Patents by Inventor David R. Cox

David R. Cox has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20040023275
    Abstract: The present invention relates to methods for identifying variations that occur in the human genome, relating these variations to one another, and, ultimately, relating these variations to the genetic bases of phenotype such as disease resistance, disease susceptibility or drug response. The methods allow for, once variants have been identified, determining variant haplotype blocks and patterns, and further, resolving ambiguities in the haplotype block and pattern data sets.
    Type: Application
    Filed: April 29, 2003
    Publication date: February 5, 2004
    Applicant: Perlegen Sciences, Inc.
    Inventors: Anthony J. Berno, Nila Patil, David R. Cox, David A. Hinds
  • Publication number: 20040023237
    Abstract: The present invention relates to methods for identifying variations that occur in the human genome, relating these variations to one another, and, ultimately, relating these variations to the genetic bases of phenotype such as disease resistance, disease susceptibility or drug response. The methods allow for, once variants have been identified, analysis of SNPs in coding regions of control and experimental populations.
    Type: Application
    Filed: October 31, 2002
    Publication date: February 5, 2004
    Applicant: Perelegen Sciences Inc.
    Inventors: Nila Patil, David R. Cox
  • Publication number: 20040006938
    Abstract: Removable door jamb assembly guard, guarded jamb assembly, and methods of controlling a doorway. The guard preferably covers the full length of the jamb assembly, and the full width of the jamb assembly between an outer trim element and the door-arresting surface. The guard has a central section, a door leg section, an outer leg section disposed outwardly of the central section, and optionally a transition section between the central section and the outer leg section. Preferred embodiments of the guard can be installed on a jamb assembly while a conventional door slab is mounted to the jamb assembly, and the door slab can be closed and opened without the guard interfering with such operation of the door slab.
    Type: Application
    Filed: July 8, 2003
    Publication date: January 15, 2004
    Applicant: Custom Millworking, Inc.
    Inventors: Glenn P. Schiffmann, David R. Cox
  • Publication number: 20030186244
    Abstract: Improved pharmaceutical and diagnostic business systems and methods are disclosed. One or more genomes are scanned for single nucleotide polymorphisms. The polymorphisms are assigned to haplotype blocks, and representative SNPs from the haplotype blocks are used in association studies for pharmaceutical and diagnostic development.
    Type: Application
    Filed: March 26, 2002
    Publication date: October 2, 2003
    Applicant: Perlegen Sciences, Inc.
    Inventors: Bradley A. Margus, David R. Cox, Stephen P.A. Fodor
  • Publication number: 20030175253
    Abstract: The present invention provides methods for diagnosing mental disorders.
    Type: Application
    Filed: November 12, 2002
    Publication date: September 18, 2003
    Inventors: Huda Akil, William E. Bunney, Sharon Burke, Prabhakara V. Choudary, David R. Cox, Simon Evans, Edward G. Jones, Jun Li, Juan F. Lopez, Richard M. Myers, Robert Thompson, Marquis P. Vawter, Stanley J. Watson
  • Publication number: 20030157488
    Abstract: Improved systems and methods for performing genetic analyses. Full genomic DNA scans are performed on the genetic DNA from a plurality of individuals to identify genetic variants. For those variants, but not based on a full genetic DNA scan, the variants alone are scanned in additional individuals to identify blocks of the variants that tend to be inherited together.
    Type: Application
    Filed: January 7, 2002
    Publication date: August 21, 2003
    Applicant: Perlegen Sciences, Inc.
    Inventors: David R. Cox, Bradley A. Margus
  • Publication number: 20030099964
    Abstract: The present invention relates to methods for identifying variations that occur in the human genome and relating these variations to the genetic basis of disease and drug response. In particular, the present invention relates to identifying individual SNPs, determining SNP haplotype blocks and patterns, and, further, using the SNP haplotype blocks and patterns to dissect the genetic bases of disease and drug response. The methods of the present invention are useful in whole genome analysis.
    Type: Application
    Filed: March 26, 2002
    Publication date: May 29, 2003
    Applicant: Perlegen Sciences, Inc.
    Inventors: Nila Patil, David R. Cox, Anthony J. Berno, David A. Hinds
  • Publication number: 20030077633
    Abstract: The present invention includes the use of any of the polymorphisms, SNP haplotype blocks or SNP haplotype patterns. In one embodiment, susceptibility to a phenotype resulting from an allele or marker in linkage disequilibrium with such polymorphic forms is evaluated. Novel therapeutic and diagnostic compounds and methods are also disclosed.
    Type: Application
    Filed: August 22, 2002
    Publication date: April 24, 2003
    Applicant: Perlegen Sciences, Inc.
    Inventors: David R. Cox, Deana A. Arnold
  • Publication number: 20030003472
    Abstract: Mismatch Repair Detection (MRD), a novel method for DNA-variation detection, utilizes bacteria to detect mismatches by a change in expression of a marker gene. DNA fragments to be screened for variation are cloned into two MRD plasmids, and bacteria are transformed with heteroduplexes of these constructs. Resulting colonies express the marker gene in the absence of a mismatch, and-lack expression in the presence of a mismatch. MRD is capable of detecting a single mismatch within 10 kb of DNA. In addition, MRD can analyze many fragments simultaneously, offering a powerful method for high-throughput genotyping and mutation detection.
    Type: Application
    Filed: February 20, 2002
    Publication date: January 2, 2003
    Inventors: David R. Cox, Malek Faham, Siamak Baharloo
  • Publication number: 20020172966
    Abstract: Mismatch Repair Detection (MRD), a novel method for DNA-variation detection, utilizes bacteria to detect mismatches by a change in expression of a marker gene. DNA fragments to be screened for variation are cloned into two MRD plasmids, and bacteria are transformed with heteroduplexes of these constructs. Resulting colonies express the marker gene in the absence of a mismatch, and lack expression in the presence of a mismatch. MRD is capable of detecting a single mismatch within 10 kb of DNA. In addition, MRD can analyze many fragments simultaneously, offering a powerful method for high-throughput genotyping and mutation detection.
    Type: Application
    Filed: February 8, 2002
    Publication date: November 21, 2002
    Inventors: David R. Cox, Malek Faham, Siamak Baharloo
  • Publication number: 20020164634
    Abstract: The invention provides several methods for reducing the complexity of a population of nucleic acids prior to performing an analysis of the nucleic acids on a nucleic acid probe array. The methods result in a subset of the initial population enriched for a desired property, or lacking nucleic acids having an undesired property. The resulting nucleic acids in the subset are then applied to the array for various types of analysis. The methods are particularly useful for analyzing populations having a high degree of complexity, for example, chromosomal-derived DNA, or whole genomic DNA, or mRNA population. In addition, such methods allow for analysis of pooled samples.
    Type: Application
    Filed: April 24, 2002
    Publication date: November 7, 2002
    Applicant: Perlegen Sciences, Inc.
    Inventors: Nila Patil, David R. Cox, Charit Pethiyagoda, Kelly A. Frazer
  • Patent number: 6432635
    Abstract: An isolated nucleic acid molecule, wherein the molecule contains: (1) a first sequence consisting of human cystatin B genomic DNA as set forth in FIG. 3 (SEQ ID NO:1); (2) a second sequence, wherein said second sequence is a subsequence of said first sequence, is at least nucleotides in length, and is not present in human cystatin B cDNA; (3) a third sequence in which at least one nucleotide of said first or second sequences is replaced by a different nucleotide; or (4) a fourth sequence complementary to any of said first, second or third sequences; with the proviso that (I) if said molecule is an RNA molecule, U replaces T in said sequence of said molecule, and (ii) said third sequence is at least 95% identical to said first or second sequence.
    Type: Grant
    Filed: March 18, 1997
    Date of Patent: August 13, 2002
    Assignees: Helsinki University Licensing Ltd. Oy, The Board of Trustees of the Leland Stanford Jr. Univeristy
    Inventors: Richard M. Myers, David R. Cox, Len A. Pennacchio, Anna-Elina Lehesjoki, Albert De La Chapelle
  • Patent number: 6406847
    Abstract: Mismatch Repair Detection (MRD), a novel method for DNA-variation detection, utilizes bacteria to detect mismatches by a change in expression of a marker gene. DNA fragments to be screened for variation are cloned into two MRD plasmids, and bacteria are transformed with heteroduplexes of these constructs. Resulting colonies express the marker gene in the absence of a mismatch, and lack expression in the presence of a mismatch. MRD is capable of detecting a single mismatch within 10 kb of DNA. In addition, MRD can analyze many fragments simultaneously, offering a powerful method for high-throughput genotyping and mutation detection.
    Type: Grant
    Filed: March 17, 1999
    Date of Patent: June 18, 2002
    Assignees: The Board of Trustees of the Leland Stanford Junior University, The Regents of the University of California
    Inventors: David R. Cox, Malek Faham, Siamak Baharloo
  • Patent number: 5633029
    Abstract: A suspension containing a large number of very small ice crystals in a sugar solution is obtained by mixing a concentrated sugar solution with a less concentrated sugar solution or water, both solutions having been cooled to a temperature of from just above the metastable limit temperature of the respective solution to just above the melting point of the respective solution prior to mixing.
    Type: Grant
    Filed: November 30, 1995
    Date of Patent: May 27, 1997
    Assignee: Good Humor-Breyers Ice Cream, Division of Conopco, Inc.
    Inventors: David R. Cox, Stephen R. Moore
  • Patent number: D433350
    Type: Grant
    Filed: October 28, 1999
    Date of Patent: November 7, 2000
    Inventors: Joseph T Cox, David R Cox