Patents by Inventor Daniel C. Pregibon

Daniel C. Pregibon has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20230193352
    Abstract: The present invention provides, among other things, methods of detecting target nucleic acid, comprising steps of: a) contacting a sample with one or more capturing probes, each comprising at least one target capturing sequence, under conditions that permit the one or more capturing probes to capture one or more target nucleic acids in the sample; b) amplifying the captured one or more target nucleic acids in a reaction mixture comprising a detectable entity such that the amplified one or more target nucleic acids are labeled with the detectable entity; c) incubating amplification product with a plurality of re-capturing probes such that the amplified one or more target nucleic acids are re-captured by the plurality of the re-capturing probes; and d) detecting signal generated by detectable entity associated with the re-captured amplified one or more target nucleic acids, wherein the presence and/or abundance of the detectable signal indicates the presence and/or abundance of the one or more target nucleic ac
    Type: Application
    Filed: July 11, 2022
    Publication date: June 22, 2023
    Applicant: FIREFLY BIOWORKS, INC.
    Inventors: Daniel C. PREGIBON, Isaac Stoner, Anthony FUSCO, Michael R. TACKETT
  • Publication number: 20160333398
    Abstract: The present invention provides, among other things, methods and compositions for encoding a substrate for detecting and quantifying target nucleic acids.
    Type: Application
    Filed: February 12, 2016
    Publication date: November 17, 2016
    Inventors: Daniel C. Pregibon, Isaac Stoner, Andreas Windemuth, Timothy Erps
  • Patent number: 9476101
    Abstract: The present invention provides, among other things, methods and systems for characterizing multifunctional objects using a flow-through device, such as, a flow cytometer. In some embodiments, an inventive method according to the present invention includes one more steps of (a) interrogating a plurality of objects (e.g., particles), wherein each individual object (e.g., particle) comprises one or more interrogation regions detectable as a sequence of events; (b) recording multiple events, wherein each individual event corresponds to each individual interrogation region detectable above a pre-determined triggering threshold; (c) grouping the recorded multiple events, and (d) characterizing the plurality of objects based on the grouped events.
    Type: Grant
    Filed: June 7, 2011
    Date of Patent: October 25, 2016
    Assignee: Firefly Bioworks, Inc.
    Inventors: Daniel C. Pregibon, Davide M. Marini, Isaac Stoner, Andreas Windemuth, Timothy Erps
  • Patent number: 9310361
    Abstract: Method for making multifunctional particles. The method includes flowing a first monomer stream loaded with a fluorescent entity along a microfluidic channel and flowing a second monomer stream loaded with a probe adjacent to the first monomer stream along the microfluidic channel. The monomer streams are polymerized to synthesize particles having a fluorescent, graphically encoded region and a probe-loaded region.
    Type: Grant
    Filed: April 8, 2011
    Date of Patent: April 12, 2016
    Assignee: Massachusetts Institute of Technology
    Inventors: Patrick S. Doyle, Daniel C. Pregibon
  • Patent number: 9290816
    Abstract: The present invention provides, among other things, methods and compositions for encoding a substrate for detecting and quantifying target nucleic acids.
    Type: Grant
    Filed: November 19, 2013
    Date of Patent: March 22, 2016
    Assignee: Firefly Bioworks Inc.
    Inventors: Daniel C. Pregibon, Isaac Stoner, Andreas Windemuth, Timothy Erps
  • Publication number: 20160060682
    Abstract: The present invention provides, among other things, methods of detecting target nucleic acid, comprising steps of: a) contacting a sample with one or more capturing probes, each comprising at least one target capturing sequence, under conditions that permit the one or more capturing probes to capture one or more target nucleic acids in the sample; b) amplifying the captured one or more target nucleic acids in a reaction mixture comprising a detectable entity such that the amplified one or more target nucleic acids are labeled with the detectable entity; c) incubating amplification product with a plurality of re-capturing probes such that the amplified one or more target nucleic acids are re-captured by the plurality of the re-capturing probes; and d) detecting signal generated by detectable entity associated with the re-captured amplified one or more target nucleic acids, wherein the presence and/or abundance of the detectable signal indicates the presence and/or abundance of the one or more target nucleic ac
    Type: Application
    Filed: April 25, 2014
    Publication date: March 3, 2016
    Inventors: Daniel C. Pregibon, Isaac Stoner, Anthony Fusco, Michael R. Tackett
  • Publication number: 20150005198
    Abstract: The present invention provides, among other things, methods and compositions for encoding a substrate for detecting and quantifying target nucleic acids.
    Type: Application
    Filed: November 19, 2013
    Publication date: January 1, 2015
    Applicant: Firefly Bioworks, Inc.
    Inventors: Daniel C. Pregibon, Isaac Stoner, Andreas Windemuth, Timothy Erps
  • Patent number: 8609337
    Abstract: The present invention provides, among other things, methods and compositions for encoding a substrate for detecting and quantifying target nucleic acids.
    Type: Grant
    Filed: August 7, 2012
    Date of Patent: December 17, 2013
    Assignee: Firefly BioWorks, Inc.
    Inventors: Daniel C. Pregibon, Isaac Stoner, Andreas Windemuth, Timothy Erps
  • Publication number: 20130210653
    Abstract: The present invention provides, among other things, methods and systems for characterizing multifunctional objects using a flow-through device, such as, a flow cytometer. In some embodiments, an inventive method according to the present invention includes one more steps of (a) interrogating a plurality of objects (e.g., particles), wherein each individual object (e.g., particle) comprises one or more interrogation regions detectable as a sequence of events; (b) recording multiple events, wherein each individual event corresponds to each individual interrogation region detectable above a pre-determined triggering threshold; (c) grouping the recorded multiple events, and (d) characterizing the plurality of objects based on the grouped events.
    Type: Application
    Filed: June 7, 2011
    Publication date: August 15, 2013
    Applicant: FIREFLY BIOWORKS, INC.
    Inventors: Daniel C. Pregibon, Davide M. Marini, Isaac Stoner, Andreas Windemuth, Timothy Erps
  • Publication number: 20120316082
    Abstract: The present invention provides, among other things, methods and compositions for detecting and quantifying target nucleic acids via post-hybridization labeling.
    Type: Application
    Filed: August 7, 2012
    Publication date: December 13, 2012
    Applicant: FIREFLY BIOWORKS, INC.
    Inventors: Daniel C. Pregibon, Isaac Stoner, Andreas Windemuth, Timothy Erps
  • Publication number: 20120309651
    Abstract: The present invention provides, among other things, methods and compositions for encoding a substrate for detecting and quantifying target nucleic acids.
    Type: Application
    Filed: August 7, 2012
    Publication date: December 6, 2012
    Applicant: FIREFLY BIOWORKS, INC.
    Inventors: Daniel C. Pregibon, Isaac Stoner, Andreas Windemuth, Timothy Erps
  • Publication number: 20110263747
    Abstract: Method for making multifunctional particles. The method includes flowing a first monomer stream loaded with a fluorescent entity along a microfluidic channel and flowing a second monomer stream loaded with a probe adjacent to the first monomer stream along the microfluidic channel. The monomer streams are polymerized to synthesize particles having a fluorescent, graphically encoded region and a probe-loaded region.
    Type: Application
    Filed: April 8, 2011
    Publication date: October 27, 2011
    Applicant: MASSACHUSETTS INSTITUTE OF TECHNOLOGY
    Inventors: Patrick S. Doyle, Daniel C. Pregibon
  • Patent number: 7947487
    Abstract: Method for making multifunctional particles. The method includes flowing a first monomer stream loaded with a fluorescent entity along a microfluidic channel and flowing a second monomer stream loaded with a probe adjacent to the first monomer stream along the microfluidic channel. The monomer streams are polymerized to synthesize particles having a fluorescent, graphically encoded region and a probe-loaded region.
    Type: Grant
    Filed: October 4, 2007
    Date of Patent: May 24, 2011
    Assignee: Massachusetts Institute of Technology
    Inventors: Patrick S. Doyle, Daniel C. Pregibon
  • Publication number: 20100172898
    Abstract: In a method for synthesizing polymeric microstructures, a monomer stream is flowed, at a selected flow rate, through a fluidic channel. At least one shaped pulse of illumination is projected to the monomer stream, defining in the monomer stream a shape of at least one microstructure corresponding to the illumination pulse shape while polymerizing that microstructure shape in the monomer stream by the illumination pulse. An article of manufacture includes a non-spheroidal polymeric microstructure that has a plurality of distinct material regions.
    Type: Application
    Filed: March 15, 2010
    Publication date: July 8, 2010
    Applicant: MASSACHUSETTS INSTITUTE OF TECHNOLOGY
    Inventors: Patrick S. DOYLE, Daniel C. PREGIBON, Dhananjay DENDUKURI
  • Patent number: 7709544
    Abstract: In a method for synthesizing polymeric microstructures, a monomer stream is flowed, at a selected flow rate, through a fluidic channel. At least one shaped pulse of illumination is projected to the monomer stream, defining in the monomer stream a shape of at least one microstructure corresponding to the illumination pulse shape while polymerizing that microstructure shape in the monomer stream by the illumination pulse.
    Type: Grant
    Filed: October 25, 2006
    Date of Patent: May 4, 2010
    Assignee: Massachusetts Institute of Technology
    Inventors: Patrick S. Doyle, Daniel C. Pregibon, Dhananjay Dendukuri