Abstract: Media beds containing worms living in an oxygenated aqueous environment are provided for the remediation of water containing excreted and other oxidizable organic or chemical waste. The media beds may include cultivated plant life in addition to the cultivated worm population for the uptake of nitrates, as well as other nutrients rendered soluble through digestion of the worms to remediate water to levels sufficient to be safely returned to the environment; alternatively the water may be remediated to higher nitrate levels in the absence of plants so that the water can be used in subsequent fertilization operations outside the waste treatment system. The system further includes cultivated microbial populations that may be present in the media beds and/or in separate bioreactors within the system.