Patents by Inventor Jonathan J. Burbaum
Jonathan J. Burbaum has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).
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Publication number: 20110262986Abstract: Provided herein are devices, arrays, methods, systems, and other subject matter comprising a biological solar panel device comprising: (a) a layer comprising a material is transparent or translucent to light; (b) a photosynthetic layer comprising a material that uses carbon dioxide and water in the presence of sunlight to release a volatile organic molecule, wherein the photosynthetic layer is separated from the transparent or translucent material by a gas layer; and (c) a layer that provides support for the material that releases a volatile organic molecule.Type: ApplicationFiled: January 7, 2011Publication date: October 27, 2011Inventor: Jonathan J. Burbaum
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Patent number: 6806056Abstract: A method for determining the level of tyrosine kinase activity in a biological sample is disclosed. The method employs an anti-phosphotyrosine antibody as both the capture agent and the detecting agent. The detecting antibody is labeled with a fluorescent label, for instance, Cy5, Cy5.5 or Cy7 or a lanthanide ion, such as europium, as the signal generating entity. The method is particularly well suited to high throughput screening, for example, for compounds which modulate tyrosine kinase activity.Type: GrantFiled: April 18, 2002Date of Patent: October 19, 2004Assignee: Pharmacopeia Drug Discovery, Inc.Inventors: J. Fraser Glickman, James Inglese, Bassam Damaj, Maria L. Webb, Jonathan J. Burbaum
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Patent number: 6627447Abstract: Techniques for high throughput parallel separation, filtration and plate-to-plate transfer are described. Cells, proteins, chemical compounds and the like are being developed in multi-well, small volume well plates, such as 1536-well plates having wells of a volume on the order of 1 &mgr;l. A mechanism for clamping such plates together so that the wells will be aligned allows rapid separation or transfer by simply centrifuging the assembly. A membrane may be clamped between the plates. Alternatively, a membrane may replace one of the plates. Centrifuge dependent and independent designs are described.Type: GrantFiled: July 6, 2001Date of Patent: September 30, 2003Assignee: Pharmacopeia Drug Discovery, Inc.Inventors: Jonathan J. Burbaum, Stephen Skwish, Timothy Pryor
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Publication number: 20020177179Abstract: A method for determining the level of tyrosine kinase activity in a biological sample is disclosed. The method employs an anti-phosphotyrosine antibody as both the capture agent and the detecting agent. The detecting antibody is labeled with a fluorescent label, for instance, Cy5, Cy5.5 or Cy7 or a lanthanide ion, such as europium, as the signal generating entity. The method is particularly well suited to high throughput screening, for example, for compounds which modulate tyrosine kinase activity.Type: ApplicationFiled: April 18, 2002Publication date: November 28, 2002Applicant: Pharmacopiea, Inc.Inventors: J. Fraser Glickman, James Inglese, Bassam Damaj, Maria L. Webb, Jonathan J. Burbaum
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Publication number: 20010038809Abstract: Techniques for high throughput parallel separation, filtration and plate-to-plate transfer are described. Cells, proteins, chemical compounds and the like are being developed in multi-well, small volume well plates, such as 1536-well plates having wells of a volume on the order of 1 &mgr;l. A mechanism for clamping such plates together so that the wells will be aligned allows rapid separation or transfer by simply centrifuging the assembly. A membrane may be clamped between the plates. Alternatively, a membrane may replace one of the plates. Centrifuge dependent and independent designs are described.Type: ApplicationFiled: July 6, 2001Publication date: November 8, 2001Inventors: Jonathan J. Burbaum, Stephen Skwish, Timothy Pryor
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Patent number: 6274088Abstract: Techniques for high throughput parallel separation, filtration and plate-to-plate transfer are described. Cells, proteins, chemical compounds and the like are being developed in multi-well, small volume well plates, such as 1536-well plates having wells of a volume on the order of 1 &mgr;l. A mechanism for clamping such plates together so that the wells will be aligned allows rapid separation or transfer by simply centrifuging the assembly. A membrane may be clamped between the plates. Alternatively, a membrane may replace one of the plates. Centrifuge dependent and independent designs are described.Type: GrantFiled: April 6, 1998Date of Patent: August 14, 2001Assignee: Pharmacopeia, Inc.Inventors: Jonathan J. Burbaum, Stephen Skwish, Timothy Pryor
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Patent number: 6156520Abstract: The present invention encompasses polypeptides that comprise a chemokine receptor binding sequence and are useful in determining the affinity of a compound for a chemokine receptor. Substitution of one of the amino acids of the C-terminal region of the polypeptide with a cysteine enables the polypeptide to be detectably labelled without loss of receptor binding activity and without the problems inherent in radioiodine labelling. Methods for use of the polypeptides in competitive binding assays are also disclosed.Type: GrantFiled: August 15, 1997Date of Patent: December 5, 2000Assignee: Pharmacopeia, Inc.Inventors: James Inglese, Kenneth C. Appell, Philippe Samama, Ilana L. Stroke, Jonathan J. Burbaum
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Patent number: 5981207Abstract: Caged enzyme substrates as probes for detecting reporter enzyme activity in cell-based assays are disclosed. Caged substrates for reporter gene assays are shown as compounds of Formula I or Formula II: ##STR1## wherein Z is a luminescent functionality; G is a labile group, cleavable by enzymatic action; and K is a photolytically cleavable caging group; wherein m and n are independently 0 or 1, but m and n both can not be zero. Test kits for determining reporter enzyme activity using compounds of Formula I or Formula II and photolytic cleavage to produce a compound of Formula III:G.sub.m --Z--G.sub.n IIIare described. Methods for determining reporter enzyme activity and, by inference, the activator or suppressor activity of a test compound in a cell-based assay are also described.Type: GrantFiled: December 18, 1998Date of Patent: November 9, 1999Assignee: Pharmacopeia, Inc.Inventors: Jonathan J. Burbaum, Ke Yang
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Patent number: 5908776Abstract: Cell culture chambers and incubators are operated to grow cells under a wide variety of conditions. Where those conditions result in too rapid evaporation of the well media for low volume wells such as those found in 1536-well plates, a subchamber is provided to increase the local humidity so that media evaporation is controlled to an acceptable level. A local liquid source is provided. That liquid may be water or an isotonic solution matched to the well media for a particular application.Type: GrantFiled: April 6, 1998Date of Patent: June 1, 1999Assignee: Pharmacopeia, Inc.Inventors: Jonathan J. Burbaum, Stephen Skwish
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Patent number: 5876946Abstract: A homogeneous high throughput assay is described which screens compounds for enzyme inhibition, or receptor or other target binding. Inhibition (or binding) by the library compounds causes a change in the amount of an optically detectable label that is bound to suspendable cells or solid supports. The amounts of label bound to individual cells or solid supports are microscopically determined, and compared with the amount of label that is not bound to individual cells or solid supports. The degree of inhibition or binding is determined using this data. Confocal microscopy, and subsequent data analysis, allow the assay to be carried out without any separation step, and provide for high throughput screening of very small assay volumes using very small amounts of test compound.Type: GrantFiled: June 3, 1997Date of Patent: March 2, 1999Assignee: Pharmacopeia, Inc.Inventors: Jonathan J. Burbaum, Thomas D.Y. Chung, Gregory L. Kirk, James Inglese, Daniel Chelsky
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Patent number: 5856083Abstract: A lawn assay is described for determining compounds that affect enzyme activity or that bind to target molecules. Compounds to be screened are cleaved, and diffused from solid supports into a colloidal matrix. Enzymatic catalysis or binding to target molecules by the compounds is carried out in the matrix. Active compounds are found by monitoring a photometrically detectable change in a substrate, coenzyme, or cofactor involved in the enzymatic reaction, or in a labeled ligand bound to the target molecule, that produces a zone of activity associated with the compounds.Type: GrantFiled: November 3, 1995Date of Patent: January 5, 1999Assignee: Pharmacopeia, Inc.Inventors: Daniel Chelsky, Jonathan J. Burbaum
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Patent number: 5688997Abstract: Combinatorial libraries are disclosed which are represented by Formula I:(T'-L).sub.q -S-C(O)-L'-II' Iwherein:S is a solid support; T'-L- is an identifier residue; and -L'-II' is a ligand/linker residue. These libraries contain dihydrobenzopyrans of the formula: ##STR1## which interact (i.e., as agonists or antagonists) with .alpha. adrenergic receptors, dopamine receptors, .sigma.-opiate receptors, and K.sup.+ channels and are inhibitors of carbonic anhydrase isozymes. They are useful in the treatment of ocular diseases such as glaucoma.Type: GrantFiled: June 7, 1995Date of Patent: November 18, 1997Assignee: Pharmacopeia, Inc.Inventors: John J. Baldwin, John C. Reader, Lawrence W. Dillard, Ge Li, Jonathan J. Burbaum, Wenguang Zeng
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Patent number: 5324731Abstract: A method of inhibiting growth, transformation and/or metastasis of mammalian cells, particularly epithelial cells, in which activity of at least one enzyme, which participates in purine metabolism or regulation of nucleotide levels or the relative ratios of their phosphorylated states, is elevated. In particular, a method of inhibiting transformation, growth and/or metastasis of mammalian cells in which a DNA tumor virus, a DNA tumor virus factor or other factor which has an equivalent effect on cells has acted.Type: GrantFiled: November 7, 1990Date of Patent: June 28, 1994Assignee: Amira, Inc.Inventors: Rima Kaddurah-Daouk, James W. Lillie, Jonathan J. Burbaum
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Patent number: 5321030Abstract: The present invention relates to the use of analogs of creatine, such as cyclocreatine, as antiviral agents. Analogs of creatine can be used as antiviral agents against a variety of viruses, particularly DNA viruses, such as Herpes viruses (e.g., HSV-1, HSV-2, cytomegaloviruses, Varicella-Zoster virus) and adenovirus. The invention further relates to creatine analogs including four classes of creatine analogs selected as candidate antiviral compounds: (1) creatine analogs that can be phosphorylated by creatine kinase but differ in their phosphoryl group transfer potential, (2) bisubstrate inhibitors of creatine kinase comprising covalently linked structural analogs of adenosine triphosphate (ATP) and creatine, (3) creatine analogs which can act as irreversible inhibitors of creatine kinase, and (4) N-phosphorocreatine analogs bearing non-transferable moieties which mimic the N-phosphoryl group.Type: GrantFiled: December 20, 1991Date of Patent: June 14, 1994Assignee: Amira, Inc.Inventors: Rima Kaddurah-Daouk, James W. Lillie, Theodore S. Widlanski, Jonathan J. Burbaum, Craig J. Forsyth