Patents Assigned to Applied Biosystems, Inc.
  • Patent number: 7485425
    Abstract: Methods and kits for detecting whether target nucleic acid sequences are present and/or quantitating target nucleic acid sequences are provided.
    Type: Grant
    Filed: October 2, 2006
    Date of Patent: February 3, 2009
    Assignee: Applied Biosystems Inc.
    Inventor: Eugene G. Spier
  • Patent number: 7485085
    Abstract: The present application relates to an apparatus and method for heat transfer for thermal cycling.
    Type: Grant
    Filed: January 23, 2004
    Date of Patent: February 3, 2009
    Assignee: Applied Biosystems Inc.
    Inventors: Janice G. Shigeura, legal representative, John Shigeura
  • Publication number: 20090027672
    Abstract: System and method for fluorescent light excitation and detection from samples to enhance the numerical aperture and/or reduce the cross-talk of the fluorescent light.
    Type: Application
    Filed: September 29, 2008
    Publication date: January 29, 2009
    Applicant: APPLIED BIOSYSTEMS INC.
    Inventors: Richard T. Reel, Eric S. Nordman
  • Patent number: 7482353
    Abstract: This invention is related to compositions and methods pertaining to PNA synthons, PNA oligomers and/or PNA/DNA Chimeras comprising a universal base.
    Type: Grant
    Filed: June 14, 2006
    Date of Patent: January 27, 2009
    Assignee: Applied Biosystems Inc.
    Inventors: Birendra K. Bhattacharya, James M. Coull
  • Patent number: 7483136
    Abstract: System and method for fluorescent light excitation and detection from samples to enhance the numerical aperture and/or reduce the cross-talk of the fluorescent light.
    Type: Grant
    Filed: February 16, 2006
    Date of Patent: January 27, 2009
    Assignee: Applied Biosystems Inc.
    Inventors: Richard T. Reel, Eric S. Nordman, Tomoyuki Sakai, Satoshi Takahashi, Ryoji Inaba
  • Patent number: 7480042
    Abstract: Systems, and components thereof, for detecting and/or analyzing light. These systems can include, among others, optical reference standards for calibrating, validating, and/or monitoring light-detection systems, before, during, and/or after sample analysis.
    Type: Grant
    Filed: June 30, 2005
    Date of Patent: January 20, 2009
    Assignee: Applied Biosystems Inc.
    Inventors: J. Michael Phillips, Aldrich N. K. Lau, Mark F. Oldham, Kevin S. Bodner, Steven J. Boege, Donald R. Sandell, David H. Tracy
  • Patent number: 7477381
    Abstract: An optical system for analyzing light from a plurality of samples is provided. The optical system includes a plurality of holders adapted to have samples located therein, a collection lens, a transmission grating, and a reimaging lens. The collection lens is configured to receive and substantially collimate light from the samples. The transmission grating is configured to spectrally disperse the substantially collimated light from the collection lens. The reimaging lens is configured to receive the light from the light dispersing element and direct the light onto a light detection device. A method of optically analyzing at least one sample is also provided.
    Type: Grant
    Filed: October 10, 2006
    Date of Patent: January 13, 2009
    Assignee: Applied Biosystems Inc.
    Inventor: Richard T. Reel
  • Publication number: 20080314431
    Abstract: An instrument for performing highly accurate PCR employing an assembly, a heated cover, and an internal computer, is provided. The assembly is made up of a sample block, a number of Peltier thermal electric devices, and a heat sink, clamped together. A control algorithm manipulates the current supplied to thermoelectric coolers such that the dynamic thermal performance of a block can be controlled so that pre-defined thermal profiles of sample temperature can be executed. The sample temperature is calculated instead of measured using a design specific model and equations. The control software includes calibration diagnostics which permit variation in the performance of thermoelectric coolers from instrument to instrument to be compensated for such that all instruments perform identically. The block/heat sink assembly can be changed to another of the same or different design.
    Type: Application
    Filed: August 22, 2008
    Publication date: December 25, 2008
    Applicant: Applied Biosystems, Inc.
    Inventors: John G. Atwood, Adrian Fawcett, Keith S. Ferrara, Paul M. Hetherington, Richard W. Noreiks, Douglas E. Olsen, John R. Widomski, Charles M. Wittmer
  • Patent number: 7468793
    Abstract: An apparatus for detecting analytes in a sample is provided. The apparatus includes: one or more channels having a detection zone; one or more irradiation sources disposed for irradiating the detection zone with non-coherent radiation; a detector array disposed for collecting light signals emitted from markers in the detection zone excited by the radiation, the detector array having an output; and a system coupled to the detector array for effecting time delay integration of the charges on the detector array corresponding to the light signals by accumulating the charges before reading the charges at the output of the detector array. Other apparatus and methods for detecting analytes in a sample are also provided.
    Type: Grant
    Filed: December 15, 2004
    Date of Patent: December 23, 2008
    Assignee: Applied Biosystems Inc.
    Inventors: Eric S. Nordman, Richard T. Reel, John S. Shigeura
  • Patent number: 7459068
    Abstract: A multi-capillary electrophoresis apparatus is provided for reducing errors during analysis caused by fluctuations in electrophoresis time among plural capillaries of the apparatus. The multi-capillary electrophoresis apparatus can contain a multi-capillary array that has a separation medium filled therein for isolating a sample. A detector component can be provided at a position remote from a sample injecting end of the array for acquiring information from the sample. A buffer container can be provided for holding a buffer solution into which the sample injecting end can be immersed. One or more temperature controlling component devices can be arranged for controlling a temperature of the buffer solution, of the detector component, or of both the buffer solution and the detector component.
    Type: Grant
    Filed: December 4, 2002
    Date of Patent: December 2, 2008
    Assignee: Applied Biosystems Inc.
    Inventors: Eric S. Nordman, Miho Ozawa, Masaya Kojima, Ryoji Inaba, Yoshitaka Kodama, Motohiro Yamazaki
  • Patent number: 7459070
    Abstract: An automated capillary zone electrophoretic system is disclosed. The system employs a capillary cartridge having a plurality of capillary tubes. The cartridge has a first array of capillary ends projecting from one side of a plate. The first array of capillary ends are spaced apart in substantially the same manner as the wells of a microtitre tray of standard size. This allows one to simultaneously perform capillary electrophoresis on samples present in each of the wells of the tray. The system includes a stacked, dual carrousel arrangement to eliminate cross-contamination resulting from reuse of the same buffer tray on consecutive executions from electrophoresis. The system also has a container connected to the detection end of the capillaries. The container is provided with valving which facilitate cleaning the capillaries, loading buffer into the capillaries, introducing samples to be electrophoresced into the capillaries, and performing capillary zone electrophoresis on the thus introduced samples.
    Type: Grant
    Filed: August 15, 2005
    Date of Patent: December 2, 2008
    Assignee: Applied Biosystems Inc.
    Inventors: Changsheng Liu, Thomas E. Kane, Qingbo Li
  • Patent number: 7460223
    Abstract: An inverted microplate for conducting a thermocycled amplification reaction of polynucleotide. The microplate can comprise a main body having a first and second surfaces and a plurality of wells disposed in the first surface. Each of the plurality of wells can comprise a well opening and a well bottom and be sized to receive an assay. A sealing cover can be operably coupled to the first surface of the main body to seal the well openings of the plurality of wells when the main body is inverted so that the assay is in contact with the sealing covering cover.
    Type: Grant
    Filed: March 22, 2005
    Date of Patent: December 2, 2008
    Assignee: Applied Biosystems Inc.
    Inventor: Ian A. Harding
  • Publication number: 20080285879
    Abstract: Methods, software, and apparatus for focusing an image in biological instrument are disclosed. Focusing elements are moved to various focus positions within a focus element travel range, and sample images are captured at the various focus positions. The sample images are resolved into subregions and an optimal focus position is determined based on the image intensity statistical dispersions within the identified subregions.
    Type: Application
    Filed: July 1, 2008
    Publication date: November 20, 2008
    Applicant: APPLIED BIOSYSTEMS INC.
    Inventors: Patrick D. Kinney, Howard G. King, Michael C. Pallas, Mark Naley
  • Patent number: 7452509
    Abstract: A microfluidic device is provided that can include at least one trap for receiving displaceable adhesion material displaced during a closing operation of a deformable valve. The trap can be formed as a recess or chamber in a substrate of the microfluidic device. A system including a deformer for opening such a valve is also provided as are methods of opening such a valve.
    Type: Grant
    Filed: March 24, 2004
    Date of Patent: November 18, 2008
    Assignee: Applied Biosystems Inc.
    Inventors: David M. Cox, Sean M. Desmond
  • Patent number: 7452712
    Abstract: A thermal cycling device for thermally cycling samples of biological material contained in a microcard having a top and bottom surface. The thermal cycling device can include a sample block having an upper surface configured for engaging the bottom surface of a microcard, a vacuum device, and a temperature control system operatively connected with the sample block. The upper surface of the sample block may include a plurality of channels, the channels defining spaces between the sample block and the bottom surface of a microcard that may be positioned thereon. The vacuum device may be in fluid communication with the sample block for drawing gas out of the spaces defined by the channels in the sample block. The vacuum device may be configured for substantially maintaining a vacuum between the sample block and microcard so that a retention force is imparted on the microcard to urge the microcard toward the sample block.
    Type: Grant
    Filed: July 30, 2002
    Date of Patent: November 18, 2008
    Assignee: Applied Biosystems Inc.
    Inventor: Adrian Fawcett
  • Patent number: 7452510
    Abstract: A multi-well microfiltration apparatus and method are provided and feature a manual touch-off system for transferring pendent drops hanging from discharge-conduits of a discharge-conduit array to respective receiving wells or receiving holes of a corresponding receiving array, with minimum or no cross-contamination between the discharge conduits, or the receiving wells or receiving holes. The manual touch-off is achieved by manually shifting a carriage that supports one of the arrays, into a position whereat pendent drops of fluid hanging from the distal ends of the discharge conduits contact the inner sidewalls of the corresponding receiving wells or receiving holes of the receiving array.
    Type: Grant
    Filed: January 24, 2006
    Date of Patent: November 18, 2008
    Assignee: Applied Biosystems Inc.
    Inventors: Todd A. Weinfield, Gary Lim, Donald R. Sandell, Kevin S. Bodner, Mark Borodkin, Mark Oldham, Jon Hoshizaki
  • Patent number: 7452672
    Abstract: Novel linkers for linking a donor dye to an acceptor dye in an energy transfer fluorescent dye are provided. These linkers facilitate the efficient transfer of energy between a donor and acceptor dye in an energy transfer dye. One of these linkers for linking a donor dye to an acceptor dye in an energy transfer fluorescent dye has the general structure R21Z1C(O)R22R28 where R21 is a C1-5 alkyl attached to the donor dye, C(O) is a carbonyl group, Z1 is either NH, sulfur or oxygen, R22 is a substituent which includes an alkene, diene, alkyne, a five and six membered ring having at least one unsaturated bond or a fused ring structure which is attached to the carbonyl carbon, and R28 includes a functional group which attaches the linker to the acceptor dye.
    Type: Grant
    Filed: December 29, 2006
    Date of Patent: November 18, 2008
    Assignee: Applied Biosystems Inc.
    Inventors: Linda G. Lee, Sandra L. Spurgeon, Barnett Rosenblum
  • Patent number: 7449149
    Abstract: Novel linkers for linking a donor dye to an acceptor dye in an energy transfer fluorescent dye are provided. These linkers facilitate the efficient transfer of energy between a donor and acceptor dye in an energy transfer dye. One of these linkers for linking a donor dye to an acceptor dye in an energy transfer fluorescent dye has the general structure R21Z1C(O)R22R28 where R21 is a C1-5 alkyl attached to the donor dye, C(O) is a carbonyl group, Z1 is either NH, sulfur or oxygen, R22 is a substituent which includes an alkene, diene, alkyne, a five and six membered ring having at least one unsaturated bond or a fused ring structure which is attached to the carbonyl carbon, and R28 includes a functional group which attaches the linker to the acceptor dye.
    Type: Grant
    Filed: December 29, 2006
    Date of Patent: November 11, 2008
    Assignee: Applied Biosystems Inc.
    Inventors: Linda G. Lee, Sandra L. Spurgeon, Barnett Rosenblum
  • Patent number: 7449298
    Abstract: Novel linkers for linking a donor dye to an acceptor dye in an energy transfer fluorescent dye are provided. These linkers faciliate the efficient transfer of energy between a donor and acceptor dye in an energy transfer dye. One of these linkers for linking a donor dye to an acceptor dye in an energy transfer fluorescent dye has the general structure R21Z1C(O)R22R28 where R21 is a C1-5 alkyl attached to the donor dye, C(O) is a carbonyl group, Z1 is either NH, sulfur or oxygen, R22 is a substituent which includes an alkene, diene, alkyne, a five and six membered ring having at least one unsaturated bond or a fused ring structure which is attached to the carbonyl carbon, and R28 includes a functional group which attaches the linker to the acceptor dye.
    Type: Grant
    Filed: December 29, 2006
    Date of Patent: November 11, 2008
    Assignee: Applied Biosystems Inc.
    Inventors: Linda G. Lee, Sandra L. Spurgeon, Barnett Rosenblum
  • Patent number: 7446288
    Abstract: A device is provided that comprises one or more fluid retainment regions each having at least one wall, and one or more loops in heat-transfer communication with the at least one wall. Each of the loops can comprise an electrical conductor that surrounds the same or a different fluid retainment region. A device is provided that comprises one or more fluid retainment regions each having particulates disposed therein. A system is provided that includes a platen adapted to hold a device including fluid retainment regions and one or more electrical conductors in heat-transfer communication with the fluid retainment regions. Methods of heating a sample are also provided.
    Type: Grant
    Filed: May 4, 2006
    Date of Patent: November 4, 2008
    Assignee: Applied Biosystems Inc.
    Inventors: Steven J. Boege, Mark F. Oldham, Marc Haberstroh, Stephen J. Gunstream, Adrian Fawcett, Douglas W. Grunewald