Patents by Inventor Joseph G. Utermohlen

Joseph G. Utermohlen has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Patent number: 10888830
    Abstract: Provided herein are biomolecular hybridization devices comprising a substrate with a permanently and covalently attached surface of functional groups and an adsorbed monolayer of unmodified, single-stranded oligonucleotides all of which are 10 to about 24 bases in length as a saturated film of constrained oligonucleotides on the surface via direct non-covalent phosphate-surface adsorptive contact of substantially all phosphate groups of each oligonucleotide. The constrained oligonucleotides are effective to dissociably hybridize to a complementary single-stranded nucleic acid with asymmetric, non-helical base pairing and without oligonucleotide dissociation from the surface of the device. Also, provided are methods for hybridizing solution-state target nucleic acids to probe nucleic acids and for identifying a nucleotide sequence to which a nucleotide-binding protein binds using the biomolecular hybridization devices.
    Type: Grant
    Filed: March 20, 2018
    Date of Patent: January 12, 2021
    Assignees: Genomics USA, Inc., Baylor College of Medicine
    Inventors: Michael E. Hogan, Joseph G. Utermohlen, Frederick H. Eggers, Krishna Jayaraman
  • Publication number: 20190209996
    Abstract: Provided herein are biomolecular hybridization devices comprising a substrate with a permanently and covalently attached surface of functional groups and an adsorbed monolayer of unmodified, single-stranded oligonucleotides all of which are 10 to about 24 bases in length as a saturated film of constrained oligonucleotides on the surface via direct non-covalent phosphate-surface adsorptive contact of substantially all phosphate groups of each oligonucleotide. The constrained oligonucleotides are effective to dissociably hybridize to a complementary single-stranded nucleic acid with asymmetric, non-helical base pairing and without oligonucleotide dissociation from the surface of the device. Also, provided are methods for hybridizing solution-state target nucleic acids to probe nucleic acids and for identifying a nucleotide sequence to which a nucleotide-binding protein binds using the biomolecular hybridization devices.
    Type: Application
    Filed: March 20, 2018
    Publication date: July 11, 2019
    Applicant: Genomics USA, Inc.
    Inventors: Michael E. Hogan, Sergy Lemeshko, Yuri Belosludtsev, Thomas F. Powdrill, Rahul Mitra, Joseph G. Utermohlen, Frederick H. Eggers
  • Patent number: 10272409
    Abstract: Provided herein are biomolecular hybridization devices comprising a substrate with a permanently and covalently attached surface of functional groups and an adsorbed monolayer of unmodified, single-stranded oligonucleotides all of which are 10 to about 24 bases in length as a saturated film of constrained oligonucleotides on the surface via direct non-covalent phosphate-surface adsorptive contact of substantially all phosphate groups of each oligonucleotide. The constrained oligonucleotides are effective to dissociably hybridize to a complementary single-stranded nucleic acid with asymmetric, non-helical base pairing and without oligonucleotide dissociation from the surface of the device. Also, provided are methods for hybridizing solution-state target nucleic acids to probe nucleic acids and for identifying a nucleotide sequence to which a nucleotide-binding protein binds using the biomolecular hybridization devices.
    Type: Grant
    Filed: April 4, 2008
    Date of Patent: April 30, 2019
    Inventors: Michael E. Hogan, Sergy Lemeshko, Yuri Belosludtsev, Thomas F. Powdrill, Rahul Mitra, Joseph G. Utermohlen, Frederick H. Eggers
  • Patent number: 8524877
    Abstract: The present invention provides oligonucleotide probes and oligonucleotide probe collections for detecting or localizing a plurality nucleic acid target genes within a cell or tissue sample. Specifically, the invention provides collections of oligonucleotide probes for use in in situ hybridization analyses in which each probe has a label-domain with the sequence formulas of (CTATTTT)nCT, (AAAATAG)n or (TTTTATC)n or (GATAAAA)n in which all cases “n” would equal 1 or greater. The present invention also provides collections or “cocktails” of oligonucleotide probes for detecting or localizing specific nucleic acid target genes within a cell or tissue sample.
    Type: Grant
    Filed: June 28, 2012
    Date of Patent: September 3, 2013
    Assignee: Ventana Medical Systems, Inc.
    Inventors: Joseph G. Utermohlen, John F. Connaughton
  • Publication number: 20130101981
    Abstract: Matrices for manipulation of biopolymers, including the separation, purification, immobilization and archival storage of biopolymers is disclosed.
    Type: Application
    Filed: November 23, 2011
    Publication date: April 25, 2013
    Inventors: Joseph G. Utermohlen, Michael E. Hogan
  • Publication number: 20120309951
    Abstract: The present invention provides oligonucleotide probes and oligonucleotide probe collections for detecting or localizing a plurality nucleic acid target genes within a cell or tissue sample. Specifically, the invention provides collections of oligonucleotide probes for use in in situ hybridization analyses in which each probe has a label-domain with the sequence formulas of (CTATTTT)nCT, (AAAATAG)n or (TTTTATC)n or (GATAAAA)n in which all cases “n” would equal 1 or greater. The present invention also provides collections or “cocktails” of oligonucleotide probes for detecting or localizing specific nucleic acid target genes within a cell or tissue sample.
    Type: Application
    Filed: June 28, 2012
    Publication date: December 6, 2012
    Inventors: Joseph G. Utermohlen, John F. Connaughton
  • Patent number: 8288169
    Abstract: Materials and methods for surface mediated self-assembly of nanoparticles for the isolation of biomolecules is provided.
    Type: Grant
    Filed: March 24, 2008
    Date of Patent: October 16, 2012
    Assignee: Argylla Technologies
    Inventors: Joseph G. Utermohlen, Michael E. Hogan, Paul E. Diggins
  • Patent number: 8236502
    Abstract: The present invention provides oligonucleotide probes and oligonucleotide probe collections and protein labeling for detecting or localizing a plurality nucleic acid target genes or antigens within a cell or tissue sample. Specifically, the invention provides collections of oligonucleotide probes for use in in situ hybridization analyses in which each probe has a label-domain with the sequence formulas of (CTATTTT)nCT, (AAAATAG)n or (TTTTATC)n or (GATAAAA)n in which all cases “n” would equal 1 or greater. The present invention provides collections or “cocktails” of oligonucleotide probes for detecting or localizing specific nucleic acid target genes within a cell or tissue sample.
    Type: Grant
    Filed: October 22, 2010
    Date of Patent: August 7, 2012
    Assignee: Ventana Medical Systems, Inc.
    Inventors: Joseph G. Utermohlen, John F. Connaughton
  • Publication number: 20120190837
    Abstract: Materials and methods for manipulation of biopolymers, including the separation, purification, immobilization, and archival storage of biopolymers is disclosed.
    Type: Application
    Filed: June 20, 2011
    Publication date: July 26, 2012
    Inventors: Joseph G. Utermohlen, Michael F. Hogan, Paul Diggins
  • Patent number: 7964380
    Abstract: Matrices for manipulation of biopolymers, including the separation, purification, immobilization and archival storage of biopolymers is disclosed.
    Type: Grant
    Filed: January 23, 2006
    Date of Patent: June 21, 2011
    Assignee: Argylia Technologies
    Inventors: Joseph G. Utermohlen, Michael E. Hogan, Paul Diggins
  • Publication number: 20110034682
    Abstract: The present invention provides oligonucleotide probes and oligonucleotide probe collections and protein labeling for detecting or localizing a plurality nucleic acid target genes or antigens within a cell or tissue sample. Specifically, the invention provides collections of oligonucleotide probes for use in in situ hybridization analyses in which each probe has a label-domain with the sequence formulas of (CTATTTT)nCT, (AAAATAG)n or (TTTTATC)n or (GATAAAA)n in which all cases “n” would equal 1 or greater. The present invention provides collections or “cocktails” of oligonucleotide probes for detecting or localizing specific nucleic acid target genes within a cell or tissue sample.
    Type: Application
    Filed: October 22, 2010
    Publication date: February 10, 2011
    Inventors: Joseph G. Utermohlen, John F. Connaughton
  • Patent number: 7838655
    Abstract: The present invention provides oligonucleotide probes and oligonucleotide probe collections and protein labeling for detecting or localizing a plurality nucleic acid target genes or antigens within a cell or tissue sample. Specifically, the invention provides collections of oligonucleotide probes for use in in situ hybridization analyses in which each probe has a label-domain with the sequence formulas of (CTATTTT)nCT, (AAAATAG)n or (TTTTATC)n or (GATAAAA)n in which all cases “n” would equal 1 or greater. The present invention provides collections or “cocktails” of oligonucleotide probes for detecting or localizing specific nucleic acid target genes within a cell or tissue sample.
    Type: Grant
    Filed: September 6, 2001
    Date of Patent: November 23, 2010
    Assignee: Ventana Medical Systems, Inc.
    Inventors: Joseph G. Utermohlen, John F. Connaughton
  • Publication number: 20090208919
    Abstract: Matrices for manipulation of biopolymers, including the separation, purification, immobilization and archival storage of biopolymers is disclosed.
    Type: Application
    Filed: January 16, 2008
    Publication date: August 20, 2009
    Applicant: Argylla Technologies, LLP
    Inventors: Joseph G. Utermohlen, Michael E. Hogan
  • Publication number: 20090182120
    Abstract: Materials and methods for surface mediated self assembly of nanoparticles for the isolation of biomolecules is provided.
    Type: Application
    Filed: March 24, 2008
    Publication date: July 16, 2009
    Applicant: Argylla Technologies, LLP
    Inventors: Joseph G. Utermohlen, Michael E. Hogan, Paul E. Diggins
  • Publication number: 20090011949
    Abstract: Provided herein are biomolecular hybridization devices comprising a substrate with a permanently and covalently attached surface of functional groups and an adsorbed monolayer of unmodified, single-stranded oligonucleotides all of which are 10 to about 24 bases in length as a saturated film of constrained oligonucleotides on the surface via direct non-covalent phosphate-surface adsorptive contact of substantially all phosphate groups of each oligonucleotide. The constrained oligonucleotides are effective to dissociably hybridize to a complementary single-stranded nucleic acid with asymmetric, non-helical base pairing and without oligonucleotide dissociation from the surface of the device. Also, provided are methods for hybridizing solution-state target nucleic acids to probe nucleic acids and for identifying a nucleotide sequence to which a nucleotide-binding protein binds using the biomolecular hybridization devices.
    Type: Application
    Filed: April 4, 2008
    Publication date: January 8, 2009
    Inventors: Michael E. Hogan, Sergy Lemeshko, Yuri Belosludtsev, Thomas F. Powdrill, Rahul Mitra, Joseph G. Utermohlen, Frederick H. Eggers
  • Publication number: 20040014088
    Abstract: The present invention provides oligonucleotide probes and oligonucleotide probe collections and protein labeling for detecting or localizing a plurality nucleic acid target genes or antigens within a cell or tissue sample. Specifically, the provides collections of oligonucleotide probe for use in in situ hybridization analyses in which each probe has a label-domain with the sequence formulas of (CTATTTT)n, (AAAATAG)n or (TTTTATC)n or (GATAAAA)n in which all cases “n” would equal 1 or greater. The present invention provides collections or “cocktails” of oligonucleotide probes for detecting or localizing specific nucleic acid target genes within a cell or tissue sample.
    Type: Application
    Filed: July 21, 2003
    Publication date: January 22, 2004
    Inventors: Joseph G. Utermohlen, John F. Connaughton
  • Patent number: 6210574
    Abstract: A system for separating nucleated cells from a blood sample includes a charge-flow separator (CFS), which separates blood into fractions according to the surface charge density characteristics coupled with an affinity-filtration separator which either outputs a separated blood fraction to the CFS or receives a separated blood fraction from the CFS. The system permits separation of nucleated fetal red blood cells, erythroid progenitor cells and other nucleated cells found in blood samples.
    Type: Grant
    Filed: May 24, 1999
    Date of Patent: April 3, 2001
    Assignee: BioSeparations, Inc.
    Inventors: David W. Sammons, Garland E. Twitty, Joseph G. Utermohlen, Rizwan Sharnez
  • Patent number: 6194146
    Abstract: A method and single solution denaturation and hybridization useful with probes for hybridizing DNA or RNA sequences. The inventive protocol employs a carbinol containing hybridization solution.
    Type: Grant
    Filed: October 10, 1997
    Date of Patent: February 27, 2001
    Assignee: BioSeparations, Inc.
    Inventors: Joseph G. Utermohlen, David W. Sammons
  • Patent number: 5948617
    Abstract: A method and single solution denaturation and hybridization solution useful with synthetic oligonucleotide probes for hybridizing DNA or RNA sequences by in situ hybridization. The inventive protocol employs synthetic oligonucleotide probes and a glycerol-based hybridization solution which is particularly useful in fluorescence labeling of chromosomes X, Y, 13, 18 and 21 in human lymphocytes, amniocytes and metaphase chromosomes, with the label being sufficiently stable to permit archival storage of the labeled sample for later hybridization or analysis.
    Type: Grant
    Filed: June 13, 1997
    Date of Patent: September 7, 1999
    Assignee: BioSpeparations, Inc.
    Inventors: Joseph G. Utermohlen, David W. Sammons
  • Patent number: 5948278
    Abstract: A method for enriching rare cell populations from a whole blood sample by separating rare cell fractions from whole blood sample according to the relative charge density and/or the relative binding affinity for a leukocyte depletion solid phase matrix is described. The enrichment method may be operated stand alone, or as a pre or post-processing step in conjunction with a charge-flow separation method.
    Type: Grant
    Filed: October 10, 1997
    Date of Patent: September 7, 1999
    Assignee: BioSeparations, Inc.
    Inventors: David W. Sammons, Michael Manley, Joseph G. Utermohlen, Garland E. Twitty