Patents by Inventor James L. Winkler
James L. Winkler has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).
-
Patent number: 6733977Abstract: A body 300 having a cavity 310 for mounting a substrate 120 fabricated with probe sequences at known locations according to the methods disclosed in U.S. Pat. No. 5,143,854 and PCT WO 92/10092 or others, is provided. The cavity includes inlets 350 and 360 for introducing selected fluids into the cavity to contact the probes. Accordingly, a commercially feasible device for use in high throughput assay systems is provided.Type: GrantFiled: August 28, 2002Date of Patent: May 11, 2004Assignee: Affymetrix, Inc.Inventors: Donald M. Besemer, Virginia W. Goss, James L. Winkler
-
Patent number: 6705754Abstract: The invention provides exemplary devices, systems and methods for mixing of fluids, such as biological fluids. One exemplary device comprises is particularly adapted for holding at least one cartridge having a chamber containing a biological fluid, with the chamber having a generally planar face. The device comprises a rotatable body having a rotational axis. The rotatable body includes at least one mounting element which is adapted to mount the rotatable body such that the face of the chamber is generally perpendicular to the rotational axis.Type: GrantFiled: January 30, 2002Date of Patent: March 16, 2004Assignee: Affymetrix, Inc.Inventors: James L. Winkler, Mark Chee, David Lockhart
-
Patent number: 6687395Abstract: The present invention provides an improved integrated system for biological marker identification. The system uses Microvolume Laser Scanning Microscopy (MLSC) in order to measure patterns of expression of biological markers in biological fluids. The system includes improved instrumentation for performing MLSC, and also includes improved particle detection and analysis methods. The system further comprises an informatics architecture for the analysis of data obtained from the MLSC in tandem with other medical information.Type: GrantFiled: April 26, 2000Date of Patent: February 3, 2004Assignee: SurroMed, Inc.Inventors: Louis J. Dietz, Ian Walton, Chih-Hua Chung, Scott Norton, James L. Winkler, Aaron B. Kantor, Byron Lee, Shalom Tsur
-
Patent number: 6667394Abstract: A method and apparatus for selectively applying a print material onto a substrate for the synthesis of an array of oligonucleotides at selected regions of a substrate. The print material includes a barrier material, a monomer sequence, a nucleoside, a deprotection agent, a carrier material, among other materials. The method and apparatus also relies upon standard DMT based chemistry, and a vapor phase deprotection agent such as solid TCA and the like.Type: GrantFiled: April 24, 2001Date of Patent: December 23, 2003Assignee: Affymetrix, Inc.Inventors: R. Fabian Pease, Glenn McGall, Martin J. Goldberg, Richard P. Rava, Stephen P. A. Fodor, Virginia Goss, Lubert Stryer, James L. Winkler
-
Publication number: 20030209427Abstract: Segmented nanoparticles are manufactured according to different methods and in various apparatuses.Type: ApplicationFiled: April 11, 2003Publication date: November 13, 2003Applicant: NANOPLEX, TECHNOLOGIESInventors: Michael J. Natan, Thomas E. Mallouk, Benjamin R. Martin, Brian D. Reiss, Louis J. Dietz, James L. Winkler
-
Publication number: 20030175409Abstract: A method and apparatus for selectively applying a print material onto a substrate for the synthesis of an array of oligonucleotides at selected regions of a substrate. The print material includes a barrier material, a monomer sequence, a nucleoside, a deprotection agent, a carrier material, among other materials. The method and apparatus also relies upon standard DMT based chemistry, and a vapor phase deprotection agent such as solid TCA and the like.Type: ApplicationFiled: March 13, 2003Publication date: September 18, 2003Applicant: Affymetrix, Inc.Inventors: R. Fabian Pease, Glenn McGall, Martin. J. Goldberg, Richard P. Rava, Stephen P.A. Fodor, Virginia Goss, Lubert Stryer, James L. Winkler
-
Publication number: 20030082831Abstract: A synthetic strategy for the creation of large scale chemical diversity. Solid-phase chemistry, photolabile protecting groups, and photolithography are used to achieve light-directed spatially-addressable parallel chemical synthesis. Binary masking techniques are utilized in one embodiment. A reactor system, photoremovable protective groups, and improved data collection and handling techniques are also disclosed. A technique for screening linker molecules is also provided.Type: ApplicationFiled: September 30, 2002Publication date: May 1, 2003Applicant: AFFYMAX TECHNOLOGIES, N.V., a Netherlands Antilles corporationInventors: Stephen P.A. Fodor, Lubert Stryer, James L. Winkler, Christopher P. Holmes, Dennis W. Solas
-
Patent number: 6551817Abstract: A body 300 having a cavity 310 for mounting a substrate 120 fabricated with probe sequences at known locations according to the methods disclosed in U.S. Pat. No. 5,143,854 and PCT WO 92/10092 or others, is provided. The cavity includes inlets 350 and 360 for introducing selected fluids into the cavity to contact the probes. Accordingly, a commercially feasible device for use in high throughput assay systems is provided.Type: GrantFiled: January 14, 2002Date of Patent: April 22, 2003Assignee: Affymetrix, Inc.Inventors: Donald M. Besemer, Virginia W. Goss, James L. Winkler
-
Patent number: 6552784Abstract: A cuvette cartridge for optical measurements is disclosed herein, the cartridge comprising a flat, adhesive sheet having a selected thickness that defines an optical path length perpendicular to the longitudinal axis of such sheet; wherein a portion of the adhesive sheet is cut out to define at least one optical chamber of a desired length; wherein the adhesive sheet is placed between a first flat sheet and a second flat sheet, the first flat sheet comprising at least one inlet hole and at least one outlet hole, the vent hole being located at a first end of the optical chamber and the inlet hole being located at a second end of the optical chamber. An integrated analytical system employing this cartridge and optionally including a vacuum chuck for holding and registering the cartridge are also disclosed.Type: GrantFiled: April 20, 2000Date of Patent: April 22, 2003Assignee: SurroMed, Inc.Inventors: Louis J. Dietz, James L. Winkler
-
Publication number: 20030003499Abstract: A body 300 having a cavity 310 for mounting a substrate 120 fabricated with probe sequences at known locations according to the methods disclosed in U.S. Pat. No. 5,143,854 and PCT WO 92/10092 or others, is provided. The cavity includes inlets 350 and 360 for introducing selected fluids into the cavity to contact the probes. Accordingly, a commercially feasible device for use in high throughput assay systems is provided.Type: ApplicationFiled: August 28, 2002Publication date: January 2, 2003Applicant: AFFYMETRIX, INC.Inventors: Donald M. Besemer, Virginia W. Goss, James L. Winkler
-
Patent number: 6491871Abstract: A synthetic strategy for the creation of large scale chemical diversity. Solid-phase chemistry, photolabile protecting groups, and photolithography are used to achieve light-directed spatially-addressable parallel chemical synthesis. Binary masking techniques are utilized in one embodiment. A reactor system, photoremovable protective groups, and improved data collection and handling techniques are also disclosed. A technique for screening linker molecules is also provided.Type: GrantFiled: December 9, 1997Date of Patent: December 10, 2002Assignee: Affymetrix, Inc.Inventors: Stephen P.A. Fodor, James L. Winkler
-
Publication number: 20020147319Abstract: A method and apparatus for selectively applying a print material onto a substrate for the synthesis of an array of oligonucleotides at selected regions of a substrate. The print material includes a barrier material, a monomer sequence, a nucleoside, a deprotection agent, a carrier material, among other materials. The method and apparatus also relies upon standard DMT based chemistry, and a vapor phase deprotection agent such as solid TCA and the like.Type: ApplicationFiled: April 24, 2001Publication date: October 10, 2002Applicant: Affymetrix, Inc.Inventors: R. Fabian Pease, Glenn McGall, Martin J. Goldberg, Richard P. Rava, Stephen P.A. Fodor, Virginia Goss, Lubert Stryer, James L. Winkler
-
Publication number: 20020104762Abstract: A method is disclosed for the manufacture of colloidal rod particles as nanobarcodes. Template membranes for the deposition of materials are prepared using photolithographic techniques.Type: ApplicationFiled: October 2, 2001Publication date: August 8, 2002Inventors: Walter Stonas, Louis J. Dietz, Ian D. Walton, Michael J. Natan, James L. Winkler
-
Publication number: 20020071339Abstract: The invention provides exemplary devices, systems and methods for mixing of fluids, such as biological fluids. One exemplary device comprises is particularly adapted for holding at least one cartridge having a chamber containing a biological fluid, with the chamber having a generally planar face. The device comprises a rotatable body having a rotational axis. The rotatable body includes at least one mounting element which is adapted to mount the rotatable body such that the face of the chamber is generally perpendicular to the rotational axis.Type: ApplicationFiled: January 30, 2002Publication date: June 13, 2002Applicant: AFFYMETRIX, INC.Inventors: James L. Winkler, Mark Chee, David Lockhart
-
Patent number: 6399365Abstract: A package for hybridization includes a substrate and a housing. The substrate has a first surface that includes an array of probes having biological polymers immobilized thereon. The housing includes a fluid cavity constructed and arranged for hybridization of a target to a probe of the probe array located inside the fluid cavity. The housing also includes a bar code.Type: GrantFiled: July 17, 2001Date of Patent: June 4, 2002Assignee: Affymetrix, Inc.Inventors: Donald M. Besemer, Virginia W. Goss, James L. Winkler
-
Publication number: 20020058331Abstract: A body 300 having a cavity 310 for mounting a substrate 120 fabricated with probe sequences at known locations according to the methods disclosed in U.S. Pat. No. 5,143,854 and PCT WO 92/10092 or others, is provided. The cavity includes inlets 350 and 360 for introducing selected fluids into the cavity to contact the probes. Accordingly, a commercially feasible device for use in high throughput assay systems is provided.Type: ApplicationFiled: January 14, 2002Publication date: May 16, 2002Applicant: AFFYMETRIX, INC.,Inventors: Donald M. Besemer, Virginia W. Goss, James L. Winkler
-
Publication number: 20010041341Abstract: A body 300 having a cavity 310 for mounting a substrate 120 fabricated with probe sequences at known locations according to the methods disclosed in U.S. Pat. No. 5,143,854 and PCT WO 92/10092 or others, is provided. The cavity includes inlets 350 and 360 for introducing selected fluids into the cavity to contact the probes. Accordingly, a commercially feasible device for use in high throughput assay systems is provided.Type: ApplicationFiled: July 17, 2001Publication date: November 15, 2001Inventors: Donald M. Besemer, Virginia W. Goss, James L. Winkler
-
Patent number: 6287850Abstract: Agitation systems for reversibly directing fluid samples flow back and forth across a nucleic acid array, thereby promoting hybridization between targets in the fluid sample and probes on the nucleic acid array.Type: GrantFiled: April 29, 1999Date of Patent: September 11, 2001Assignee: Affymetrix, Inc.Inventors: Donald M. Besemer, Virginia W. Goss, James L. Winkler
-
Patent number: 6239273Abstract: A method and apparatus for selectively applying a print material onto a substrate for the synthesis of an array of oligonucleotides at selected regions of a substrate. The print material includes a barrier material, a monomer sequence, a nucleoside, a deprotection agent, a carrier material, among other materials. The method and apparatus also relies upon standard DMT based chemistry, and a vapor phase deprotection agent such as solid TCA and the like.Type: GrantFiled: October 26, 1999Date of Patent: May 29, 2001Assignee: Affymetrix, Inc.Inventors: R. Fabian Pease, Glenn McGall, Martin J. Goldberg, Richard P. Rava, Stephen P. A. Fodor, Virginia Goss, Lubert Stryer, James L. Winkler
-
Patent number: 6140044Abstract: A body 300 having a cavity 310 for mounting a substrate 120 fabricated with probe sequences at known locations according to the methods disclosed in U.S. Pat. No. 5,143,854 and PCT WO 92/10092 or others, is provided. The cavity includes inlets 350 and 360 for introducing selected fluids into the cavity to contact the probes. Accordingly, a commercially feasible device for use in high throughput assay systems is provided.Type: GrantFiled: September 14, 1995Date of Patent: October 31, 2000Assignee: Affymetrix, Inc.Inventors: Donald M. Besemer, Virginia W. Goss, James L. Winkler