Patents by Inventor Benjamin HARKE

Benjamin HARKE has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20240085680
    Abstract: The present specification relates to a method for light microscopic examination of a sample (6), in particular by means of laser scanning or MINFLUX microscopy, in which a drift of the sample (6) or of an object in a sample (6) with respect to the light microscope (26) is detected and, if necessary, corrected. In particular, the present specification relates to a corresponding method for examining the sample (6) using laser scanning or MINFLUX microscopy. For this purpose, reference markers (8, 13) are located in the sample, the position of which is repeatedly determined according to the MINFLUX principle in order to determine the drift.
    Type: Application
    Filed: March 25, 2022
    Publication date: March 14, 2024
    Inventors: Roman SCHMIDT, Benjamin HARKE, Matthias REUSS, Lars KASTRUP
  • Publication number: 20240035950
    Abstract: The invention is directed to a method for recording a motion trajectory of an individual particle in a sample and to a light microscope performing this method. Starting from an at least approximately known initial position, the particle is scanned with an intensity distribution of a scanning light comprising a local intensity minimum. When illuminated with the scanning light, the particle to be tracked generates a detectable light signal, from the intensity of which updated coordinates of the particle are calculated. According to the invention, the scanning is terminated when a second measured variable detected in parallel satisfies a termination criterion.
    Type: Application
    Filed: December 21, 2021
    Publication date: February 1, 2024
    Inventors: Benjamin HARKE, Lars KASTRUP, Christian WURM
  • Publication number: 20230384223
    Abstract: The present invention is a method for spatially highly accurate location determination of individual dye molecules of a fluorescent dye by scanning with an intensity distribution of a scanning light having a local minimum. The invention is characterized by the fact that the scanning is not performed uniformly for all dye molecules, but is individually adapted to the dye molecule to be scanned and, if necessary, to its environment in the sample, in order to achieve the most accurate location determination possible with the smallest possible number of fluorescence photons.
    Type: Application
    Filed: October 15, 2021
    Publication date: November 30, 2023
    Inventors: Benjamin HARKE, Christian WURM, Lars KASTRUP, Roman SCHMIDT
  • Publication number: 20230384224
    Abstract: Methods and a device for imaging a sample stained with multiple dyes are disclosed. The methods enable nanoscopic imaging with up to molecular resolution to be placed in the spatial context of microscopic images, or nanoscopic tracking of individual molecules to be performed in the spatial context of a microscopic image. The methods combine different light-optical microscopy techniques in a particularly efficient manner. Molecular resolution can be achieved by a localization microscopic method, in particular by localization according to a MINFLUX or STED-MINFLUX method. These methods are characterized by the fact that, on the one hand, they are particularly gentle on the sample during the steps that precede imaging with molecular resolution, and on the other hand, they make optimal use of the fluorescence photons during localization or enable optimal use.
    Type: Application
    Filed: October 15, 2021
    Publication date: November 30, 2023
    Inventors: Gerald DONNERT, Benjamin HARKE, Winfried WILLEMER
  • Publication number: 20230375473
    Abstract: The invention relates to a method for determining a reference time point (to) by means of a light microscope (1), wherein a sample (2) is illuminated by first light pulses (P1) in order to excite light-emitting entities in the sample (2), wherein a light signal generated by means of the first light pulses (P1) is detected, and wherein the reference time point (to) is determined based on the detected light signal, and wherein the light signal is detected in at least two measurements each in a first detection time window (G1), wherein a starting time point of the first detection time window (G1) is adjusted for each of the measurements. The invention further relates to a light microscope (1) and a computer program for carrying out the method.
    Type: Application
    Filed: May 16, 2023
    Publication date: November 23, 2023
    Inventors: Benjamin HARKE, Lars KASTRUP
  • Publication number: 20230296520
    Abstract: The present disclosure relates to localisation microscopic investigations of samples stained with multiple dyes. According to the present disclosure, it is either provided that a singulated excitable fluorophore of a first species is excited with excitation light of two different wavelengths and that a localisation of the fluorophore is obtained for each of the two wavelengths, or that first test excitation is performed in order to then select a wavelength for excitation light with which a singulated fluorophore is localised. In the first case, the difference in the localisations of the one or preferably multiple individual fluorophores obtained in this way is determined and used to obtain localisations of fluorophores of a different species and those of the first species in a common spatial reference system. The second case is advantageously applicable for tracking structures. Also in the second case, the advantages of the first case can be additionally realised.
    Type: Application
    Filed: May 23, 2023
    Publication date: September 21, 2023
    Inventors: Benjamin HARKE, Roman SCHMIDT, Winfried WILLEMER
  • Publication number: 20230003651
    Abstract: The present disclosure is directed to a method of disturbance correction and to a laser scanning microscope carrying out this method. Specifically, it is directed to an image recording method according to the MINFLUX principle, in which a spatially isolated fluorescence dye molecule is illuminated at a sequence of scan positions by an intensity distribution with a local intensity minimum, and the number of fluorescence photons emitted by the fluorescence dye molecule is detected at each of the scan positions. The location of the molecule is determined with a high spatial resolution from the scan positions and the numbers of fluorescence photons. A disturbance is captured when illuminating the fluorescence dye molecule and detecting the fluorescence light, said disturbance being considered in corrective fashion when determining the location of the fluorescence dye molecule.
    Type: Application
    Filed: December 14, 2020
    Publication date: January 5, 2023
    Inventors: Benjamin HARKE, Roman SCHMIDT, Lars KASTRUP
  • Publication number: 20220057615
    Abstract: The invention relates to a method for punctiform illumination of a sample (1) in a microscope, more particularly a MINFLUX microscope, using illumination light, with the sample (1) being sequentially illuminated at the illumination points (3) of a predefined or predefinable illumination point pattern (2). The method is distinguished in that a lateral extent of the illumination point pattern (2) is smaller than the longest wavelength of the illumination light and in that the illumination points (3) are always illuminated exclusively with a time offset and in that a distinct individual light source (4) of a plurality thereof is assigned to each illumination point (3) of the 10 illumination point pattern (2) and each illumination point (3) is illuminated by the focus of an illumination light bundle (5) of the individual light source (4) assigned thereto.
    Type: Application
    Filed: August 31, 2021
    Publication date: February 24, 2022
    Inventors: Benjamin HARKE, Lars KASTRUP
  • Patent number: 11131630
    Abstract: For setting a laser-scanning fluorescence microscope to a correct alignment in which an intensity maximum of excitation light and an intensity minimum of fluorescence inhibition light coincide in a focal area of an objective lens, a structure in a sample marked with a fluorescent dye is scanned with the intensity maximum of the excitation light to generate first and second pictures of the sample, the first picture corresponding to a higher and the second picture corresponding to a lower intensity of the fluorescence inhibition light. A spatial offset of a first image of the structure in the first picture with regard to a second image of the structure in the second picture is calculated; and the intensity maximum of the excitation light is shifted with regard to the intensity minimum of the fluorescence inhibition light in the direction of the offset calculated to set the microscope to the correct alignment.
    Type: Grant
    Filed: February 26, 2019
    Date of Patent: September 28, 2021
    Assignee: ABBERIOR INSTRUMENTS GMBH
    Inventors: Joern Heine, Matthias Reuss, Benjamin Harke, Lars Kastrup
  • Patent number: 10488342
    Abstract: In methods of high-resolution imaging a structure of a sample, the structure being marked with fluorescence markers, the sample is subjected to a light intensity distribution including an intensity maximum of focused fluorescence excitation light to selectively scan partial areas of interest of the sample. Fluorescence light emitted out of the sample is registered and allocated to a respective location of the light intensity distribution in the sample. The subjection of the sample to at least one part of the light intensity distribution is terminated at each location of the light intensity distribution, if at least one criterion of the following criteria is met: (a) a predetermined maximum light amount of the fluorescence light emitted out of the sample has been registered, and (b) a predetermined minimum light amount of the fluorescence light emitted out of the sample has not been registered within a predetermined period of time.
    Type: Grant
    Filed: October 23, 2018
    Date of Patent: November 26, 2019
    Assignee: ABBERIOR INSTRUMENTS GMBH
    Inventors: Andreas Schoenle, Christian Wurm, Benjamin Harke, Gerald Donnert
  • Patent number: 10429305
    Abstract: In methods of high-resolution imaging a structure of a sample, the structure being marked with fluorescence markers, the sample is subjected to a light intensity distribution including an intensity maximum of focused fluorescence excitation light to selectively scan partial areas of interest of the sample. Fluorescence light emitted out of the sample is registered and allocated to a respective location of the light intensity distribution in the sample. The subjection of the sample to at least one part of the light intensity distribution is terminated at each location of the light intensity distribution, if at least one criterion of the following criteria is met: (a) a predetermined maximum light amount of the fluorescence light emitted out of the sample has been registered, and (b) a predetermined minimum light amount of the fluorescence light emitted out of the sample has not been registered within a predetermined period of time.
    Type: Grant
    Filed: April 23, 2018
    Date of Patent: October 1, 2019
    Assignee: ABBERIOR INSTRUMENTS GMBH
    Inventors: Andreas Schoenle, Christian Wurm, Benjamin Harke, Gerald Donnert
  • Patent number: 10386621
    Abstract: A high resolution laser scanning microscope has beam shaping elements configured to shape a beam of fluorescence inhibiting light which is directed into a back aperture of an objective connected to form an intensity minimum delimited by intensity maxima of the fluorescence inhibiting light in a focus of the objective. A plurality of optical elements including the objective and the beam shaping elements are arranged in a beam path of the beam to the focus. Using the microscope includes removing or exchanging or altering or adding at least one of the optical elements arranged in the beam path of the beam of fluorescence inhibiting light, and compensating a variation of polarization varying properties of the plurality of the optical elements, that is caused by removing or exchanging or altering or adding the at least one optical element, by adapting the beam shaping elements to the variation.
    Type: Grant
    Filed: January 24, 2017
    Date of Patent: August 20, 2019
    Assignee: ABBERIOR INSTRUMENTS GMBH
    Inventors: Benjamin Harke, Matthias Reuss, Lars Kastrup
  • Publication number: 20190195800
    Abstract: For setting a laser-scanning fluorescence microscope to a correct alignment in which an intensity maximum of excitation light and an intensity minimum of fluorescence inhibition light coincide in a focal area of an objective lens, a structure in a sample marked with a fluorescent dye is scanned with the intensity maximum of the excitation light to generate first and second pictures of the sample, the first picture corresponding to a higher and the second picture corresponding to a lower intensity of the fluorescence inhibition light. A spatial offset of a first image of the structure in the first picture with regard to a second image of the structure in the second picture is calculated; and the intensity maximum of the excitation light is shifted with regard to the intensity minimum of the fluorescence inhibition light in the direction of the offset calculated to set the microscope to the correct alignment.
    Type: Application
    Filed: February 26, 2019
    Publication date: June 27, 2019
    Inventors: Joern Heine, Matthias Reuss, Benjamin Harke, Lars Kastrup
  • Publication number: 20190056327
    Abstract: In methods of high-resolution imaging a structure of a sample, the structure being marked with fluorescence markers, the sample is subjected to a light intensity distribution including an intensity maximum of focused fluorescence excitation light to selectively scan partial areas of interest of the sample. Fluorescence light emitted out of the sample is registered and allocated to a respective location of the light intensity distribution in the sample. The subjection of the sample to at least one part of the light intensity distribution is terminated at each location of the light intensity distribution, if at least one criterion of the following criteria is met: (a) a predetermined maximum light amount of the fluorescence light emitted out of the sample has been registered, and (b) a predetermined minimum light amount of the fluorescence light emitted out of the sample has not been registered within a predetermined period of time.
    Type: Application
    Filed: October 23, 2018
    Publication date: February 21, 2019
    Inventors: Andreas Schoenle, Christian Wurm, Benjamin Harke, Gerald Donnert
  • Publication number: 20180238804
    Abstract: In methods of high-resolution imaging a structure of a sample, the structure being marked with fluorescence markers, the sample is subjected to a light intensity distribution including an intensity maximum of focused fluorescence excitation light to selectively scan partial areas of interest of the sample. Fluorescence light emitted out of the sample is registered and allocated to a respective location of the light intensity distribution in the sample. The subjection of the sample to at least one part of the light intensity distribution is terminated at each location of the light intensity distribution, if at least one criterion of the following criteria is met: (a) a predetermined maximum light amount of the fluorescence light emitted out of the sample has been registered, and (b) a predetermined minimum light amount of the fluorescence light emitted out of the sample has not been registered within a predetermined period of time.
    Type: Application
    Filed: April 23, 2018
    Publication date: August 23, 2018
    Inventors: Andreas Schoenle, Christian Wurm, Benjamin Harke, Gerald Donnert
  • Patent number: 9772285
    Abstract: Method of optical microscopy by scanning a sample containing an excitable species, the method comprising: directing a first and a second light beam onto respective, partially overlapped areas of the sample, wherein the first light beam is provided for exciting members of the excitable species, and the second light beam is provided for reducing the number of excited members; detecting an optical signal coming from the sample, comprising a main component and a spurious component, during consecutive first and second time gates, the first time gate being provided for detecting the optical signal for a time interval during which the main component and the spurious component are both present, and the second time gate being provided for detecting the optical signal for a time interval during which the main component tends to or is zero; processing the detected optical signal to separate its main component.
    Type: Grant
    Filed: August 12, 2014
    Date of Patent: September 26, 2017
    Assignee: FONDAZIONE ISTITUTO ITALIANO DI TECNOLOGIA
    Inventors: Giuseppe Vicidomini, Benjamin Harke, Alberto Diaspro
  • Publication number: 20170212340
    Abstract: A high resolution laser scanning microscope has beam shaping elements configured to shape a beam of fluorescence inhibiting light which is directed into a back aperture of an objective connected to form an intensity minimum delimited by intensity maxima of the fluorescence inhibiting light in a focus of the objective. A plurality of optical elements including the objective and the beam shaping elements are arranged in a beam path of the beam to the focus. Using the microscope includes removing or exchanging or altering or adding at least one of the optical elements arranged in the beam path of the beam of fluorescence inhibiting light, and compensating a variation of polarization varying properties of the plurality of the optical elements, that is caused by removing or exchanging or altering or adding the at least one optical element, by adapting the beam shaping elements to the variation.
    Type: Application
    Filed: January 24, 2017
    Publication date: July 27, 2017
    Inventors: Benjamin Harke, Matthias Reuss, Lars Kastrup
  • Publication number: 20170123197
    Abstract: A device comprises two polarization-selective optical elements for separately modulating wave fronts of two components of a collimated light beam, which are transversally polarized in orthogonal directions. The two polarization-selective optical elements are first and second partial areas of one spatial light modulator (SLM) diffracting the light beam in backward direction. A mirror arranged between the first and second partial areas of the SLM reflects the light beam coming from the first partial area towards the second partial area. A wave plate arranged between the first partial area and the second partial area of the SLM rotates the polarization directions of both components of the light beam by 90°. The mirror reflects the first and second components of the light beam as parallel bundles of light rays resulting in a lateral offset between the first and second components of the light beam behind the second partial area of the SLM.
    Type: Application
    Filed: November 4, 2015
    Publication date: May 4, 2017
    Inventors: Matthias Reuss, Andreas Schoenle, Lars Kastrup, Gerald Donnert, Benjamin Harke
  • Patent number: 9632297
    Abstract: A device comprises two polarization-selective optical elements for separately modulating wave fronts of two components of a collimated light beam, which are transversally polarized in orthogonal directions. The two polarization-selective optical elements are first and second partial areas of one spatial light modulator (SLM) diffracting the light beam in backward direction. A mirror arranged between the first and second partial areas of the SLM reflects the light beam coming from the first partial area towards the second partial area. A wave plate arranged between the first partial area and the second partial area of the SLM rotates the polarization directions of both components of the light beam by 90°. The mirror reflects the first and second components of the light beam as parallel bundles of light rays resulting in a lateral offset between the first and second components of the light beam behind the second partial area of the SLM.
    Type: Grant
    Filed: November 4, 2015
    Date of Patent: April 25, 2017
    Assignee: ABBERIOR INSTRUMENTS GMBH
    Inventors: Matthias Reuss, Andreas Schoenle, Lars Kastrup, Gerald Donnert, Benjamin Harke
  • Publication number: 20160187259
    Abstract: Method of optical microscopy by scanning a sample containing an excitable species, the method comprising: directing a first and a second light beam onto respective, partially overlapped areas of the sample, wherein the first light beam is provided for exciting members of the excitable species, and the second light beam is provided for reducing the number of excited members; detecting an optical signal coming from the sample, comprising a main component and a spurious component, during consecutive first and second time gates, the first time gate being provided for detecting the optical signal for a time interval during which the main component and the spurious component are both present, and the second time gate being provided for detecting the optical signal for a time interval during which the main component tends to or is zero; processing the detected optical signal to separate its main component.
    Type: Application
    Filed: August 12, 2014
    Publication date: June 30, 2016
    Applicant: FONDAZIONE ISTITUTO ITALIANO DI TECNOLOGIA
    Inventors: Giuseppe VICIDOMINI, Benjamin HARKE, Alberto DIASPRO