Patents by Inventor Jonathan J. Burbaum

Jonathan J. Burbaum has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20110262986
    Abstract: Provided herein are devices, arrays, methods, systems, and other subject matter comprising a biological solar panel device comprising: (a) a layer comprising a material is transparent or translucent to light; (b) a photosynthetic layer comprising a material that uses carbon dioxide and water in the presence of sunlight to release a volatile organic molecule, wherein the photosynthetic layer is separated from the transparent or translucent material by a gas layer; and (c) a layer that provides support for the material that releases a volatile organic molecule.
    Type: Application
    Filed: January 7, 2011
    Publication date: October 27, 2011
    Inventor: Jonathan J. Burbaum
  • Patent number: 6806056
    Abstract: A method for determining the level of tyrosine kinase activity in a biological sample is disclosed. The method employs an anti-phosphotyrosine antibody as both the capture agent and the detecting agent. The detecting antibody is labeled with a fluorescent label, for instance, Cy5, Cy5.5 or Cy7 or a lanthanide ion, such as europium, as the signal generating entity. The method is particularly well suited to high throughput screening, for example, for compounds which modulate tyrosine kinase activity.
    Type: Grant
    Filed: April 18, 2002
    Date of Patent: October 19, 2004
    Assignee: Pharmacopeia Drug Discovery, Inc.
    Inventors: J. Fraser Glickman, James Inglese, Bassam Damaj, Maria L. Webb, Jonathan J. Burbaum
  • Patent number: 6627447
    Abstract: Techniques for high throughput parallel separation, filtration and plate-to-plate transfer are described. Cells, proteins, chemical compounds and the like are being developed in multi-well, small volume well plates, such as 1536-well plates having wells of a volume on the order of 1 &mgr;l. A mechanism for clamping such plates together so that the wells will be aligned allows rapid separation or transfer by simply centrifuging the assembly. A membrane may be clamped between the plates. Alternatively, a membrane may replace one of the plates. Centrifuge dependent and independent designs are described.
    Type: Grant
    Filed: July 6, 2001
    Date of Patent: September 30, 2003
    Assignee: Pharmacopeia Drug Discovery, Inc.
    Inventors: Jonathan J. Burbaum, Stephen Skwish, Timothy Pryor
  • Publication number: 20020177179
    Abstract: A method for determining the level of tyrosine kinase activity in a biological sample is disclosed. The method employs an anti-phosphotyrosine antibody as both the capture agent and the detecting agent. The detecting antibody is labeled with a fluorescent label, for instance, Cy5, Cy5.5 or Cy7 or a lanthanide ion, such as europium, as the signal generating entity. The method is particularly well suited to high throughput screening, for example, for compounds which modulate tyrosine kinase activity.
    Type: Application
    Filed: April 18, 2002
    Publication date: November 28, 2002
    Applicant: Pharmacopiea, Inc.
    Inventors: J. Fraser Glickman, James Inglese, Bassam Damaj, Maria L. Webb, Jonathan J. Burbaum
  • Publication number: 20010038809
    Abstract: Techniques for high throughput parallel separation, filtration and plate-to-plate transfer are described. Cells, proteins, chemical compounds and the like are being developed in multi-well, small volume well plates, such as 1536-well plates having wells of a volume on the order of 1 &mgr;l. A mechanism for clamping such plates together so that the wells will be aligned allows rapid separation or transfer by simply centrifuging the assembly. A membrane may be clamped between the plates. Alternatively, a membrane may replace one of the plates. Centrifuge dependent and independent designs are described.
    Type: Application
    Filed: July 6, 2001
    Publication date: November 8, 2001
    Inventors: Jonathan J. Burbaum, Stephen Skwish, Timothy Pryor
  • Patent number: 6274088
    Abstract: Techniques for high throughput parallel separation, filtration and plate-to-plate transfer are described. Cells, proteins, chemical compounds and the like are being developed in multi-well, small volume well plates, such as 1536-well plates having wells of a volume on the order of 1 &mgr;l. A mechanism for clamping such plates together so that the wells will be aligned allows rapid separation or transfer by simply centrifuging the assembly. A membrane may be clamped between the plates. Alternatively, a membrane may replace one of the plates. Centrifuge dependent and independent designs are described.
    Type: Grant
    Filed: April 6, 1998
    Date of Patent: August 14, 2001
    Assignee: Pharmacopeia, Inc.
    Inventors: Jonathan J. Burbaum, Stephen Skwish, Timothy Pryor
  • Patent number: 6156520
    Abstract: The present invention encompasses polypeptides that comprise a chemokine receptor binding sequence and are useful in determining the affinity of a compound for a chemokine receptor. Substitution of one of the amino acids of the C-terminal region of the polypeptide with a cysteine enables the polypeptide to be detectably labelled without loss of receptor binding activity and without the problems inherent in radioiodine labelling. Methods for use of the polypeptides in competitive binding assays are also disclosed.
    Type: Grant
    Filed: August 15, 1997
    Date of Patent: December 5, 2000
    Assignee: Pharmacopeia, Inc.
    Inventors: James Inglese, Kenneth C. Appell, Philippe Samama, Ilana L. Stroke, Jonathan J. Burbaum
  • Patent number: 5981207
    Abstract: Caged enzyme substrates as probes for detecting reporter enzyme activity in cell-based assays are disclosed. Caged substrates for reporter gene assays are shown as compounds of Formula I or Formula II: ##STR1## wherein Z is a luminescent functionality; G is a labile group, cleavable by enzymatic action; and K is a photolytically cleavable caging group; wherein m and n are independently 0 or 1, but m and n both can not be zero. Test kits for determining reporter enzyme activity using compounds of Formula I or Formula II and photolytic cleavage to produce a compound of Formula III:G.sub.m --Z--G.sub.n IIIare described. Methods for determining reporter enzyme activity and, by inference, the activator or suppressor activity of a test compound in a cell-based assay are also described.
    Type: Grant
    Filed: December 18, 1998
    Date of Patent: November 9, 1999
    Assignee: Pharmacopeia, Inc.
    Inventors: Jonathan J. Burbaum, Ke Yang
  • Patent number: 5908776
    Abstract: Cell culture chambers and incubators are operated to grow cells under a wide variety of conditions. Where those conditions result in too rapid evaporation of the well media for low volume wells such as those found in 1536-well plates, a subchamber is provided to increase the local humidity so that media evaporation is controlled to an acceptable level. A local liquid source is provided. That liquid may be water or an isotonic solution matched to the well media for a particular application.
    Type: Grant
    Filed: April 6, 1998
    Date of Patent: June 1, 1999
    Assignee: Pharmacopeia, Inc.
    Inventors: Jonathan J. Burbaum, Stephen Skwish
  • Patent number: 5876946
    Abstract: A homogeneous high throughput assay is described which screens compounds for enzyme inhibition, or receptor or other target binding. Inhibition (or binding) by the library compounds causes a change in the amount of an optically detectable label that is bound to suspendable cells or solid supports. The amounts of label bound to individual cells or solid supports are microscopically determined, and compared with the amount of label that is not bound to individual cells or solid supports. The degree of inhibition or binding is determined using this data. Confocal microscopy, and subsequent data analysis, allow the assay to be carried out without any separation step, and provide for high throughput screening of very small assay volumes using very small amounts of test compound.
    Type: Grant
    Filed: June 3, 1997
    Date of Patent: March 2, 1999
    Assignee: Pharmacopeia, Inc.
    Inventors: Jonathan J. Burbaum, Thomas D.Y. Chung, Gregory L. Kirk, James Inglese, Daniel Chelsky
  • Patent number: 5856083
    Abstract: A lawn assay is described for determining compounds that affect enzyme activity or that bind to target molecules. Compounds to be screened are cleaved, and diffused from solid supports into a colloidal matrix. Enzymatic catalysis or binding to target molecules by the compounds is carried out in the matrix. Active compounds are found by monitoring a photometrically detectable change in a substrate, coenzyme, or cofactor involved in the enzymatic reaction, or in a labeled ligand bound to the target molecule, that produces a zone of activity associated with the compounds.
    Type: Grant
    Filed: November 3, 1995
    Date of Patent: January 5, 1999
    Assignee: Pharmacopeia, Inc.
    Inventors: Daniel Chelsky, Jonathan J. Burbaum
  • Patent number: 5688997
    Abstract: Combinatorial libraries are disclosed which are represented by Formula I:(T'-L).sub.q -S-C(O)-L'-II' Iwherein:S is a solid support; T'-L- is an identifier residue; and -L'-II' is a ligand/linker residue. These libraries contain dihydrobenzopyrans of the formula: ##STR1## which interact (i.e., as agonists or antagonists) with .alpha. adrenergic receptors, dopamine receptors, .sigma.-opiate receptors, and K.sup.+ channels and are inhibitors of carbonic anhydrase isozymes. They are useful in the treatment of ocular diseases such as glaucoma.
    Type: Grant
    Filed: June 7, 1995
    Date of Patent: November 18, 1997
    Assignee: Pharmacopeia, Inc.
    Inventors: John J. Baldwin, John C. Reader, Lawrence W. Dillard, Ge Li, Jonathan J. Burbaum, Wenguang Zeng
  • Patent number: 5324731
    Abstract: A method of inhibiting growth, transformation and/or metastasis of mammalian cells, particularly epithelial cells, in which activity of at least one enzyme, which participates in purine metabolism or regulation of nucleotide levels or the relative ratios of their phosphorylated states, is elevated. In particular, a method of inhibiting transformation, growth and/or metastasis of mammalian cells in which a DNA tumor virus, a DNA tumor virus factor or other factor which has an equivalent effect on cells has acted.
    Type: Grant
    Filed: November 7, 1990
    Date of Patent: June 28, 1994
    Assignee: Amira, Inc.
    Inventors: Rima Kaddurah-Daouk, James W. Lillie, Jonathan J. Burbaum
  • Patent number: 5321030
    Abstract: The present invention relates to the use of analogs of creatine, such as cyclocreatine, as antiviral agents. Analogs of creatine can be used as antiviral agents against a variety of viruses, particularly DNA viruses, such as Herpes viruses (e.g., HSV-1, HSV-2, cytomegaloviruses, Varicella-Zoster virus) and adenovirus. The invention further relates to creatine analogs including four classes of creatine analogs selected as candidate antiviral compounds: (1) creatine analogs that can be phosphorylated by creatine kinase but differ in their phosphoryl group transfer potential, (2) bisubstrate inhibitors of creatine kinase comprising covalently linked structural analogs of adenosine triphosphate (ATP) and creatine, (3) creatine analogs which can act as irreversible inhibitors of creatine kinase, and (4) N-phosphorocreatine analogs bearing non-transferable moieties which mimic the N-phosphoryl group.
    Type: Grant
    Filed: December 20, 1991
    Date of Patent: June 14, 1994
    Assignee: Amira, Inc.
    Inventors: Rima Kaddurah-Daouk, James W. Lillie, Theodore S. Widlanski, Jonathan J. Burbaum, Craig J. Forsyth