Abstract: A computer system for determining an optimized patient treatment protocol is adapted to perform the steps of: (1) obtaining a first cost of labor and materials, patient satisfaction level, and protocol quality indicator associated with a first proposed treatment protocol (PTP); (2) obtaining a second cost of labor and materials, patient satisfaction level, and protocol quality indicator associated with a second proposed treatment protocol (PTP); (3) assigning a first rating to PTP based on the first cost of labor and material, first patient satisfaction level and first protocol quality indicator; (4) assigning a second rating to the second PTP based on the second cost of labor and material, second patient satisfaction level and second protocol quality indicator; (5) performing a comparison of the first and second ratings; and (6) determining which of the first and second proposed treatment protocols to implement as the optimized patient treatment protocol.