Patents by Inventor John P. Marino

John P. Marino has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20220315628
    Abstract: An amino acid-specific binder selectively binds to a binding amino acid. A binder complex selectively identifies the binding amino acid and includes an adjunct attached to the amino acid-specific binder. The adjunct includes a taggant, protein, substrate, or chemical modifier. Selectively identifying an N-terminal amino acid includes anchoring a C-terminal end; contacting an N-terminal amino acid of the anchored analyte with the binder complex; selectively binding when the N-terminal amino acid includes the binding amino acid; producing, by the taggant of the tagged complex, a taggant signal; detecting the taggant signal; and identifying the N-terminal amino acid based on the taggant signal.
    Type: Application
    Filed: June 10, 2022
    Publication date: October 6, 2022
    Inventors: Jennifer A. Tullman, Zvi Kelman, John P. Marino
  • Patent number: 11390653
    Abstract: An amino acid-specific binder selectively binds to a binding amino acid. A binder complex selectively identifies the binding amino acid and includes an adjunct attached to the amino acid-specific binder. The adjunct includes a taggant, protein, substrate, or chemical modifier. Selectively identifying an N-terminal amino acid includes anchoring a C-terminal end; contacting an N-terminal amino acid of the anchored analyte with the binder complex; selectively binding when the N-terminal amino acid includes the binding amino acid; producing, by the taggant of the tagged complex, a taggant signal; detecting the taggant signal; and identifying the N-terminal amino acid based on the taggant signal.
    Type: Grant
    Filed: August 6, 2020
    Date of Patent: July 19, 2022
    Assignee: GOVERNMENT OF THE UNITED STATES OF AMERICA, AS REPRESENTED BY THE SECRETARY OF COMMERCE
    Inventors: Jennifer A. Tullman, Zvi Kelman, John P. Marino
  • Publication number: 20200385432
    Abstract: An amino acid-specific binder selectively binds to a binding amino acid. A binder complex selectively identifies the binding amino acid and includes an adjunct attached to the amino acid-specific binder. The adjunct includes a taggant, protein, substrate, or chemical modifier. Selectively identifying an N-terminal amino acid includes anchoring a C-terminal end; contacting an N-terminal amino acid of the anchored analyte with the binder complex; selectively binding when the N-terminal amino acid includes the binding amino acid; producing, by the taggant of the tagged complex, a taggant signal; detecting the taggant signal; and identifying the N-terminal amino acid based on the taggant signal.
    Type: Application
    Filed: August 6, 2020
    Publication date: December 10, 2020
    Inventors: Jennifer A. Tullman, Zvi Kelman, John P. Marino
  • Patent number: 10836798
    Abstract: An amino acid-specific binder selectively binds to a binding amino acid. A binder complex selectively identifies the binding amino acid and includes an adjunct attached to the amino acid-specific binder. The adjunct includes a taggant, protein, substrate, or chemical modifier. Selectively identifying an N-terminal amino acid includes anchoring a C-terminal end; contacting an N-terminal amino acid of the anchored analyte with the binder complex; selectively binding when the N-terminal amino acid includes the binding amino acid; producing, by the taggant of the tagged complex, a taggant signal; detecting the taggant signal; and identifying the N-terminal amino acid based on the taggant signal.
    Type: Grant
    Filed: April 26, 2019
    Date of Patent: November 17, 2020
    Assignee: GOVERNMENT OF THE UNITED STATES OF AMERICA, AS REPRESENTED BY THE SECRETARY OF COMMERCE
    Inventors: Jennifer A. Tullman, Zvi Kelman, John P. Marino
  • Publication number: 20200148727
    Abstract: An amino acid-specific binder selectively binds to a binding amino acid. A binder complex selectively identifies the binding amino acid and includes an adjunct attached to the amino acid-specific binder. The adjunct includes a taggant, protein, substrate, or chemical modifier. Selectively identifying an N-terminal amino acid includes anchoring a C-terminal end; contacting an N-terminal amino acid of the anchored analyte with the binder complex; selectively binding when the N-terminal amino acid includes the binding amino acid; producing, by the taggant of the tagged complex, a taggant signal; detecting the taggant signal; and identifying the N-terminal amino acid based on the taggant signal.
    Type: Application
    Filed: April 26, 2019
    Publication date: May 14, 2020
    Inventors: Jennifer A. Tullman, Zvi Kelman, John P. Marino
  • Patent number: 9534243
    Abstract: A process for making a nucleotide analog includes combining a first substrate that includes a linker and a base with a second substrate to form a substrate composition. An enzyme contacts the substrate composition and catalyzes formation of the nucleotide analog from the first substrate and the second substrate. Additionally, a composition includes the first substrate, second substrate, the enzyme, the nucleotide analog, and optional additives.
    Type: Grant
    Filed: February 7, 2014
    Date of Patent: January 3, 2017
    Assignees: THE UNITED STATES OF AMERICA, AS REPRESENTED BY THE SECRETARY OF COMMERCE, MEMORIAL SLOAN KETTERING CANCER CENTER, UNIVERSITY OF MARYLAND
    Inventors: John P. Marino, Zvi Kelman, Jerard Hurwitz, Gary G. Giulian
  • Publication number: 20140170711
    Abstract: A process for making a nucleotide analog includes combining a first substrate that includes a linker and a base with a second substrate to form a substrate composition. An enzyme contacts the substrate composition and catalyzes formation of the nucleotide analog from the first substrate and the second substrate. Additionally, a composition includes the first substrate, second substrate, the enzyme, the nucleotide analog, and optional additives.
    Type: Application
    Filed: February 7, 2014
    Publication date: June 19, 2014
    Applicant: NATIONAL INSTITUTE OF STANDARDS AND TECHNOLOGY
    Inventors: JOHN P. MARINO, ZVI KELMAN, JERARD HURWITZ, GARY G. GIULIAN
  • Patent number: 6986125
    Abstract: A functional testing and evaluation technique is provided employing an abstraction matrix that describes a complex software component to be tested. The abstraction matrix includes at least one test case scenario and mapped expected results therefore. Test cases are derived from the at least one test case scenario and used to test the software component, thereby generating test results. The test results are automatically evaluated using the abstraction matrix. The evaluating includes comparing a test case to the at least one test case scenario of the abstraction matrix and if a match is found, comparing the test result for that test case with the mapped expected result therefore in the abstraction matrix.
    Type: Grant
    Filed: October 23, 2001
    Date of Patent: January 10, 2006
    Assignee: International Business Machines Corporation
    Inventors: Joseph T. Apuzzo, John P. Marino, Curtis L. Hoskins, Timothy L. Race, Hemant R. Suri
  • Patent number: 6941546
    Abstract: A functional testing technique is provided employing an abstraction matrix that describes a complex software component to be tested. The abstraction matrix includes state and event information. The technique is an automated process which parses the abstraction matrix to generate test cases and mapped expected results therefore. The test cases are separated based on layers of the software component and data structures are associated with the separated test cases of the layers. The data structures allow the test cases of the various layers to be uncorrelated. The software component executable is employed to generate test case execution threads from the test cases and mapped expected results for a particular layer. These execution threads can then be executed in parallel, thereby testing the software component.
    Type: Grant
    Filed: August 1, 2001
    Date of Patent: September 6, 2005
    Assignee: International Business Machines Corporation
    Inventors: Joseph T. Apuzzo, John P. Marino, Curtis L. Hoskins, Timothy L. Race, Hemant R. Suri
  • Patent number: 6743586
    Abstract: The present invention is a method of identifying ligands that interact will cellular processes involved in the life-cycle of HIV. In particular, an oligonucleotide, corresponding to specific RNA sequence within an infected cell, is modified by the substitution of 2-aminopurine. As a result, interactions between the oligonucleotide and the ligand can be measured via fluorescence. This technique can be use to find inhibitors of binding between rev and its response element (RRE), dimerization initiation sequences, and topoisomerases and DNA.
    Type: Grant
    Filed: October 25, 2001
    Date of Patent: June 1, 2004
    Assignee: The United States of America as represented by the Secretary of the Commerce
    Inventors: John P. Marino, James T. Stivers, Karen Lacourciere
  • Publication number: 20030165846
    Abstract: The present invention is a method of identifying ligands that interact will cellular processes involved in the life-cycle of HIV. In particular, an oligonucleotide, corresponding to specific RNA sequence within an infected cell, is modified by the substitution of 2-aminopurine. As a result, interactions between the oligonucleotide and the ligand can be measured via fluorescence. This technique can be use to find inhibitors of binding between rev and its response element (RRE), dimerization initiation sequences, and topoisomerases and DNA.
    Type: Application
    Filed: October 25, 2001
    Publication date: September 4, 2003
    Inventors: John P. Marino, James T. Stivers, Karen Lacourciere
  • Publication number: 20030037314
    Abstract: A functional testing and evaluation technique is provided employing an abstraction matrix that describes a complex software component to be tested. The abstraction matrix includes at least one test case scenario and mapped expected results therefore. Test cases are derived from the at least one test case scenario and used to test the software component, thereby generating test results. The test results are automatically evaluated using the abstraction matrix. The evaluating includes comparing a test case to the at least one test case scenario of the abstraction matrix and if a match is found, comparing the test result for that test case with the mapped expected result therefore in the abstraction matrix.
    Type: Application
    Filed: October 23, 2001
    Publication date: February 20, 2003
    Applicant: International Business Machines Corporation
    Inventors: Joseph T. Apuzzo, John P. Marino, Curtis L. Hoskins, Timothy L. Race, Hemant R. Suri
  • Publication number: 20030028856
    Abstract: A functional testing technique is provided employing an abstraction matrix that describes a complex software component to be tested. The abstraction matrix includes state and event information. The technique is an automated process which parses the abstraction matrix to generate test cases and mapped expected results therefore. The test cases are separated based on layers of the software component and data structures are associated with the separated test cases of the layers. The data structures allow the test cases of the various layers to be uncorrelated. The software component executable is employed to generate test case execution threads from the test cases and mapped expected results for a particular layer. These execution threads can then be executed in parallel, thereby testing the software component.
    Type: Application
    Filed: August 1, 2001
    Publication date: February 6, 2003
    Inventors: Joseph T. Apuzzo, John P. Marino, Curtis L. Hoskins, Timothy L. Race, Hemant R. Suri