Patents by Inventor John D. Coates

John D. Coates has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20230272404
    Abstract: Aerobic microbial processes comprise culturing microbes comprising a (per)chlorate respiration pathway in a bioreactor in a bioprocess employing microbial respiration of chloroxyanions as a source of oxygen for the bioprocess, in the absence of external addition of molecular oxygen.
    Type: Application
    Filed: May 7, 2023
    Publication date: August 31, 2023
    Applicant: The Regents of the University of California
    Inventor: John D. Coates
  • Publication number: 20220259544
    Abstract: Biomanufacturing hygiene control in batch and fed-batch bioreactors is provided using a bioreactor employing a chlorite/Cld system, wherein the bioreactor comprises an engineered cultured cell expressing a recombinant cytoplasmic chlorite dismutase (cCld) sufficient to increase chlorite resistance of the cell, and chlorite sufficient to substantially inhibit growth of one or more contaminating microorganisms in the bioreactor yet not substantially inhibit growth of the cell.
    Type: Application
    Filed: May 5, 2022
    Publication date: August 18, 2022
    Applicant: The Regents of the University of California
    Inventors: John D. Coates, Ouwei Wang, Victor M. Reyes-Umana
  • Publication number: 20210322462
    Abstract: Wound healing matrices, compounds, compositions, methods and systems comprising one or more chlorates, one or more chlorites, one or more antibiotics, one or more other antimicrobials, and/or one or more wound healing agents.
    Type: Application
    Filed: April 19, 2021
    Publication date: October 21, 2021
    Inventors: Dianne K. NEWMAN, Melanie A. SPERO, Manuela MARTINS-GREEN, John D. COATES
  • Patent number: 10724010
    Abstract: The present disclosure relates to recombinantly engineered cells that contain a chlorite dismutase polypeptide and methods for culturing such cells in a culture medium containing chlorite in an amount sufficient to reduce the growth rate or kill contaminating microorganisms without killing the recombinantly engineered cells. Also provided are methods for the production of a fermentation product using the recombinantly engineered cells.
    Type: Grant
    Filed: December 5, 2014
    Date of Patent: July 28, 2020
    Assignee: The Regents of the Uniiversity of California
    Inventor: John D. Coates
  • Patent number: 9994758
    Abstract: The present disclosure relates to methods of controlling the sulfide (S2?) content in systems, such as oil and gas reservoirs and pipelines, by the use of chlorine oxyanions and microorganisms with (per)chlorate-reducing activity.
    Type: Grant
    Filed: May 20, 2016
    Date of Patent: June 12, 2018
    Assignee: The Regents of the University of California
    Inventor: John D. Coates
  • Publication number: 20170283685
    Abstract: The present disclosure relates generally to methods of controlling souring in systems, and more specifically to methods of using chlorine oxyanions and inhibitors of (per)chlorate respiration to control souring in a system.
    Type: Application
    Filed: September 11, 2015
    Publication date: October 5, 2017
    Applicant: The Regents of the University of California
    Inventor: John D. COATES
  • Patent number: 9708526
    Abstract: Methods of reversibly altering the rock hydrology in systems, such as oil reservoirs, by inducing authigenic mineral-precipitating bacteria to produce authigenic rock mineral.
    Type: Grant
    Filed: October 24, 2012
    Date of Patent: July 18, 2017
    Assignee: THE REGENTS OF THE UNIVERSITY OF CALIFORNIA
    Inventor: John D. Coates
  • Publication number: 20170198196
    Abstract: The present disclosure relates generally to methods for controlling souring in engineered systems, and more specifically to methods of controlling souring using chemical, physical, and combinatorial treatments of engineered systems to reduce hydrogen sulfide-associated souring in such engineered systems, such as oil reservoirs.
    Type: Application
    Filed: June 5, 2015
    Publication date: July 13, 2017
    Applicants: The Regents of the University of California, BP Corporation North America Inc.
    Inventors: John D. COATES, Hans CARLSON, Anna ENGELBREKTSON, Mark MULLAN, Martin E. CARRERA
  • Publication number: 20170029788
    Abstract: The present disclosure relates to recombinantly engineered cells that contain a chlorite dismutase polypeptide and methods for culturing such cells in a culture medium containing chlorite in an amount sufficient to reduce the growth rate or kill contaminating microorganisms without killing the recombinantly engineered cells. Also provided are methods for the production of a fermentation product using the recombinantly engineered cells.
    Type: Application
    Filed: December 5, 2014
    Publication date: February 2, 2017
    Applicant: The Regents of the University of California
    Inventor: John D. COATES
  • Publication number: 20160369156
    Abstract: The present disclosure relates to methods of controlling the sulfide (S2?) content in systems, such as oil and gas reservoirs and pipelines, by the use of chlorine oxyanions and microorganisms with (per)chlorate-reducing activity.
    Type: Application
    Filed: May 20, 2016
    Publication date: December 22, 2016
    Applicant: The Regents of the University of California
    Inventor: John D. COATES
  • Patent number: 9365845
    Abstract: The present disclosure relates to methods of controlling the sulfide (S2˜) content in systems, such as oil and gas reservoirs and pipelines, by the use of chlorine oxyanions and microorganisms with (per)chlorate-reducing activity.
    Type: Grant
    Filed: May 31, 2012
    Date of Patent: June 14, 2016
    Assignee: The Regents of the University of California
    Inventor: John D. Coates
  • Publication number: 20160017206
    Abstract: The present disclosure relates to methods of controlling the sulfide (S2?) content in gases or fluids produced from sulfidogenic reservoir systems, such as oil reservoirs, by inducing authigenic mineral-precipitating bacteria to precipitate sulfide-scavenging authigenic rock material in the production well environment.
    Type: Application
    Filed: February 21, 2014
    Publication date: January 21, 2016
    Applicant: The Regents of the University of California
    Inventor: John D. COATES
  • Publication number: 20160017208
    Abstract: The present disclosure relates to methods of controlling wormhole formation in a borewell environment of reservoir systems, such as oil reservoirs, by inducing authigenic mineral-precipitating bacteria to precipitate authigenic rock minerals that consolidate unconsolidated rock matrices.
    Type: Application
    Filed: February 21, 2014
    Publication date: January 21, 2016
    Applicant: THE REGENTS OF THE UNIVERSITY OF CALIFORNIA
    Inventor: John D. COATES
  • Publication number: 20140251622
    Abstract: The present disclosure relates to methods of reversibly altering the rock hydrology in systems, such as oil reservoirs, by inducing authigenic mineral-precipitating bacteria to produce authigenic rock mineral.
    Type: Application
    Filed: October 24, 2012
    Publication date: September 11, 2014
    Applicant: THE REGENTS OF THE UNIVERSITY OF CALIFORNIA
    Inventor: John D. Coates
  • Publication number: 20140134736
    Abstract: The present disclosure relates to methods of controlling the sulfide (S2˜) content in systems, such as oil and gas reservoirs and pipelines, by the use of chlorine oxyanions and microorganisms with (per)chlorate-reducing activity.
    Type: Application
    Filed: May 31, 2012
    Publication date: May 15, 2014
    Applicant: The Regents of the University of California
    Inventor: John D. Coates
  • Patent number: 8685892
    Abstract: The present invention relates to methods, compositions and systems for detecting perchlorate in a sample. Compositions useful for detecting perchlorate in a sample include those comprising a perchlorate reductase, a reductant and an electron shuttle. In an exemplary embodiment, the composition comprises perchlorate reductase from Dechloromonas agitata, reduced nicotinamide adenine dinucleotide and N-methylphenazinium methylsulfate. The present invention also provides for methods of using the compositions disclosed herein, as well as systems thereof. In some exemplary embodiments, the methods comprise a concentration step, in which, for example, the sample is contacted with a cationic solid phase extraction column. Employing this step provides certain advantages such as a lowered detection limit and the removal of contaminants.
    Type: Grant
    Filed: September 1, 2009
    Date of Patent: April 1, 2014
    Assignee: The Regents of the University of California
    Inventors: John D. Coates, Mark L. Heinnickel
  • Publication number: 20110263440
    Abstract: The present invention relates to methods, compositions and systems for detecting perchlorate in a sample. Compositions useful for detecting perchlorate in a sample include those comprising a perchlorate reductase, a reductant and an electron shuttle. In an exemplary embodiment, the composition comprises perchlorate reductase from Dechloromonas agitata, reduced nicotinamide adenine dinucleotide and N-methylphenazinium methylsulfate. The present invention also provides for methods of using the compositions disclosed herein, as well as systems thereof. In some exemplary embodiments, the methods comprise a concentration step, in which, for example, the sample is contacted with a cationic solid phase extraction column. Employing this step provides certain advantages such as a lowered detection limit and the removal of contaminants.
    Type: Application
    Filed: September 1, 2009
    Publication date: October 27, 2011
    Applicant: The Regents of the University of California The Office of the President
    Inventors: John D. Coates, Mark L. Heinnickel
  • Publication number: 20100108522
    Abstract: The present invention provides a system for remediation of a xenobiotic in a liquid. The system comprises: a first chamber having a first port and a second port, a first electrode in the first chamber, a second electrode is in electrical communication with the first electrode and with a voltage source, wherein the first electrode is an anode and the second electrode is a cathode or the first electrode is a cathode and the second electrode is an anode. The system uses an electric current to provide an electron acceptor or electron donor for a microorganism capable of remediating the xenobiotic.
    Type: Application
    Filed: November 27, 2007
    Publication date: May 6, 2010
    Applicant: THE REGENTS OF THE UNIVERSITY OF CALIFORNIA
    Inventors: John D. Coates, Cameron J. Thrash
  • Publication number: 20100112676
    Abstract: This invention is directed generally to methods of controlling the odor of a biological material, and more particularly to methods comprising providing the biological material with an Fe(III)-reducing bacteria and a source of Fe(III). This invention also is directed generally to compositions and kits for controlling the odor of a biological material.
    Type: Application
    Filed: October 26, 2009
    Publication date: May 6, 2010
    Inventor: John D. Coates
  • Publication number: 20040137553
    Abstract: An enzymatic assay for chlorite, chlorate and perchlorate determination based on horseradish peroxidase, chlorate reductase, or nitrate reductase and a reacting dye was developed. The assay is quick and simple requiring less than 30 min; is cheap costing less than $0.05 per sample; uses standard laboratory equipment; is sensitive to a lower limit of 0.4 micromolar and linear up to 6.0 millimolar; is highly reproducible and interference free. The application of this assay to chlorite analysis in treated water will significantly reduce one of the major costs associated with the use of chlorine dioxide as a disinfectant and improve the drinking water quality.
    Type: Application
    Filed: June 9, 2003
    Publication date: July 15, 2004
    Applicant: Southern Illinois University
    Inventors: John D. Coates, Susan O'Connor