Patents Assigned to Nanogen Recognomics GmbH
  • Patent number: 7833715
    Abstract: Methods of binding biomolecules to a substrate are provided that include contacting the biomolecule with a branched linking moiety to form a branched linking structure. The branched linking structure is then contacted with a binding moiety on the substrate to form a coupled substrate binding structure, thereby binding the biomolecule to the substrate. The biomolecule may contain a Lewis base or a nucleophile to react with a Lewis acid or electrophile in the branched linking moiety. Alternatively, the biomolecule may contain a Lewis acid or electrophile that can react with a Lewis base or nucleophile in the branched linking moiety. Additionally, the biomolecule can be bound to the substrate through a covalent or non-covalent bond.
    Type: Grant
    Filed: January 18, 2007
    Date of Patent: November 16, 2010
    Assignee: Nanogen Recognomics GmbH
    Inventors: Markus Schweitzer, Norbert Windhab, John R. Havens, Thomas J. Onofrey, Charles Greef, Daguang Wang
  • Patent number: 7700761
    Abstract: Provided are processes for preparing a 3?-deoxypentopyranosyl oligomers with linkers for linking biomolecules. The processes can the steps of: bonding a 4?-protected-3?-deoxypentopyranosyl nucleoside to a solid support by coupling the 2?-OH group with a CPG support or other similar support with an amide linkage; deprotecting the 4?-protected-3?-deoxypentopyranosyl nucleoside at the 4? position; deprotecting the 4?-protected-3?-deoxypentopyranosyl nucleoside at the 4? position; and conjugating a linker to the free 4? position. The resulting product can be conjugated via the linker to a biomolecule. The method can include, prior to addition of the linker, reacting the 4?-OH group of the 4?-protected-3?-deoxypentopyranosyl nucleoside that is linked to the solid support with a 4?-protected-3?-deoxypentopyranosyl nucleoside phosphoramidite in the presence of a coupling reagent, and oxidizing the reaction product. This step can be repeated one or more times to produce an oligomer of desired length.
    Type: Grant
    Filed: May 31, 2006
    Date of Patent: April 20, 2010
    Assignee: Nanogen Recognomics GmbH
    Inventors: Christian Miculka, Thomas Wagner, Norbert Windhab
  • Patent number: 7501506
    Abstract: The invention relates to compounds including at least one pentopyranosyl nucleic acid and a biomolecule conjugated through a covalent linkage to the at least one pentopyranosyl nucleic acid. The pentopyranosyl nucleic acid has at least two pentopyranosyl nucleotide subunits covalently linked between carbon 4 and carbon 2 of their respective pentopyranosyl rings. The pentopyranosyl nucleic acid does not non-covalently bond or hybridize to naturally occurring DNA or RNA. The invention also relates to compounds comprising a biotin molecule and a pentopyranosyl nucleic acid conjugated through a covalent linkage to the biotin molecule. Processes for preparing conjugates are also described.
    Type: Grant
    Filed: August 3, 2006
    Date of Patent: March 10, 2009
    Assignee: Nanogen Recognomics GmbH
    Inventors: Christian Miculka, Norbert Windhab, Tilmann Brandstetter, Gerhard Burdinski
  • Patent number: 7439345
    Abstract: The invention relates to conjugates including at least one linker, a biomolecule coupled to the linker, and cyclohexane derivatives of the following formula: and oligomers thereof.
    Type: Grant
    Filed: December 23, 2003
    Date of Patent: October 21, 2008
    Assignee: Nanogen Recognomics GmbH
    Inventors: Christian Miculka, Norbert Windhab, Albert Eschenmoser, Stefan Scherer, Gerhard Quinkert
  • Patent number: 7186813
    Abstract: Biomolecules are provided having multiple binding sites for attachment to a substrate surface. The multiple attachment sites may be produced directly on the biomolecule or through use of branched phosphoramidite moieties that can be added in multiple to form dendritic structures which can in turn provide attachment sites for substrate binding moieties. Substrate binding moieties may include noncovalent binding moieties. For covalent binding moieties oligonucleotides containing hydrazides are provided. These hydrazides can be introduced via protected building blocks such as phosphoramidites or via building blocks containing precursor forms of such hydrazides.
    Type: Grant
    Filed: August 11, 2000
    Date of Patent: March 6, 2007
    Assignee: Nanogen Recognomics GmbH
    Inventors: Markus Schweitzer, Norbert Windhab, John R. Havens, Thomas J. Onofrey, Charles Greef, Daguang Wang
  • Patent number: 7153955
    Abstract: The invention relates to a pentopyranosylnucleoside of the formula (I) or of the formula (II) their preparation and use for the production of a therapeutic, diagnostic and/or electronic component.
    Type: Grant
    Filed: May 16, 2002
    Date of Patent: December 26, 2006
    Assignee: Nanogen Recognomics GmbH
    Inventors: Christian Miculka, Norbert Windhab, Tilmann Brandstetter, Gerhard Burdinski
  • Patent number: 7129229
    Abstract: This invention relates to attachment chemistries for binding macromolecules to a substrate surface or to other conjugation targets. More particularly, this invention relates to attachment chemistries involving branched or linear structures having one or more hydrazide attachment moieties for binding the macromolecules to a substrate surface, or for other conjugation reactions. Novel modifying reagents are provided for the introduction of protected hydrazide attachment moieties or precursor forms of such hydrazides to the macromolecule, either as a single hydrazide or as multiple hydrazides.
    Type: Grant
    Filed: August 10, 2001
    Date of Patent: October 31, 2006
    Assignee: Nanogen Recognomics GmbH
    Inventors: Stefan Raddatz, Jochen Müller-Ibeler, Markus Schweitzer, Christoph Brücher, Norbert Windhab, John R. Havens, Thomas J. Onofrey, Charles H. Greef, Daguang Wang
  • Patent number: 6893822
    Abstract: The present invention relates to conjugates of synthetic binding units and nucleic acids. The present invention also relates to methods for sorting and immobilizing nucleic acids on support materials using such conjugates by specific molecular addressing of the nucleic acids mediated by the synthetic binding systems. Particularly, the present invention also relates to novel methods of utilizing conjugates of synthetic binding units and nucleic acids to in active electronic array systems to produce novel array constructs from the conjugates, and the use of such constructs in various nucleic acid assay formats. In addition, the present invention relates to various novel forms of such conjugates, improved methods of making solid phase synthesized conjugates, and improved methods of conjugating pre-synthesized synthetic binding units and nucleic acids.
    Type: Grant
    Filed: July 19, 2001
    Date of Patent: May 17, 2005
    Assignee: Nanogen Recognomics GmbH
    Inventors: Markus Schweitzer, Richard R. Anderson, Michael D. Fiechtner, Jochen Müller, Stefan Raddatz, Christoph Brücher, Norbert Windhab, Jill M. Orwick, Eberhard Schneider, Marc Pignot, Stefan Kienle
  • Publication number: 20050004356
    Abstract: The present invention relates to a linker nucleoside, its preparation and use for the covalent bonding of biomolecules to oligonucleotides, in particular p-RNA oligonucleotides.
    Type: Application
    Filed: March 2, 2004
    Publication date: January 6, 2005
    Applicant: Nanogen Recognomics GmbH
    Inventors: Christian Miculka, Norbert Windhab, Tilmann Brandstetter, Stefan Scherer
  • Publication number: 20040254098
    Abstract: The invention relates to a 3′-deoxypentopyranosylnucleic acid consisting essentially of 3′-deoxypentopyranosylnucleosides of the formulae (I) or of the formulae (II) 1
    Type: Application
    Filed: February 24, 2004
    Publication date: December 16, 2004
    Applicant: Nanogen Recognomics GmbH
    Inventors: Christian Miculka, Thomas Wagner, Norbert Windhab
  • Publication number: 20040198966
    Abstract: The invention relates to a pentopyranosylnucleoside of the formula (I) or of the formula (II) 1
    Type: Application
    Filed: August 19, 2003
    Publication date: October 7, 2004
    Applicant: Nanogen Recognomics GmbH
    Inventors: Christian Miculka, Norbert Windhab, Tilmann Brandstetter, Gerhard Burdinski
  • Publication number: 20040142451
    Abstract: The invention relates to conjugates including at least one linker, a biomolecule coupled to the linker, and cyclohexane derivatives of the following formula: 1
    Type: Application
    Filed: December 23, 2003
    Publication date: July 22, 2004
    Applicant: Nanogen Recognomics GmbH
    Inventors: Christian Miculka, Norbert Windhab, Albert Eschenmoser, Stefan Scherer, Gerhard Quinkert
  • Patent number: 6699978
    Abstract: The present invention relates to a linker nucleoside, its preparation and use for the covalent bonding of biomolecules to oligonucleotides, in particular p-RNA oligonucleotides.
    Type: Grant
    Filed: July 11, 2000
    Date of Patent: March 2, 2004
    Assignee: Nanogen Recognomics GmbH
    Inventors: Christian Miculka, Norbert Windhab, Tilmann Brandstetter, Stefan Scherer
  • Patent number: 6696555
    Abstract: The invention relates to a 3′-deoxypentopyranosylnucleic acid consisting essentially of 3′-deoxypentopyranosylnucleosides of the formulae (I) or of the formulae (II) their preparation and use for the production of a therapeutic, diagnostic and/or electronic component.
    Type: Grant
    Filed: April 19, 2001
    Date of Patent: February 24, 2004
    Assignee: Nanogen Recognomics GmbH
    Inventors: Christian Miculka, Thomas Wagner, Norbert Windhab
  • Patent number: 6689884
    Abstract: The invention relates to a compound of formula (I), wherein R1 is NR3R4, OR3 or SR3 with R3 and R4 being H or CnH2n+1 independently of each other and being the same or different, n being a whole number from 1 to 12; R2 is equal to CmH2m—C(X)—Y with X being ═O, ═S or ═N, Y being equal to OR3, NR3R4 or SR3, R3 and R4 having the same meaning given above, and m being a whole number from 1 to 4; or R2 is equal to CmH2m—Z—Y′ with Z being a sulfonyl, phosphonyl, ether or amine group, Y′ being equal to H, CnH2n+1, OR3, NR3R4 or SR3 then Z is sulphonyl or phosphonyl group, n, R3 and R4 having the meaning given above, and Y′ being equal to CnH2n+1 when Z is an ether or an amine group; A, B, and D are the same or different and mean CR5R6, O, NR7 ou S independently of each other with R5, R6 and R7 being H or CnH2n+1, independently of each other, n having the meaning given above; and C is equal to CR8 or N with R8 having the meaning of R5 indepen
    Type: Grant
    Filed: August 3, 2000
    Date of Patent: February 10, 2004
    Assignee: Nanogen Recognomics GmbH
    Inventors: Christian Miculka, Norbert Windhab, Albert Eschenmoser, Stefan Scherer, Gerhard Quinkert
  • Patent number: 6664071
    Abstract: A device for the detection of electromagnetic radiation, wherein the device has (i) a photoactive layer of a semiconductor having a band gap of greater than 2.5 eV, (ii) a dye applied to the semiconductor, and (iii) a charge transport layer comprising a hole conductor material, where the hole conductor material is preferably solid and amorphous.
    Type: Grant
    Filed: September 26, 2000
    Date of Patent: December 16, 2003
    Assignee: Nanogen Recognomics GmbH
    Inventors: Norbert Windhab, Hans-Ulrich Hoppe, Donald Lupo
  • Patent number: 6613894
    Abstract: The invention relates to a process for the preparation of a pyranosyl nucleic acid of the formula (I) or of the formula (II) The process for the preparation of the pyranosyl nucleic acid comprises (a) bonding the nucleoside to a solid support, (b) deprotecting the 3′,4′-protected nucleoside, (c) reacting the reaction product from step (b) with a 3′,4′-protected pyranosyl nuceloside phosphoramidite, repeating steps (b) and (c) one or more times to produce the desired length of nucleic acid, and coupling a biomolecule to the product of step (d). In a further step, the nucleic acid can be released from the solid support. In one embodiment, the biomolecule may be a DNA or RNA, where furanosyl nucleoside phosphoramidites are added to the pyranosyl nucleic acid.
    Type: Grant
    Filed: March 20, 2000
    Date of Patent: September 2, 2003
    Assignee: Nanogen Recognomics GmbH
    Inventors: Christian Miculka, Norbert Windhab, Tilmann Brandstetter, Gerhard Burdinski
  • Patent number: 6608186
    Abstract: The invention relates to a pentopyranosylnucleoside of the formula (I) or of the formula (II) their preparation and use for the production of a therapeutic, diagnostic and/or electronic component.
    Type: Grant
    Filed: July 27, 2000
    Date of Patent: August 19, 2003
    Assignee: Nanogen Recognomics GmbH
    Inventors: Christian Miculka, Norbert Windhab, Tilmann Brandstetter, Gerhard Burdinski
  • Patent number: 6545134
    Abstract: Processes for the preparation of 3′,4′-cyclic acetals of pentopyranosylnucleosides, in which the pentopyranosyl nucleoside is reacted with an aldehyde, ketone, acetal, or ketal under reduced pressure of less than about 500 mbar.
    Type: Grant
    Filed: January 18, 2001
    Date of Patent: April 8, 2003
    Assignee: Nanogen Recognomics, GmbH.
    Inventors: Albert Eschenmoser, Stefan Pitsch, Sebastian Wendeborn
  • Patent number: 6506896
    Abstract: The invention relates to a pentopyranosylnucleoside of the formula (I) or of the formula (II) their preparation and use for the production of a therapeutic, diagnostic and/or electronic component.
    Type: Grant
    Filed: July 11, 2000
    Date of Patent: January 14, 2003
    Assignee: Nanogen Recognomics GmbH
    Inventors: Christian Miculka, Norbert Windhab, Tilmann Brandstetter, Gerhard Burdinski