Abstract: Modified Tryptamine, Tryptamine-2?-deoxy-uridine (TrpdU) and TrpdU-phosphoramidites for oligonucleotide syn-thesis are provided, as well as improved methods of their synthesis and oligonucleotides comprising at least one modified TrpdU nucleotide.
Abstract: Described herein are aptamers capable of binding to growth differentiation factor 11 (GDF11) protein; compositions comprising a GDF11 binding aptamer with a GDF11 protein; and methods of making and using the same.
Type:
Application
Filed:
November 23, 2015
Publication date:
January 24, 2019
Applicant:
SOMALOGIC, INC.
Inventors:
Urs OCHSNER, Louis GREEN, Dom ZICHI, Nebojsa JANJIC
Abstract: The present application relates generally to biomarkers for tuberculosis (TB) infection and disease and methods of detection thereof. In various embodiments, the invention relates to one or more biomarkers, biomarker panels, methods, devices, reagents, systems, and kits for detecting and/or characterizing TB infection and/or disease.
Type:
Application
Filed:
May 7, 2016
Publication date:
December 13, 2018
Applicants:
SOMALOGIC, INC., UNIVERSITY OF CAPE TOWN, SEATTLE BIOMEDICAL RESEARCH INSTITUTE D/B/A THE CENTER FOR INFECTIOUS DISEASE RESEARCH
Inventors:
Thomas HRAHA, David STERLING, Urs A. OCHSNER, Nebojsa JANJIC, Thomas Jens SCRIBA, Adam Garth PENN-NICHOLSON, Willem Albert HANEKOM, Daniel Edward ZAK, Ethan Greene THOMPSON
Abstract: Described herein are compositions and methods for detecting the presence or absence of a microorganism in a sample comprising contacting the sample with an aptamer capable of binding to a cell-surface protein of the microorganism to form a complex, contacting the mixture with a second aptamer capable of binding to the first cell-surface protein or a second cell-surface protein of the microorganism; and performing an assay to detect the second aptamer, wherein detecting the second aptamer indicates that the microorganism is present in the sample, and wherein not detecting the second aptamer indicates that the microorganism is absent from the sample.
Abstract: The present disclosure relates to customized therapy for disease. The present disclosure also relates to aptamer-based compositions and methods for identifying, modulating and monitoring drug targets in muscular disease (e.g., Duchenne muscular dystrophy).
Type:
Application
Filed:
January 24, 2018
Publication date:
October 4, 2018
Applicant:
SomaLogic, Inc.
Inventors:
Larry Gold, Robert Kirk DeLisle, David Sterling, Edward Brody, Britta Singer, Robert Mehler
Abstract: The present invention relates to developing customized therapies for a disease or condition in a subject. In particular, the present invention relates to aptamer-based compositions and methods for identifying, modulating and monitoring drug targets in individual with a disease or condition, and further composition and methods for identifying and selecting protein targets for drug development.
Type:
Application
Filed:
September 9, 2016
Publication date:
September 13, 2018
Applicant:
SOMALOGIC, INC.
Inventors:
Larry GOLD, Robert Kirk DELISLE, David STERLING, Rachel OSTROFF, Dom ZICHI
Abstract: Methods, compositions, and kits for determining whether a subject has non-alcoholic fatty liver disease (NAFLD) are provided. Methods, compositions, and kits for determining whether a subject has non-alcoholic steatosis are also provided. Methods, compositions, and kits for determining whether a subject has non-alcoholic steatohepatitis (NASH) are also provided.
Type:
Application
Filed:
March 2, 2018
Publication date:
September 13, 2018
Applicant:
SOMALOGIC, INC.
Inventors:
Malti NIKRAD, Stuart G. FIELD, Stephen Alaric WILLIAMS
Abstract: Methods and computer methods used to assess an individual for the prediction of risk of developing a Cardiovascular (CV) Event over a 1 to 5 year period are provided. The methods employ at least two biomarkers selected from MMP12, angiopoietin-2, complement C7, cardiac troponin I, angiopoietin-related protein 4, CCL18/PARC, alpha-1-antichymotrypsin complex, GDF11 and alpha-2-antiplasmin, or GDF11 in combination with FSTL3. The methods are particularly useful in predicting CV events in patients who suffer from coronary heart disease (CHD).
Type:
Application
Filed:
November 3, 2014
Publication date:
July 5, 2018
Applicant:
SOMALOGIC, INC.
Inventors:
David STERLING, Shintaro KATO, Edward N. BRODY, Stephen A. WILLIAMS
Abstract: Aptamers having improved stability against nucleases that bind PDGF and aptamers that bind VEGF are provided. In addition, aptamer constructs comprising a PDGF aptamer and a VEGF aptamer are provided. Pharmaceutical compositions comprising the aptamers and aptamer constructs are provided, as well as methods of treating conditions using the aptamers and aptamer constructs.
Type:
Grant
Filed:
May 15, 2017
Date of Patent:
June 12, 2018
Assignee:
SOMALOGIC, INC.
Inventors:
Nebojsa Janjic, Daniel W. Drolet, Amy D. Gelinas, Chi Zhang, Michael Vrkljan
Abstract: The present disclosure describes improved SELEX methods for producing aptamers that are capable of binding to target molecules and improved photoSELEX methods for producing photoreactive aptamers that are capable of both binding and covalently crosslinking to target molecules. Specifically, the present disclosure describes methods for producing aptamers and photoaptamers having slower dissociation rate constants than are obtained using prior SELEX and photoSELEX methods. The disclosure further describes aptamers and photoaptamers having slower dissociation rate constants than those obtained using prior methods. In addition, the disclosure describes aptamer constructs that include a variety of functionalities, including a cleavable element, a detection element, and a capture or immobilization element.
Type:
Application
Filed:
January 23, 2018
Publication date:
June 7, 2018
Applicant:
SomaLogic, Inc.
Inventors:
Dominic Zichi, Sheri K. Wilcox, Chris Bock, Daniel J. Schneider, Bruce Eaton, Larry Gold
Abstract: Methods, compositions, and kits for determining whether a subject has non-alcoholic fatty liver disease (NAFLD) are provided. Methods, compositions, and kits for determining whether a subject has non-alcoholic steatosis are also provided. Methods, compositions, and kits for determining whether a subject has non-alcoholic steatohepatitis (NASH) are also provided.
Type:
Grant
Filed:
February 16, 2017
Date of Patent:
April 17, 2018
Assignee:
SomaLogic, Inc.
Inventors:
Malti Nikrad, Stuart G. Field, Stephen Alaric Williams
Abstract: Described herein are 5-position modified cytosine nucleotides and nucleosides as well as phosphoramidites and triphosphates derivatives thereof. Further provided are methods of making and using the same, and compositions and uses of the modified nucleosides as part of a nucleic acid molecule (e.g., aptamer).
Type:
Grant
Filed:
November 19, 2014
Date of Patent:
April 10, 2018
Assignee:
SOMALOGIC, INC.
Inventors:
John Rohloff, Nebojsa Janjic, Bharat Nathu Gawande
Abstract: Described herein are compositions comprising a first aptamer, second aptamer and a target that are capable of forming a ternary complex, and wherein the first aptamer and the second aptamer comprise C-5 pyrimidine modification schemes that are different, and methods of making and using such compositions.
Type:
Grant
Filed:
September 24, 2014
Date of Patent:
March 27, 2018
Assignee:
SOMALOGIC, INC.
Inventors:
Urs A. Ochsner, Louis S. Green, Larry Gold, Nebojsa Janjic
Abstract: Described herein are aptamers capable of binding to growth differentiation factor 8 (GDF8) protein; compositions comprising a GDF8 binding aptamer; and methods of making and using the same.
Type:
Application
Filed:
February 5, 2016
Publication date:
January 18, 2018
Applicant:
SOMALOGIC, INC.
Inventors:
Urs OCHSNER, Louis GREEN, Nebojsa JANJIC
Abstract: The present invention provides aptamers that specifically bind to the EGF receptor in a sample, and diagnostic and analytical methods using those aptamers. In some embodiments, the aptamers include a 3? cap. In some embodiments, the 3? cap is an inverted deoxythymidine. In some embodiments the aptamers include a spacer and at least one moiety selected from the group consisting of binding pair member and a detectable label, wherein the spacer is attached to the 5?-end of the aptamer and the moiety is attached the 5? end of the spacer. In some embodiments the spacer is hexaethylene glycol. In some embodiments, the binding pair member biotin. In some embodiments the detectable label is a fluorophore.
Type:
Application
Filed:
May 5, 2017
Publication date:
November 16, 2017
Applicants:
Quest Diagnostics Investments Incorporated, SOMALOGIC, INC.
Inventors:
Chris Bock, Deborah Ayers, Malti P. Nikrad, Bharat Nathu Gawande, Jennifer C. Bertino, Weimin Sun, Charles M. Strom, Noh Jin Park
Abstract: Methods, compositions, and kits for determining whether a subject has non-alcoholic fatty liver disease (NAFLD) are provided. Methods, compositions, and kits for determining whether a subject has non-alcoholic steatosis are also provided. Methods, compositions, and kits for determining whether a subject has non-alcoholic steatohepatitis (NASH) are also provided.
Type:
Application
Filed:
February 16, 2017
Publication date:
August 10, 2017
Applicant:
SOMALOGIC, INC.
Inventors:
Malti NIKRAD, Stuart G. FIELD, Stephen Alaric WILLIAMS
Abstract: Aptamers that bind PDGF and aptamers that bind VEGF are provided. In addition, aptamer constructs comprising a PDGF aptamer and a VEGF aptamer are provided. Pharmaceutical compositions comprising the aptamers and aptamer constructs are provided, as well as methods of treating conditions using the aptamers and aptamer constructs.
Type:
Grant
Filed:
June 22, 2016
Date of Patent:
July 11, 2017
Assignee:
SomaLogic, Inc.
Inventors:
Thale C. Jarvis, John C. Rohloff, Amy D. Gelinas, Chi Zhang, Daniel W. Drolet, Sheela M. Waugh, Nebojsa Janjic
Abstract: Aptamers having improved stability against nucleases that bind PDGF and aptamers that bind VEGF are provided. In addition, aptamer constructs comprising a PDGF aptamer and a VEGF aptamer are provided. Pharmaceutical compositions comprising the aptamers and aptamer constructs are provided, as well as methods of treating conditions using the aptamers and aptamer constructs.
Type:
Grant
Filed:
September 8, 2014
Date of Patent:
July 4, 2017
Assignee:
SomaLogic, Inc.
Inventors:
Nebojsa Janjic, Daniel W. Drolet, Amy D. Gelinas, Chi Zhang, Michael Vrkljan
Abstract: Described herein are aptamers capable of binding to human complement component 3 (C3) protein; compositions comprising a C3 binding aptamer with a C3-Protein; and methods of making and using the same.
Type:
Application
Filed:
May 29, 2015
Publication date:
June 15, 2017
Applicant:
SOMALOGIC, INC.
Inventors:
Daniel W. DROLET, Chi ZHANG, Daniel J. O'CONNELL, Shashi GUPTA
Abstract: The present invention provides aptamers that specifically bind to the EGF receptor in a sample, and diagnostic and analytical methods using those aptamers. In some embodiments, the aptamers include a 3? cap. In some embodiments, the 3? cap is an inverted deoxythymidine. In some embodiments the aptamers include a spacer and at least one moiety selected from the group consisting of binding pair member and a detectable label, wherein the spacer is attached to the 5?-end of the aptamer and the moiety is attached the 5? end of the spacer. In some embodiments the spacer is hexaethylene glycol. In some embodiments, the binding pair member biotin. In some embodiments the detectable label is a fluorophore.
Type:
Grant
Filed:
December 28, 2012
Date of Patent:
May 16, 2017
Assignees:
QUEST DIAGNOSTICS INVESTMENTS INCORPORATED, SOMALOGIC, INC.
Inventors:
Chris Bock, Deborah Ayers, Malti P. Nikrad, Bharat Nathu Gawande, Jennifer C. Bertino, Weimin Sun, Charles M. Strom, Noh Jin Park