Patents by Inventor Haibin Shi

Haibin Shi has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20240194289
    Abstract: The present invention provides a computational method for designing artificial variants which have activity towards non-natural substrates. The present invention provides a special method to process stability evaluation results and creatively combines a process of calculating free energy barrier, which can improve the accuracy of the virtual screening of enzyme variants. The computational method disclosed by this invention greatly reduce the number of variants to be constructed and tested in the wet lab. In some cases, this method achieved the effect of enzyme engineering that cannot be achieved by traditional directed enzyme evolution methods.
    Type: Application
    Filed: April 20, 2022
    Publication date: June 13, 2024
    Applicant: ENZYMASTER (NINGBO) BIO-ENGINEERING CO., LTD.
    Inventors: Junpeng XU, Shumin SHI, Marco BOCOLA, Baoqin CAI, Haibin CHEN
  • Publication number: 20240185947
    Abstract: The present invention provides ketoreductase variants having activity on both (R)-(?)-1,3-butanediol and (S)-(+)-1,3-butanediol, and the computational methodology for designing the above mentioned ketoreductase variants. The ketoreductase variants disclosed in the present application can catalyze the reaction of synthesizing 4-hydroxy-2-butanone from racemic 1,3-butanediol, which has industrial application prospects.
    Type: Application
    Filed: April 20, 2022
    Publication date: June 6, 2024
    Applicant: ENZYMASTER (NINGBO) BIO-ENGINEERING CO., LTD.
    Inventors: Shumin SHI, Junpeng XU, Marco BOCOLA, Baoqin CAI, Haibin CHEN, Mengying YU, Xiao LUO, Yafang LIANG, Kuifang HE, Qinli PENG
  • Publication number: 20240182395
    Abstract: A method for making intermediate compounds suitable for making muscenone, the compositions made by said methods, the various uses of said compositions, and enzyme variants useful in said methods.
    Type: Application
    Filed: July 20, 2021
    Publication date: June 6, 2024
    Inventors: Marc BIERMANN, Fabian RUETHI, Marco BOCOLA, Haibin CHEN, Kuifang HE, Shumin SHI
  • Patent number: 11999976
    Abstract: Provided are amino acid sequences of ketoreductase polypeptides that are useful for asymmetrically synthesizing chiral alcohol compounds, its preparation process as well as reaction process under industrial-relevant conditions. Also provided are polynucleotide sequences encoding engineered ketoreductase polypeptides, engineered host cells capable of expressing engineered ketoreductase polypeptides, and methods of producing chiral alcohol compounds using engineered ketoreductase polypeptides. Compared to other enzymes, the engineered ketoreductase polypeptides provided by the invention have better catalytic activity and thermal stability, allowing purification of the enzyme solution by heat treatment, which is advantageous for the production of enzymes and the industrial application of enzymatic reactions.
    Type: Grant
    Filed: December 11, 2019
    Date of Patent: June 4, 2024
    Assignee: Enzymaster (Ningbo) Bio-Engineering Co., Ltd
    Inventors: Haibin Chen, Chuanyang Shang, Baoqin Cai, Marco Bocola, Shumin Shi, Ruimei Hong, Lei Sun, Yong Koy Bong
  • Publication number: 20230407169
    Abstract: The present invention disclosed a red-light-mediated nucleic acid anchoring fluorescent probe and its preparation method and application. The fluorescent probe has the capability of taking a crosslinking reaction with RNA in cytoplasm under singlet oxygen mediation, and imaging of tumor tissues in a long window period is achieved. Moreover, it is found that by means of the probe, after crosslinking of RNA, a severe apoptosis phenomenon of tumor cells occurs, and the integration of diagnosis and treatment of tumors is achieved.
    Type: Application
    Filed: November 12, 2020
    Publication date: December 21, 2023
    Inventors: Haibin SHI, Shuyue YE
  • Publication number: 20220257798
    Abstract: The present invention discloses H2O2 responsive crosslinking NIR molecular probe for tumor microenvironment and application therefor. The preparation method includes the following steps: the amide condensation of 2-propynylamine and Fmoc-Lys(Boc)-OH to obtain compound A01-01; removing protecting groups from compound A01-01, to obtain compound C1-2; reacting compound C1-2 and NHS-activated (3-carboxypropyl)triphenylphosphonium bromide, to obtain compound C1-3; removing protecting groups from compound C1-3, to obtain compound C1-4; reacting compound C1-4 with NHS-activated 3,5-dioxocyclohexane carboxylic acid, to obtain a compound C1-5; and reacting compound C1-5 with NIR dye, to obtain a H2O2 responsive crosslinking NIR molecular probe for tumor microenvironment.
    Type: Application
    Filed: July 27, 2020
    Publication date: August 18, 2022
    Inventors: Haibin SHI, Yinjia GAO
  • Patent number: 10753941
    Abstract: The development of fluorescent bioprobes comprising organic fluorescent compounds that exhibit aggregation induced emission (AIE) properties, methods of producing the same, and their practical applications for in vitro and in vivo bioimaging.
    Type: Grant
    Filed: September 3, 2012
    Date of Patent: August 25, 2020
    Assignees: The Hong Kong University of Science and Technology, National University of Singapore
    Inventors: Benzhong Tang, Wei Qin, Jianzhao Liu, Sijie Chen, Tsz Kin Kwok, Bin Liu, Kai Li, Dan Ding, Haibin Shi, Jun Long Geng, Jingzhi Sun, Anjun Qin, Qiuli Zhao
  • Patent number: 10570150
    Abstract: The present invention discloses a probe useful for the selective detection of metallo-beta-lactamases, in particular carbapenemases, thereby distinguishing those species of bacteria that are carbapenem-resistant from bacterial strains that are sensitive. Cephalospori based probes that have the 6,7 R,R configuration are susceptible to cleavage by beta-lactamases but cannot distinguish between cleavage by metallo-beta-lactamases and other beta-lactamases. By modifying a side group of the cephalosporin, selectivity can be introduced allowing the probes to distinguish between various types of metallo-beta-lactamases.
    Type: Grant
    Filed: January 15, 2015
    Date of Patent: February 25, 2020
    Assignee: The Board of Trustees of the Leland Stanford Junior University
    Inventors: Jianghong Rao, Haibin Shi
  • Publication number: 20160333027
    Abstract: The present invention discloses a probe useful for the selective detection of metallo-beta-lactamases, in particular carbapenemases, thereby distinguishing those species of bacteria that are carbapenem-resistant from bacterial strains that are sensitive. Cephalospori based probes that have the 6,7 R,R configuration are susceptible to cleavage by beta-lactamases but cannot distinguish between cleavage by metallo-beta-lactamases and other beta-lactamases.
    Type: Application
    Filed: January 15, 2015
    Publication date: November 17, 2016
    Inventors: JIANGHONG RAO, HAIBIN SHI
  • Patent number: 9109155
    Abstract: The development of a series of fluorescent materials including heterocycle-functionalized luminogens with aggregation-induced/enhanced emission (AIE/AEE), long wavelength emission, and high solid state fluorescence quantum efficiency is contemplated. The described fluorescent materials are promising candidates in selective luminescence-based chemosensor for Hg2+ or ATP, fluorescent staining for mitochondria in living cells with high photostability, stimuli-responsive luminescent materials, and materials for optical waveguides. In addition, these heterocycle-functionalized luminogens are particularly useful as fluorescent labels for biopolymers such as peptides, antibodies, or nucleic acids, making them useful as AIE-active biocompatible probes for clinical cancer imaging and diagnostics.
    Type: Grant
    Filed: May 24, 2013
    Date of Patent: August 18, 2015
    Assignees: The Hong Kong University of Science and Technology, National University of Singapore
    Inventors: Benzhong Tang, Wing Yip Lam, Na Zhao, Min Li, Bin Liu, Haibin Shi, Dan Ding
  • Publication number: 20140348753
    Abstract: The development of a series of fluorescent materials including heterocycle-functionalized luminogens with aggregation-induced/enhanced emission (AIE/AEE), long wavelength emission, and high solid state fluorescence quantum efficiency is contemplated. The described fluorescent materials are promising candidates in selective luminescence-based chemosensor for Hg2+ or ATP, fluorescent staining for mitochondria in living cells with high photostability, stimuli-responsive luminescent materials, and materials for optical waveguides. In addition, these heterocycle-functionalized luminogens are particularly useful as fluorescent labels for biopolymers such as peptides, antibodies, or nucleic acids, making them useful as AIE-active biocompatible probes for clinical cancer imaging and diagnostics.
    Type: Application
    Filed: May 24, 2013
    Publication date: November 27, 2014
    Inventors: Benzhong TANG, Wing Yip LAM, Na ZHAO, Min LI, Bin LIU, Haibin SHI, Dan DING
  • Publication number: 20140328764
    Abstract: The development of fluorescent bioprobes comprising organic fluorescent compounds that exhibit aggregation induced emission (AIE) properties, methods of producing the same, and their practical applications for in vitro and in vivo bioimaging.
    Type: Application
    Filed: September 3, 2012
    Publication date: November 6, 2014
    Applicants: NATIONAL UNIVERSITY OF SINGAPORE, THE HONG KONG UNIVERSITY OF SCIENCE AND TECHNOLOGY
    Inventors: Benzhong Tang, Wei Qin, Jianzhao Liu, Sijie Chen, Tsz Kin Kwok, Bin Liu, Kai Li, Dan Ding, Haibin Shi, Jun Long Geng, Jingzhi Sun, Anjun Qin, Qiuli Zhao
  • Patent number: 8198039
    Abstract: Provided herein are biosensors that comprise a biological signal source linked to a substrate by a peptide nucleic acid spacer and methods of use of the biosensor. In one embodiment, the biosensor is used to detect prostate-specific antigen.
    Type: Grant
    Filed: September 4, 2008
    Date of Patent: June 12, 2012
    Assignee: University of Pittsburgh—Of the Commonwealth System of Higher Education
    Inventors: Haibin Shi, Joanne I. Yeh
  • Publication number: 20090061451
    Abstract: Provided herein are biosensors that comprise a biological signal source linked to a substrate by a peptide nucleic acid spacer and methods of use of the biosensor. In one embodiment, the biosensor is used to detect prostate-specific antigen.
    Type: Application
    Filed: September 4, 2008
    Publication date: March 5, 2009
    Inventors: Catalina Achim, Haibin Shi, Joanne I. Yeh