, 2018
    Date of Patent: June 28, 2022
    Assignee: BGI Genomics Co., Ltd.
    Inventors: Xuchao Li, Shengpei Chen, Fang Chen, Weiwei Xie, Jian Wang, Jun Wang, Huanming Yang, Xiuqing Zhang
  • Publication number: 20220064705
    Abstract: Disclosed are a method and device for fixed-point editing of a nucleotide sequence stored with data.
    Type: Application
    Filed: December 26, 2018
    Publication date: March 3, 2022
    Inventors: Zhi PING, Xiaoluo HUANG, Shihong CHEN, Chen CHAI, Yue SHEN, Xun XU, Huanming YANG
  • Patent number: 10839295
    Abstract: A method for encoding and storing text information using DNA as a storage medium, a decoding method therefor and an application thereof. The method for using DNA to store text information comprises: encoding characters into computer binary digits by means of encoding, and converting the binary digits into DNA sequences by means of transcoding; and artificially synthesizing the DNA sequences encoded with character information, positioning the characters by means of a designed ligation adapter, and assembling the DNA sequences encoded with the character information according to a pre-set order. The method for using DNA to store text information has the advantages of a small storage volume, a large storage capacity, a strong stability and low maintenance costs.
    Type: Grant
    Filed: May 4, 2016
    Date of Patent: November 17, 2020
    Assignee: BGI SHENZHEN
    Inventors: Yue Shen, Tai Chen, Longying Liu, Shihong Chen, Yun Wang, Huanming Yang
  • Publication number: 20200321079
    Abstract: The present disclosure relates to an encoding/decoding method, an encoder/decoder, and a storage method and device, which relates to the technical field of data storage. The encoding method comprises: determining a first bit of the encoded sequence based on a first bit of the first binary code sequence, a first bit of the second binary code sequence, and a reference symbol, the reference symbol being any one of the four different kinds of symbols; determining a current bit of the encoded sequence based on a current bit of the first binary code sequence, a current bit of the second binary code sequence, and a previous bit of the encoded sequence, the current bit of the encoded sequence being a bit other than the first bit of the encoded sequence.
    Type: Application
    Filed: April 24, 2020
    Publication date: October 8, 2020
    Inventors: Xiaoluo HUANG, Shihong CHEN, Tao LIN, Tai CHEN, Yue SHEN, Xun XU, Ye YIN, Huanming YANG
  • Patent number: 10395757
    Abstract: Provided is a parental genome assembly method, comprising: using the sequencing data of parental selfing line progeny population to assemble and perfect the parental genome data. Also provided is a device for implementing the method.
    Type: Grant
    Filed: December 2, 2011
    Date of Patent: August 27, 2019
    Assignee: BGI TECH SOLUTIONS CO., LTD.
    Inventors: Weiming He, Shancen Zhao, Xuemei Zhang, Yingrui Li, Jun Wang, Jian Wang, Huanming Yang
  • Publication number: 20190138909
    Abstract: A method for encoding and storing text information using DNA as a storage medium, a decoding method therefor and an application thereof. The method for using DNA to store text information comprises: encoding characters into computer binary digits by means of encoding, and converting the binary digits into DNA sequences by means of transcoding; and artificially synthesizing the DNA sequences encoded with character information, positioning the characters by means of a designed ligation adapter, and assembling the DNA sequences encoded with the character information according to a pre-set order. The method for using DNA to store text information has the advantages of a small storage volume, a large storage capacity, a strong stability and low maintenance costs.
    Type: Application
    Filed: May 4, 2016
    Publication date: May 9, 2019
    Inventors: Yue SHEN, Tai CHEN, Longying LIU, Shihong CHEN, Yun WANG, Huanming YANG
  • Publication number: 20180371539
    Abstract: Disclosed are a method of detecting a pre-determined event in a nucleic acid sample and a system thereof. The method of detecting the pre-determined event in the nucleic acid sample comprises the following steps: constructing a sequencing-library for the nucleic acid sample; sequencing the sequencing-library to obtain a sequencing result consisting of a plurality of sequencing data; determining the sequencing data from a pre-determined region; and determining an occurrence of the pre-determined event in the nucleic acid sample based on a composition of the sequencing data from the pre-determined region.
    Type: Application
    Filed: June 29, 2018
    Publication date: December 27, 2018
    Inventors: Hui Jiang, Fang Chen, Huijuan Ge, Peipei Li, Xuchao Li, Jian Wang, Jun Wang, Huanming Yang
  • Publication number: 20180320235
    Abstract: Provided are a method, system and computer readable medium for determining the base information in a predetermined area of a fetus genome, the method comprising following steps: constructing a sequence library for the DNA samples of the fetus genome; sequencing the sequence library to obtain the sequencing result of the fetus, the sequencing result of the fetus comprised of a plurality of sequencing data; and based on the sequencing result of the fetus, determining the base information in the predetermined area according to the hidden Markov model in conjunction with the genetic information of an individual related hereditarily to the fetus.
    Type: Application
    Filed: July 19, 2018
    Publication date: November 8, 2018
    Inventors: Shengpei Chen, Huijuan Ge, Xuchao Li, Shang Yi, Jian Wang, Jun Wang, Huanming Yang, Xiuqing Zhang
  • Patent number: 10100360
    Abstract: Biomarkers for diabetes and usages thereof are provided. And the biomarkers are nucleotides having polynucleotide sequences defined in SEQ ID NOs: 1-50.
    Type: Grant
    Filed: June 5, 2013
    Date of Patent: October 16, 2018
    Assignees: BGI SHENZHEN, BGI SHENZHEN CO., LIMITED
    Inventors: Shenghui Li, Qiang Feng, Zhuye Jie, Dongya Zhang, Junjie Qin, Jun Wang, Jian Wang, Huanming Yang
  • Publication number: 20180148765
    Abstract: Disclosed are a method and a system for determining genome copy number variation, which relates to the technical field of bioinformatics. The method and the system have clinical feasibility, and can precisely detect a micro-deletion/micro-duplication area of 0.5 M under the situation of using data of about 50 M.
    Type: Application
    Filed: January 29, 2018
    Publication date: May 31, 2018
    Inventors: Xuchao LI, Shengpei CHEN, Fang CHEN, Weiwei XIE, Jian WANG, Jun WANG, Huanming YANG, Xiuqing ZHANG
  • Patent number: 9857377
    Abstract: The present invention relates to a method for quantifying the relative content of a protein in a sample. The present invention also relates to a method for comprising the relative content of a protein in at least two samples.
    Type: Grant
    Filed: December 31, 2011
    Date of Patent: January 2, 2018
    Assignee: BGI TECH SOLUTIONS CO., LTD.
    Inventors: Haiyi Zhao, Dahai Jiang, Bo Wen, Jian Wang, Jun Wang, Huanming Yang, Jin Zi, Yan Ren, Siqi Liu
  • Patent number: 9567633
    Abstract: A method for detecting hydroxymethylation modification in nucleic acid comprises: glycosylating the nucleic acid, digesting with MspI, ligating the digested fragments to a biotin-labeled linker at both ends thereof, digesting with NlaIII; capturing the digested fragments using streptavidin magnetic beads to produce fragments having the biotin-labeled linker at one end and a CATG 4-base sticky end at the other end, wherein these fragments reveal modification information of their adjacent CCGG sites; ligating the CATG sticky end to a linker containing a recognition site of MmeI or Ecop15I, digesting with corresponding restriction endonuclease to produce short sequence fragments that can reveal modification information of their adjacent CCGG sites; and performing a tag number comparison to obtain information about methylation and hydroxymethylation modification relative levels. A use of the method is also provided.
    Type: Grant
    Filed: November 21, 2012
    Date of Patent: February 14, 2017
    Assignee: BGI TECH SOLUTIONS CO., LTD.
    Inventors: Fei Gao, Junwen Wang, Xiuqing Zhang, Huanming Yang
  • Patent number: 9238840
    Abstract: A method for analyzing a genome of a single cell is provided, and a kit is also provided. The method for analyzing the genome of the single cell may comprise separating and lysing the single cell to obtain a whole-genome DNA of the cell; subjecting the whole-genome DNA to a whole-genome amplification to obtain a whole-genome amplification product; performing a PCR amplification using the whole-genome amplification product as template and using housekeeping-gene-specific primers to detect the housekeeping gene of the whole-genome amplification product; and determining whether the whole genome amplification product meets a requirement for sequencing based on the detection result, wherein a uniform distribution of the amplification product in each chromosome is an indication of the amplification product meeting the requirement for sequencing.
    Type: Grant
    Filed: December 29, 2011
    Date of Patent: January 19, 2016
    Assignee: BGI-Shenzhen Co., Limited
    Inventors: Xuyang Yin, Li Bao, Xun Xu, Hanjie Wu, Xiaoyu Liu, Xiuqing Zhang, Huanming Yang
  • Publication number: 20150376697
    Abstract: A method and system to determine biomarkers related to abnormal condition in a subject are provided, comprising:sequencing nucleic acid samples from a first and a second subject in order to obtain multiple sequences respectively consisting of the first and the second sequencing results, wherein the first subject is in the abnormal condition; and the second subject is not in the abnormal condition; and the nucleic acid samples from the first and the second subject are both isolated from the samples of the same type; and the first and the second subject belong to the same species; and determining the biomarkers related to the abnormal condition in the subject based on the difference between the first and the second sequencing results.
    Type: Application
    Filed: August 22, 2012
    Publication date: December 31, 2015
    Applicants: BGI-Shenzhen, BGI Shenzhen, Co., Limited
    Inventors: Shenghui Li, Junjie Qin, Jianfeng Zhu, Dongya Zhang, Zhuye Jie, Jun Wang, Jian Wang, Huanming Yang
  • Publication number: 20150292011
    Abstract: Biomarkers for diabetes and usages thereof are provided. And the biomarkers are nucleotides having polynucleotide sequences defined in SEQ ID NOs: 1-50.
    Type: Application
    Filed: June 5, 2013
    Publication date: October 15, 2015
    Inventors: Shenghui Li, Qiang Feng, Zhuye Jie, Dongya Zhang, Junjie Qin, Jun Wang, Jian Wang, Huanming Yang
  • Publication number: 20150242565
    Abstract: The present teachings relate to analysis of a sample including a plurality of species. In one example, sequences of fragments of polynucleotides of the sample are obtained. A reference set comprising a plurality of sequences is obtained. An initial bin for each of the plurality of sequences of the reference set is determined based on a relative abundance of each sequence of the reference set in the sample. At least one final bin is obtained by modifying the initial bins for the plurality of sequences based on a model.
    Type: Application
    Filed: August 1, 2012
    Publication date: August 27, 2015
    Applicants: BGI Shenzhen, BGI Shenzhen Co., Limited
    Inventors: Shenghui Li, Qiang Feng, Junjie Qin, Jianfeng Zhu, Yuanlin Guan, Jun Wang, Jian Wang, Huanming Yang
  • Publication number: 20150211053
    Abstract: Biomarkers for diabetes and usages thereof are provided. And the biomarkers are Akkermansia muciniphila, Bacteroides intestinalis, Bacteroides sp. 20_3, Clostridium bolteae, Clostridium hathewayi, Clostridium ramosum, Clostridium sp. HGF2, Clostridium symbiosum, Desulfovibrio sp. 3_1_syn3, Eggerthella lenta, Escherichia coli, Clostridiales sp. SS3/4, Eubacterium rectale, Faecalibacterium prausnitzii, Haemophilus parainfluenzae, Roseburia intestinalis and Roseburia inulinivorans.
    Type: Application
    Filed: September 3, 2012
    Publication date: July 30, 2015
    Applicant: BGI-Shenzhen
    Inventors: Shenghui Li, Qiang Feng, Junjie Qin, Jianfeng Zhu, Dongya Zhang, Zhuye Jie, Jun Wang, Jian Wang, Huanming Yang
  • Publication number: 20150205913
    Abstract: Provided is a parental genome assembly method, comprising: using the sequencing data of parental selfing line progeny population to assemble and perfect the parental genome data. Also provided is a device for implementing the method.
    Type: Application
    Filed: December 2, 2011
    Publication date: July 23, 2015
    Applicant: BGI TECH SOLUTIONS CO., LTD.
    Inventors: Weiming He, Shancen Zhao, Xuemei Zhang, Yingrui Li, Jun Wang, Jian Wang, Huanming Yang
  • Publication number: 20150141290
    Abstract: The present invention relates to a method for quantifying the relative content of a protein in a sample. The present invention also relates to a method for comprising the relative content of a protein in at least two samples.
    Type: Application
    Filed: December 31, 2011
    Publication date: May 21, 2015
    Applicant: BGI TECH SOLUTIONS CO., LTD.
    Inventors: Haiyi Zhao, Dahai Jiang, Bo Wen, Jian Wang, Jun Wang, Huanming Yang