Patents by Inventor John R. Stuelpnagel

John R. Stuelpnagel has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • ARRAY SYSTEMS AND COMPONENTS
    Publication number: 20090227472
    Abstract: The invention relates to sensor compositions comprising a composite array of individual arrays, to allow for simultaneous processing of a number of samples. The invention further provides methods of making and using the composite arrays. The invention further provides a hybridization chamber for use with a composite array.
    Type: Application
    Filed: March 16, 2009
    Publication date: September 10, 2009
    Inventors: John R. Stuelpnagel, Mark S. Chee, Steven R. Auger, Gan G. Wang, Laura S. Casas, Shawn Christopher Baker, Robert C. Kain
  • METHODS OF MAKING ARRAYS
    Publication number: 20090221450
    Abstract: The invention relates to sensor compositions comprising a composite array of individual arrays, to allow for simultaneous processing of a number of samples. The invention further provides methods of making and using the composite arrays. The invention further provides a hybridization chamber for use with a composite array.
    Type: Application
    Filed: March 16, 2009
    Publication date: September 3, 2009
    Inventors: John R Stuelpnagel, Mark S. Chee, Steven R. Auger, Gan G. Wang, Laura S. Casas, Shawn Christopher Baker, Robert C. Kain
  • Multiplex nucleic acid reactions
    Patent number: 7582420
    Abstract: The invention is directed to a variety of multiplexing methods used to amplify and/or genotype a variety of samples simultaneously.
    Type: Grant
    Filed: July 12, 2002
    Date of Patent: September 1, 2009
    Assignee: Illumina, Inc.
    Inventors: Arnold Oliphant, John R. Stuelpnagel, Mark S. Chee, Scott L. Butler, Jian-Bing Fan, Min-Jui Richard Shen
  • ARRAY KITS AND PROCESSING SYSTEMS
    Publication number: 20090215649
    Abstract: The invention relates to sensor compositions comprising a composite array of individual arrays, to allow for simultaneous processing of a number of samples. The invention further provides methods of making and using the composite arrays. The invention further provides a hybridization chamber for use with a composite array.
    Type: Application
    Filed: March 16, 2009
    Publication date: August 27, 2009
    Inventors: John R. Stuelpnagel, Mark S. Chee, Steven R. Auger, Gan G. Wang, Laura S. Casas, Shawn Christopher Baker, Robert C. Kain
  • DETECTION OF NUCLEIC ACID REACTIONS ON BEAD ARRAYS
    Publication number: 20090186349
    Abstract: The present invention is directed to methods and compositions for the use of microsphere arrays to detect and quantify a number of nucleic acid reactions. The invention finds use in genotyping, i.e. the determination of the sequence of nucleic acids, particularly alterations such as nucleotide substitutions (mismatches) and single nucleotide polymorphisms (SNPs). Similarly, the invention finds use in the detection and quantification of a nucleic acid target using a variety of amplification techniques, including both signal amplification and target amplification. The methods and compositions of the invention can be used in nucleic acid sequencing reactions as well. All applications can include the use of adapter sequences to allow for universal arrays.
    Type: Application
    Filed: September 17, 2008
    Publication date: July 23, 2009
    Applicant: Illumina, Inc.
    Inventors: Kevin Gunderson, John R. Stuelpnagel, Mark S. Chee
  • Multiplex decoding of array sensors with microspheres
    Patent number: 7455971
    Abstract: The invention relates to compositions and methods for multiplex decoding of microsphere array sensors.
    Type: Grant
    Filed: November 22, 2005
    Date of Patent: November 25, 2008
    Assignee: Illumina, Inc.
    Inventors: Mark S. Chee, John R. Stuelpnagel, Anthony W. Czarnik
  • MULTIPLEX NUCLEIC ACID REACTIONS
    Publication number: 20080242555
    Abstract: The invention is directed to a variety of multiplexing methods used to amplify and/or genotype a variety of samples simultaneously.
    Type: Application
    Filed: February 15, 2008
    Publication date: October 2, 2008
    Applicant: Illumina, Inc.
    Inventors: Min-Jui Richard Shen, Arnold Oliphant, Scott L. Butler, John R. Stuelpnagel, Mark S. Chee, Kenneth M. Kuhn, Jian-Bing Fan
  • Multiplex decoding of array sensors with microspheres
    Patent number: 7226734
    Abstract: The invention relates to compositions and methods for multiplex decoding of microsphere array sensors.
    Type: Grant
    Filed: June 28, 2002
    Date of Patent: June 5, 2007
    Assignee: Illumina, Inc.
    Inventors: Mark S. Chee, John R. Stuelpnagel, Anthony W. Czarnik
  • Method of making and decoding of array sensors with microspheres
    Patent number: 7060431
    Abstract: The invention relates to compositions and methods for decoding microsphere array sensors.
    Type: Grant
    Filed: June 24, 1999
    Date of Patent: June 13, 2006
    Assignee: Illumina, Inc.
    Inventors: Mark S. Chee, John R. Stuelpnagel, Anthony W. Czarnik
  • Decoding of array sensors with microspheres
    Patent number: 7033754
    Abstract: The invention relates to compositions and methods for decoding microsphere array sensors.
    Type: Grant
    Filed: December 22, 2000
    Date of Patent: April 25, 2006
    Assignee: Illumina, Inc.
    Inventors: Mark S. Chee, Anthony W. Czarnik, John R. Stuelpnagel
  • Composite arrays utilizing microspheres
    Patent number: 6998274
    Abstract: The invention relates to compositions and methods for decoding microsphere array sensors.
    Type: Grant
    Filed: July 12, 2002
    Date of Patent: February 14, 2006
    Assignee: Illumina, Inc.
    Inventors: Mark S. Chee, Steven R. Auger, John R. Stuelpnagel
  • Compositions and methods for repetitive use of genomic DNA
    Patent number: 6913884
    Abstract: The present invention relates to detection or genotyping (or other sample analysis) of target nucleic acids following immobilization of the target nucleic acids onto a surface. The target nucleic acids can be re-used multiple times, thus conserving sample materials and simplifying sample preparation.
    Type: Grant
    Filed: August 16, 2001
    Date of Patent: July 5, 2005
    Assignee: Illumina, Inc.
    Inventors: John R. Stuelpnagel, Mark S. Chee
  • Multiplexed detection of analytes
    Patent number: 6890741
    Abstract: The present invention is directed to sensitive and accurate multiplexed assays for target analyte detection.
    Type: Grant
    Filed: July 24, 2001
    Date of Patent: May 10, 2005
    Assignee: Illumina, Inc.
    Inventors: Jian-Bing Fan, John R. Stuelpnagel, Mark S. Chee
  • Composite arrays utilizing microspheres
    Patent number: 6858394
    Abstract: The invention relates to sensor compositions comprising a composite array of individual arrays, to allow for simultaneous processing of a number of samples. The invention further provides methods of making and using the composite arrays.
    Type: Grant
    Filed: December 28, 1999
    Date of Patent: February 22, 2005
    Assignee: Illumina, Inc.
    Inventors: Mark S. Chee, Steven R. Auger, John R. Stuelpnagel
  • Composite arrays utilizing microspheres with a hybridization chamber
    Publication number: 20040185482
    Abstract: The invention relates to sensor compositions comprising a composite array of individual arrays, to allow for simultaneous processing of a number of samples. The invention further provides methods of making and using the composite arrays. The invention further provides a hybridization chamber for use with a composite array.
    Type: Application
    Filed: January 28, 2004
    Publication date: September 23, 2004
    Applicant: Illumina, Inc.
    Inventors: John R. Stuelpnagel, Mark S. Chee, Steven R. Auger, Gan G. Wang, Laura S. Casas, Shawn Christopher Baker, Robert C. Kain
  • Composite arrays utilizing microspheres with a hybridization chamber
    Publication number: 20040185483
    Abstract: The invention relates to sensor compositions comprising a composite array of individual arrays, to allow for simultaneous processing of a number of samples. The invention further provides methods of making and using the composite arrays. The invention further provides a hybridization chamber for use with a composite array.
    Type: Application
    Filed: January 28, 2004
    Publication date: September 23, 2004
    Applicant: Illumina, Inc.
    Inventors: John R. Stuelpnagel, Mark S. Chee, Steven R. Auger
  • Detection of nucleic acid reactions on bead arrays
    Publication number: 20040018491
    Abstract: The present invention is directed to methods and compositions for the use of microsphere arrays to detect and quantify a number of nucleic acid reactions. The invention finds use in genotyping, i.e. the determination of the sequence of nucleic acids, particularly alterations such as nucleotide substitutions (mismatches) and single nucleotide polymorphisms (SNPs). Similarly, the invention finds use in the detection and quantification of a nucleic acid target using a variety of amplification techniques, including both signal amplification and target amplification. The methods and compositions of the invention can be used in nucleic acid sequencing reactions as well. All applications can include the use of adapter sequences to allow for universal arrays.
    Type: Application
    Filed: October 26, 2001
    Publication date: January 29, 2004
    Inventors: Kevin Gunderson, John R. Stuelpnagel, Mark S. Chee
  • Detection of nucleic acid reactions on bead arrays
    Publication number: 20030215821
    Abstract: The present invention is directed to methods and compositions for the use of microsphere arrays to detect and quantify a number of nucleic acid reactions. The invention finds use in genotyping, i.e. the determination of the sequence of nucleic acids, particularly alterations such as nucleotide substitutions (mismatches) and single nucleotide polymorphisms (SNPs). Similarly, the invention finds use in the detection and quantification of a nucleic acid target using a variety of amplification techniques, including both signal amplification and target amplification. The methods and compositions of the invention can be used in nucleic acid sequencing reactions as well. All applications can include the use of adapter sequences to allow for universal arrays.
    Type: Application
    Filed: October 4, 2002
    Publication date: November 20, 2003
    Inventors: Kevin Gunderson, John R. Stuelpnagel, Mark S. Chee
  • Multiplex nucleic acid reactions
    Publication number: 20030211489
    Abstract: The invention is directed to a variety of multiplexing methods used to amplify and/or genotype a variety of samples simultaneously.
    Type: Application
    Filed: June 20, 2002
    Publication date: November 13, 2003
    Inventors: Min-Jui Richard Shen, Arnold Oliphant, Scott L. Butler, John R. Stuelpnagel, Mark S. Chee, Kenneth M. Kuhn, Jian-Bing Fan
  • Detection of nucleic acid reactions on bead arrays
    Publication number: 20030207295
    Abstract: The present invention is directed to methods and compositions for the use of microsphere arrays to detect and quantify a number of nucleic acid reactions. The invention finds use in genotyping, i.e. the determination of the sequence of nucleic acids, particularly alterations such as nucleotide substitutions (mismatches) and single nucleotide polymorphisms (SNPs). Similarly, the invention finds use in the detection and quantification of a nucleic acid target using a variety of amplification techniques, including both signal amplification and target amplification. The methods and compositions of the invention can be used in nucleic acid sequencing reactions as well. All applications can include the use of adapter sequences to allow for universal arrays.
    Type: Application
    Filed: October 4, 2002
    Publication date: November 6, 2003
    Inventors: Kevin Gunderson, John R. Stuelpnagel, Mark S. Chee