Patents Assigned to Phylogica Limited
  • Patent number: 10288601
    Abstract: The present invention provides a method of determining or identifying or isolating a cell-penetrating peptide (CPP) or analog or derivative thereof having cell-type selectivity and/or at least capable of passing through a Blood Brain Barrier of an animal subject. This invention also provides CPPs and analogs and derivatives thereof, such as those set forth in SEQ ID NOs: 1-27 of the Sequence Listing, and compositions comprising one or more of the CPPs, including conjugates in which a CPP or analog or derivative thereof is linked to a cargo molecule. The invention also provides methods for transporting cargo molecules across cell membranes to specific locations within cells, and for treating, preventing and/or diagnosing diseases that are treatable by a cargo molecule to which a CPP or analog or derivative of the invention is attached. The invention also provides tailored peptide libraries for use in identifying or isolating CPPs.
    Type: Grant
    Filed: December 11, 2017
    Date of Patent: May 14, 2019
    Assignee: Phylogica Limited
    Inventors: Paul Michael Watt, Richard Hopkins, Katrin Hoffman
  • Patent number: 9880151
    Abstract: The present invention provides a method of determining or identifying or isolating a cell-penetrating peptide (CPP) or analog or derivative thereof having cell-type selectivity and/or at least capable of passing through a Blood Brain Barrier of an animal subject. This invention also provides CPPs and analogs and derivatives thereof, such as those set forth in SEQ ID NOs: 1-27 of the Sequence Listing, and compositions comprising one or more of the CPPs, including conjugates in which a CPP or analog or derivative thereof is linked to a cargo molecule. The invention also provides methods for transporting cargo molecules across cell membranes to specific locations within cells, and for treating, preventing and/or diagnosing diseases that are treatable by a cargo molecule to which a CPP or analog or derivative of the invention is attached. The invention also provides tailored peptide libraries for use in identifying or isolating CPPs.
    Type: Grant
    Filed: May 23, 2012
    Date of Patent: January 30, 2018
    Assignee: Phylogica Limited
    Inventors: Paul Michael Watt, Richard Hopkins, Katrin Hoffman
  • Patent number: 9567373
    Abstract: The present invention provides the means for producing libraries of peptide structures for drug screening applications that are capable of folding or assuming their native conformations independently of artificial scaffolds or flanking sequences in the proteins from which they are derived. The libraries can be highly diverse such that they are representative of the repertoire of protein structures existing in nature. The libraries can also be non-redundant or normalized such that the bias towards specific structures existing in source data sets and/or in nature is/are removed. In a particularly preferred embodiment, the present invention provides 30,000 independent fold structures produced by this method. The present invention also provides computer-readable media and systems comprising structural data in relation to the peptide libraries, and methods for displaying and screening the libraries.
    Type: Grant
    Filed: September 26, 2013
    Date of Patent: February 14, 2017
    Assignee: Phylogica Limited
    Inventors: Paul Michael Watt, Roland Dunbrack
  • Publication number: 20150105274
    Abstract: The present invention relates to improved and integrated methods for the characterisation of an interaction site on a target protein that modulates the phenotype of a mammalian cell, such as a phenotype other than death and/or reduced growth. Such methods of the present invention include those to identify a target protein modulates such a phenotype of a mammalian cell, and optionally to characterise an interaction site on said target protein. Such identification and characterisation methods are useful in the development of research tools and/or therapeutics, such protein/peptide or small molecule therapeutics. Accordingly, the present invention also relates to methods of: identification of a ligand, such as a small molecule ligand, that binds to such a target protein; and identification a compound being a candidate modulator of said phenotype of a mammalian cell.
    Type: Application
    Filed: February 7, 2013
    Publication date: April 16, 2015
    Applicants: Phylogica Limited, Cambridge Enterprise Limited
    Inventors: Paul Watt, Bryn Hardwick, Grahame McKenzie, Ashok Venkitaraman
  • Patent number: 8946381
    Abstract: The present invention provides a topical composition comprising (i) an amount of an AP-1 signaling inhibitor sufficient to reduce, delay or prevent apoptosis and/or necrosis induced by dermal wounding and/or to induce and/or enhance proliferation of a cell; and (ii) a suitable carrier or excipient e.g., a topical carrier or excipient or other carrier or excipient for dermal application. For example, the AP-1 signaling inhibitor is a peptide analog comprising the sequence set forth in SEQ ID NO: 104. The present invention also provides a method of treating a dermal wound comprising topically administering said topical composition to a subject suffering from a dermal wound.
    Type: Grant
    Filed: February 6, 2007
    Date of Patent: February 3, 2015
    Assignees: Phylogica Limited, The McComb Foundation, Inc.
    Inventors: Mark Fear, Paul Watt, Richard Hopkins, Nadia Milech
  • Patent number: 8822409
    Abstract: Polypeptides are identified through an assay based on inhibiting AP-I signalling activity and others to treat acute respiratory distress syndrome (ARDS) and clinical disorders associated with the development of ARDS.
    Type: Grant
    Filed: June 20, 2008
    Date of Patent: September 2, 2014
    Assignee: Phylogica Limited
    Inventors: Nadia Marian Dorothy Milech, Paul Michael Watt, Patrick G. Holt, Deborah Strickland
  • Patent number: 8802634
    Abstract: The present invention provides compositions comprising peptidyl inhibitors of CD40L-dependent signalling that are not derived from a natural binding partner of CD40L such as CD40, or from a native CD40-CD40L interface. More particularly, the peptidyl inhibitors of the present invention are derived from natural sources that do not express CD40-CD40L costimulatory pathways. The invention also provides synthetic derivatives and analogs of the peptidyl inhibitors having enhanced binding affinity for CD40L or enhanced inhibitory activity relative to their parent molecules.
    Type: Grant
    Filed: July 13, 2009
    Date of Patent: August 12, 2014
    Assignee: Phylogica Limited
    Inventors: Paul Michael Watt, Richard Hopkins, Katrin Hoffman
  • Publication number: 20140141452
    Abstract: The present invention provides a method of determining or identifying or isolating a cell-penetrating peptide (CPP) or analog or derivative thereof having cell-type selectivity and/or at least capable of passing through a Blood Brain Barrier of an animal subject. This invention also provides CPPs and analogs and derivatives thereof, such as those set forth in SEQ ID NOs: 1-27 of the Sequence Listing, and compositions comprising one or more of the CPPs, including conjugates in which a CPP or analog or derivative thereof is linked to a cargo molecule. The invention also provides methods for transporting cargo molecules across cell membranes to specific locations within cells, and for treating, preventing and/or diagnosing diseases that are treatable by a cargo molecule to which a CPP or analog or derivative of the invention is attached. The invention also provides tailored peptide libraries for use in identifying or isolating CPPs.
    Type: Application
    Filed: May 23, 2012
    Publication date: May 22, 2014
    Applicant: Phylogica Limited
    Inventors: Paul Michael Watt, Richard Hopkins, Katrin Hoffman
  • Publication number: 20140128268
    Abstract: The present invention provides the means for producing libraries of peptide structures for drug screening applications that are capable of folding or assuming their native conformations independently of artificial scaffolds or flanking sequences in the proteins from which they are derived. The libraries can be highly diverse such that they are representative of the repertoire of protein structures existing in nature. The libraries can also be non-redundant or normalized such that the bias towards specific structures existing in source data sets and/or in nature is/are removed. In a particularly preferred embodiment, the present invention provides 30,000 independent fold structures produced by this method. The present invention also provides computer-readable media and systems comprising structural data in relation to the peptide libraries, and methods for displaying and screening the libraries.
    Type: Application
    Filed: September 26, 2013
    Publication date: May 8, 2014
    Applicant: Phylogica Limited
    Inventors: Paul Michael Watt, Roland Dunbrack
  • Patent number: 8575070
    Abstract: The present invention provides the means for producing libraries of peptide structures for drug screening applications that are capable of folding or assuming their native conformations independently of artificial scaffolds or flanking sequences in the proteins from which they are derived. The libraries can be highly diverse such that they are representative of the repertoire of protein structures existing in nature. The libraries can also be non-redundant or normalized such that the bias towards specific structures existing in source data sets and/or in nature is/are removed. In a particularly preferred embodiment, the present invention provides 30,000 independent fold structures produced by this method. The present invention also provides computer-readable media and systems comprising structural data in relation to the peptide libraries, and methods for displaying and screening the libraries.
    Type: Grant
    Filed: February 7, 2007
    Date of Patent: November 5, 2013
    Assignee: Phylogica Limited
    Inventors: Paul Michael Watt, Roland Dunbrack
  • Publication number: 20130266605
    Abstract: The present invention provides compositions comprising peptidyl inhibitors of CD40L-dependent signaling that are not derived from a natural binding partner of CD40L such as CD40, or from a native CD40-CD40L interface. More particularly, the peptidyl inhibitors of the present invention are derived from natural sources that do not express CD40-Cd40L costimulatory pathways. The invention also provides synthetic derivatives and analogs of the peptidyl inhibitors having enhanced binding affinity for CD40L or enhanced inhibitory activity relative to their parent molecules.
    Type: Application
    Filed: September 16, 2011
    Publication date: October 10, 2013
    Applicant: PHYLOGICA LIMITED
    Inventors: Paul Michael Watt, Richard Hopkins, Katrin Hoffmann
  • Publication number: 20120178649
    Abstract: The present invention provides novel methods for producing nucleic acid fragment libraries that express highly diverse peptides or protein domains and, in particular, methods for producing nucleic acid fragment libraries wherein the nucleic acid fragments of the libraries are derived from two or more diverse characterized genomes.
    Type: Application
    Filed: July 15, 2011
    Publication date: July 12, 2012
    Applicant: Phylogica Limited
    Inventors: Paul M. Watt, Wayne Thomas, Richard Hopkins
  • Patent number: 8063012
    Abstract: The present invention provides AP-1 signaling inhibitory peptides of SEQ ID NOS:54-57, compositions of the peptides, and methods of treatment of neurological disorders by administration of the peptide(s) or compositions.
    Type: Grant
    Filed: January 31, 2007
    Date of Patent: November 22, 2011
    Assignee: Phylogica Limited
    Inventors: Paul Watt, Nadia Milech, Mark Fear
  • Publication number: 20110218118
    Abstract: The present invention provides a non-hybrid screening method for the identification and/or isolation of a peptide that is capable of modulating a phenotype in a cell, tissue or organism. For example, the non-hybrid screening method identifies a peptide that is derived from an organism that is unrelated to the cell, tissue or organism. Alternatively, or in addition, the non-hybrid screening method identifies a peptide that is capable of rescuing the cell, tissue or organism from cell death or inducing a cell, tissue or organism to grow. The present invention also provides a non-hybrid screening method for identifying a peptide that is useful for treating a disease and/or disorder.
    Type: Application
    Filed: June 3, 2005
    Publication date: September 8, 2011
    Applicant: PHYLOGICA LIMITED
    Inventors: Paul M. Watt, Richard Hopkins, Mark Fear, Nadia M. D. Milech
  • Patent number: 7803765
    Abstract: The present invention provides novel methods for producing nucleic acid fragment libraries that express highly diverse peptides or protein domains and, in particular, methods for producing nucleic acid fragment libraries wherein the nucleic acid.
    Type: Grant
    Filed: February 20, 2004
    Date of Patent: September 28, 2010
    Assignee: Phylogica Limited
    Inventors: Paul Michael Watt, Wayne Robert Thomas, Richard Hopkins
  • Publication number: 20100029552
    Abstract: The present invention provides a method for the screening of nucleic acid fragment expression libraries and selecting encoded peptides based upon their ability to modulate the activity of a target protein or nucleic acid and assume conserved conformations compatible with albeit not reiterative of the target protein or nucleic acid. The present invention also provides methods for the diagnosis and treatment of ischemia. The present invention also provides c-Jun dimerization inhibitory peptides and analogues thereof that are useful for treatment of ischemia.
    Type: Application
    Filed: August 22, 2005
    Publication date: February 4, 2010
    Applicant: Phylogica Limited
    Inventors: Paul Michael Watt, Mark Fear
  • Publication number: 20090170722
    Abstract: The present invention provides novel methods for producing nucleic acid fragment libraries that express highly diverse peptides or protein domains and, in particular, methods for producing nucleic acid fragment libraries wherein the nucleic acid fragments of the libraries are derived from two or more diverse characterized genomes.
    Type: Application
    Filed: June 1, 2007
    Publication date: July 2, 2009
    Applicant: Phylogica Limited
    Inventors: Paul M. Watt, Wayne Thomas, Richard Hopkins
  • Patent number: 7270969
    Abstract: The present invention provides novel methods for producing nucleic acid fragment libraries that express highly diverse peptides or protein domains and, in particular, methods for producing nucleic acid fragment libraries wherein the nucleic acid fragments of the libraries are derived from two or more diverse characterized genomes.
    Type: Grant
    Filed: February 21, 2003
    Date of Patent: September 18, 2007
    Assignee: Phylogica Limited
    Inventors: Paul Michael Watt, Wayne Robert Thomas, Richard Hopkins
  • Publication number: 20070031832
    Abstract: Methods for producing nucleic acid fragment libraries that express highly diverse peptide domains, wherein the nucleic acid fragments are derived form microorganisms or eukaryotes with compact genomes. Also peptides derived form the libraries wherein the peptides are selected on the basis of their abilities to bind selected target proteins, including c-jun and antibodies raised against dust mite allergens.
    Type: Application
    Filed: February 20, 2004
    Publication date: February 8, 2007
    Applicant: Phylogica Limited
    Inventors: Paul Watt, Wayne Thomas, Richard Hopkins
  • Patent number: 6994982
    Abstract: The present invention provides a method for identifying a modulator or mediator of a biological activity, which activity includes antigenicity and or immunogenicity, said method comprising the step of: (i) producing a gene fragment expression library derived from defined nucleotide sequence fragments; and (ii) assaying the expression library for at least an amino acid sequence derived from step (i) for a biological activity wherein that activity is different from any activity the amino acid sequence may have in its native environment.
    Type: Grant
    Filed: May 5, 2000
    Date of Patent: February 7, 2006
    Assignee: Phylogica Limited
    Inventors: Paul Michael Watt, Wayne Robert Thomas