Patents by Inventor Matthew O'Keefe

Matthew O'Keefe has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Patent number: 9442952
    Abstract: Metadata structures and related locking techniques to improve performance and scalability in a cluster file system are disclosed. In one implementation, a method includes receiving, by a server, a request for a first file, retrieving, by the server, the first file and metadata for a second file that is related to the first file, and sending, by the server in response to the retrieving and in advance of any request for the metadata for the second file, an asynchronous lock request to obtain a lock for accessing at least a portion of the metadata for the second file.
    Type: Grant
    Filed: July 22, 2014
    Date of Patent: September 13, 2016
    Assignee: Red Hat, Inc.
    Inventors: Kenneth Preslan, Michael J. Declerk, Matthew O'Keefe
  • Patent number: 8906618
    Abstract: Disclosed herein are apparatuses and methods for conducting multiple simultaneous micro-volume chemical and biochemical reactions in an array format. In one embodiment, the format comprises an array of microholes in a substrate. Besides serving as an ordered array of sample chambers allowing the performance of multiple parallel reactions, the arrays can be used for reagent storage and transfer, library display, reagent synthesis, assembly of multiple identical reactions, dilution and desalting. Use of the arrays facilitates optical analysis of reactions, and allows optical analysis to be conducted in real time. Included within the invention are kits comprising a microhole apparatus and a reaction component of the method(s) to be carried out in the apparatus.
    Type: Grant
    Filed: October 7, 2011
    Date of Patent: December 9, 2014
    Assignee: The Board of Trustees of the Leland Stanford Junior University
    Inventors: Matthew O'Keefe, Pamela K. Foreman
  • Publication number: 20140330802
    Abstract: Metadata structures and related locking techniques to improve performance and scalability in a cluster file system are disclosed. In one implementation, a method includes receiving, by a server, a request for a first file, retrieving, by the server, the first file and metadata for a second file that is related to the first file, and sending, by the server in response to the retrieving and in advance of any request for the metadata for the second file, an asynchronous lock request to obtain a lock for accessing at least a portion of the metadata for the second file.
    Type: Application
    Filed: July 22, 2014
    Publication date: November 6, 2014
    Inventors: Kenneth Preslan, Michael J. Declerk, Matthew O'Keefe
  • Patent number: 8805889
    Abstract: A cluster file system is disclosed. A plurality of disk servers, operating as a single distributed disk server layer, are connected to the one or more physical disks. Each disk server stores metadata for each of the files. A plurality of lock servers, having one or more locks for each file and associated file system metadata operates as a single centralized distributed lock server to coordinate access to the files stored by the disk server layer. A plurality of asynchronous file servers, operating as a single distributed file server layer in response to a request for a file from a user program: (i) retrieves the requested file from the disk server layer and at least one lock, associated with the retrieved file, from the lock server, and (ii) retrieves metadata for at least one file that is related to the requested files, and at least one lock, for each file that has had its metadata retrieved.
    Type: Grant
    Filed: December 29, 2008
    Date of Patent: August 12, 2014
    Assignee: Red Hat, Inc.
    Inventors: Kenneth Preslan, Michael J. Declerk, Matthew O'Keefe
  • Publication number: 20120077194
    Abstract: Disclosed herein are apparatuses and methods for conducting multiple simultaneous micro-volume chemical and biochemical reactions in an array format. In one embodiment, the format comprises an array of microholes in a substrate. Besides serving as an ordered array of sample chambers allowing the performance of multiple parallel reactions, the arrays can be used for reagent storage and transfer, library display, reagent synthesis, assembly of multiple identical reactions, dilution and desalting. Use of the arrays facilitates optical analysis of reactions, and allows optical analysis to be conducted in real time. Included within the invention are kits comprising a microhole apparatus and a reaction component of the method(s) to be carried out in the apparatus.
    Type: Application
    Filed: October 7, 2011
    Publication date: March 29, 2012
    Inventors: Matthew O'Keefe, Pamela K. Foreman
  • Patent number: 8053185
    Abstract: Disclosed herein are apparatuses and methods for conducting multiple simultaneous micro-volume chemical and biochemical reactions in an array format. In one embodiment, the format comprises an array of microholes in a substrate. Besides serving as an ordered array of sample chambers allowing the performance of multiple parallel reactions, the arrays can be used for reagent storage and transfer, library display, reagent synthesis, assembly of multiple identical reactions, dilution and desalting. Use of the arrays facilitates optical analysis of reactions, and allows optical analysis to be conducted in real time. Included within the invention are kits comprising a microhole apparatus and a reaction component of the method(s) to be carried out in the apparatus.
    Type: Grant
    Filed: October 20, 2009
    Date of Patent: November 8, 2011
    Assignee: Board of Trustees of The Leland Stanford Junior University
    Inventors: Matthew O'Keefe, Pamela K. Foreman
  • Patent number: 7833719
    Abstract: Disclosed herein are apparatuses and methods for conducting multiple simultaneous micro-volume chemical and biochemical reactions in an array format. In one embodiment, the format comprises an array of microholes in a substrate. Besides serving as an ordered array of sample chambers allowing the performance of multiple parallel reactions, the arrays can be used for reagent storage and transfer, library display, reagent synthesis, assembly of multiple identical reactions, dilution and desalting. Use of the arrays facilitates optical analysis of reactions, and allows optical analysis to be conducted in real time. Included within the invention are kits comprising a microhole apparatus and a reaction component of the method(s) to be carried out in the apparatus.
    Type: Grant
    Filed: December 20, 2007
    Date of Patent: November 16, 2010
    Assignee: The Board of Trustees of the Leland Stanford Junior University
    Inventors: Matthew O'Keefe, Pamela K. Foreman
  • Publication number: 20100075330
    Abstract: Disclosed herein are apparatuses and methods for conducting multiple simultaneous micro-volume chemical and biochemical reactions in an array format. In one embodiment, the format comprises an array of microholes in a substrate. Besides serving as an ordered array of sample chambers allowing the performance of multiple parallel reactions, the arrays can be used for reagent storage and transfer, library display, reagent synthesis, assembly of multiple identical reactions, dilution and desalting. Use of the arrays facilitates optical analysis of reactions, and allows optical analysis to be conducted in real time. Included within the invention are kits comprising a microhole apparatus and a reaction component of the method(s) to be carried out in the apparatus.
    Type: Application
    Filed: October 20, 2009
    Publication date: March 25, 2010
    Inventors: Matthew O'Keefe, Pamela K. Foreman
  • Patent number: 7604983
    Abstract: Disclosed herein are apparatuses and methods for conducting multiple simultaneous micro-volume chemical and biochemical reactions in an array format. In one embodiment, the format comprises an array of microholes in a substrate. Besides serving as an ordered array of sample chambers allowing the performance of multiple parallel reactions, the arrays can be used for reagent storage and transfer, library display, reagent synthesis, assembly of multiple identical reactions, dilution and desalting. Use of the arrays facilitates optical analysis of reactions, and allows optical analysis to be conducted in real time. Included within the invention are kits comprising a microhole apparatus and a reaction component of the method(s) to be carried out in the apparatus.
    Type: Grant
    Filed: February 9, 2005
    Date of Patent: October 20, 2009
    Assignee: Board of Trustees of the Leland Stanford Junior University
    Inventors: Matthew O'Keefe, Pamela K. Foreman
  • Publication number: 20090119304
    Abstract: A cluster file system is disclosed. A plurality of disk servers, operating as a single distributed disk server layer, are connected to the one or more physical disks. Each disk server stores metadata for each of the files. A plurality of lock servers, having one or more locks for each file and associated file system metadata operates as a single centralized distributed lock server to coordinate access to the files stored by the disk server layer. A plurality of asynchronous file servers, operating as a single distributed file server layer in response to a request for a file from a user program: (i) retrieves the requested file from the disk server layer and at least one lock, associated with the retrieved file, from the lock server, and (ii) retrieves metadata for at least one file that is related to the requested files, and at least one lock, for each file that has had its metadata retrieved.
    Type: Application
    Filed: December 29, 2008
    Publication date: May 7, 2009
    Applicant: Red Hat, Inc.
    Inventors: Kenneth PRESLAN, Michael J. Declerk, Matthew O'Keefe
  • Patent number: 7487228
    Abstract: A cluster file system is disclosed. A plurality of disk servers, operating as a single distributed disk server layer, are connected to the one or more physical disks. Each disk server stores metadata for each of the files. A plurality of lock servers, having one or more locks for each file and associated file system metadata operates as a single centralized distributed lock server to coordinate access to the files stored by the disk server layer. A plurality of asynchronous file servers, operating as a single distributed file server layer in response to a request for a file from a user program: (i) retrieves the requested file from the disk server layer and at least one lock, associated with the retrieved file, from the lock server, and (ii) retrieves metadata for at least one file that is related to the requested files, and at least one lock, for each file that has had its metadata retrieved.
    Type: Grant
    Filed: December 30, 2004
    Date of Patent: February 3, 2009
    Assignee: Red Hat, Inc.
    Inventors: Kenneth Preslan, Michael J. Declerck, Matthew O'Keefe
  • Patent number: 7406473
    Abstract: A distributed file system is disclosed. A plurality of disk servers, operating as a single distributed disk server layer, are connected to the one or more physical disks. Each disk server stores meta-data for each of the files. A plurality of lock servers, having one or more locks for each file operates as a single distributed lock server to coordinate access to the files stored by the disk server layer. A plurality of asynchronous file servers, operating as a single distributed file server layer in response to a request for a file from a user program: (i) retrieves the requested file from the disk server layer and at least one lock, associated with the retrieved file, from the lock server, and (ii) retrieves meta-data for at least one file that is related to the requested files, and at least one lock, for each file that has had its meta-data retrieved.
    Type: Grant
    Filed: January 30, 2003
    Date of Patent: July 29, 2008
    Assignee: Red Hat, Inc.
    Inventors: Jonathan Brassow, Michael J. Declerck, Andrew Lewis, Adam Manthei, Matthew O'Keefe, Kenneth Preslan, David Teigland
  • Publication number: 20080108112
    Abstract: Disclosed herein are apparatuses and methods for conducting multiple simultaneous micro-volume chemical and biochemical reactions in an array format. In one embodiment, the format comprises an array of microholes in a substrate. Besides serving as an ordered array of sample chambers allowing the performance of multiple parallel reactions, the arrays can be used for reagent storage and transfer, library display, reagent synthesis, assembly of multiple identical reactions, dilution and desalting. Use of the arrays facilitates optical analysis of reactions, and allows optical analysis to be conducted in real time. Included within the invention are kits comprising a microhole apparatus and a reaction component of the method(s) to be carried out in the apparatus.
    Type: Application
    Filed: December 20, 2007
    Publication date: May 8, 2008
    Inventors: Matthew O'keefe, Pamela Foreman
  • Patent number: 7332271
    Abstract: Disclosed herein are apparatuses and methods for conducting multiple simultaneous micro-volume chemical and biochemical reactions in an array format. In one embodiment, the format comprises an array of microholes in a substrate. Besides serving as an ordered array of sample chambers allowing the performance of multiple parallel reactions, the arrays can be used for reagent storage and transfer, library display, reagent synthesis, assembly of multiple identical reactions, dilution and desalting. Use of the arrays facilitates optical analysis of reactions, and allows optical analysis to be conducted in real time. Included within the invention are kits comprising a microhole apparatus and a reaction component of the method(s) to be carried out in the apparatus.
    Type: Grant
    Filed: February 20, 2001
    Date of Patent: February 19, 2008
    Assignee: Board of Trustees of the Leland Stanford Junior University
    Inventors: Matthew O'Keefe, Pamela K. Foreman
  • Patent number: 7048807
    Abstract: A cerium-based coating for corrosion resistance is applied by exposing a cleaned aluminum-based component to a corrosion-inhibiting cerium solution containing cerium ions in the presence of an oxidizing agent. The coating deposits spontaneously without an external source of electrons.
    Type: Grant
    Filed: August 8, 2002
    Date of Patent: May 23, 2006
    Assignee: The Curators of the University of Missouri
    Inventors: James O. Stoffer, Thomas J. O'Keefe, Matthew O'Keefe, Eric L. Morris, Scott Hayes, Paul Yu, Alex Williams, Berny F. Rivera Vasquez, Xuan Lin
  • Publication number: 20050285144
    Abstract: A III-V field effect transistor comprising a semiconductor channel layer having an electrically conducting channel; an ohmic contact layer on the semiconductor channel layer, the ohmic contact layer having a recess structure disposed therethrough to the semiconductor channel layer; the bottom of the ohmic contact layer comprising an etch stop layer comprising Aluminium and Phosphorous and defining the shape of the recess at its junction with the semiconductor channel layer.
    Type: Application
    Filed: June 15, 2005
    Publication date: December 29, 2005
    Inventors: Matthew O'Keefe, Michael Clausen, Richard Davies, Robert Grey
  • Publication number: 20050148066
    Abstract: Disclosed herein are apparatuses and methods for conducting multiple simultaneous micro-volume chemical and biochemical reactions in an array format. In one embodiment, the format comprises an array of microholes in a substrate. Besides serving as an ordered array of sample chambers allowing the performance of multiple parallel reactions, the arrays can be used for reagent storage and transfer, library display, reagent synthesis, assembly of multiple identical reactions, dilution and desalting. Use of the arrays facilitates optical analysis of reactions, and allows optical analysis to be conducted in real time. Included within the invention are kits comprising a microhole apparatus and a reaction component of the method(s) to be carried out in the apparatus.
    Type: Application
    Filed: February 9, 2005
    Publication date: July 7, 2005
    Inventors: Matthew O'Keefe, Pamela Foreman
  • Publication number: 20040028820
    Abstract: A cerium-based coating for corrosion resistance is applied by exposing a cleaned aluminum-based component to a corrosion-inhibiting cerium solution containing cerium ions in the presence of an oxidizing agent. The coating deposits spontaneously without an external source of electrons.
    Type: Application
    Filed: August 8, 2002
    Publication date: February 12, 2004
    Inventors: James O. Stoffer, Thomas J. O'Keefe, Matthew O'Keefe, Eric L. Morris, Scott Hayes, Paul Yu, Alex Williams, Berny F. Rivera Vasquez, Xuan Lin
  • Publication number: 20020151040
    Abstract: Disclosed herein are apparatuses and methods for conducting multiple simultaneous micro-volume chemical and biochemical reactions in an array format. In one embodiment, the format comprises an array of microholes in a substrate. Besides serving as an ordered array of sample chambers allowing the performance of multiple parallel reactions, the arrays can be used for reagent storage and transfer, library display, reagent synthesis, assembly of multiple identical reactions, dilution and desalting. Use of the arrays facilitates optical analysis of reactions, and allows optical analysis to be conducted in real time. Included within the invention are kits comprising a microhole apparatus and a reaction component of the method(s) to be carried out in the apparatus.
    Type: Application
    Filed: August 22, 2001
    Publication date: October 17, 2002
    Inventors: Matthew O' Keefe, Pamela K. Foreman
  • Publication number: 20020072096
    Abstract: Disclosed herein are apparatuses and methods for conducting multiple simultaneous micro-volume chemical and biochemical reactions in an array format. In one embodiment, the format comprises an array of microholes in a substrate. Besides serving as an ordered array of sample chambers allowing the performance of multiple parallel reactions, the arrays can be used for reagent storage and transfer, library display, reagent synthesis, assembly of multiple identical reactions, dilution and desalting. Use of the arrays facilitates optical analysis of reactions, and allows optical analysis to be conducted in real time. Included within the invention are kits comprising a microhole apparatus and a reaction component of the method(s) to be carried out in the apparatus.
    Type: Application
    Filed: February 20, 2001
    Publication date: June 13, 2002
    Inventors: Matthew O'Keefe, Pamela K. Foreman