Patents by Inventor Michael C. Pirrung

Michael C. Pirrung has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20030235853
    Abstract: A method and apparatus for preparation of a substrate containing a plurality of sequences. Photoremovable groups are attached to a surface of a substrate. Selected regions of the substrate are exposed to light so as to activate the selected areas. A monomer, also containing a photoremovable group, is provided to the substrate to bind at the selected areas. The process is repeated using a variety of monomers such as amino acids until sequences of a desired length are obtained. Detection methods and apparatus are also disclosed.
    Type: Application
    Filed: May 2, 2003
    Publication date: December 25, 2003
    Applicant: Affymetrix, INC.
    Inventors: Lubert Stryer, Stephen P.A. Fodor, J. Leighton Read, Michael C. Pirrung
  • Patent number: 6660234
    Abstract: A method and apparatus for preparation of a substrate containing a plurality of sequences. Photoremovable groups are attached to a surface of a substrate. Selected regions of the substrate are exposed to light so as to activate the selected areas. A monomer, also containing a photoremovable group, is provided to the substrate to bind at the selected areas. The process is repeated using a variety of monomers such as amino acids until sequences of a desired length are obtained. Detection methods and apparatus are also disclosed.
    Type: Grant
    Filed: May 15, 2002
    Date of Patent: December 9, 2003
    Assignee: Affymetrix, Inc.
    Inventors: Luburt Stryer, Stephen P. A. Fodor, J. Leighton Read, Michael C. Pirrung
  • Patent number: 6646243
    Abstract: A method and apparatus for preparation of a substrate containing a plurality of sequences. Photoremovable groups are attached to a surface of a substrate. Selected regions of the substrate are exposed to light so as to activate the selected areas. A monomer, also containing a photoremovable group, is provided to the substrate to bind at the selected areas. The process is repeated using a variety of monomers such as amino acids until sequences of a desired length are obtained. Detection methods and apparatus are also disclosed.
    Type: Grant
    Filed: March 15, 2002
    Date of Patent: November 11, 2003
    Assignee: Affymetrix, Inc.
    Inventors: Michael C. Pirrung, J. Leighton Read, Stephen P. A. Fodor, Lubert Stryer
  • Patent number: 6630308
    Abstract: A method and apparatus for preparation of a substrate containing a plurality of sequences. Photoremovable groups are attached to a surface of a substrate. Selected regions of the substrate are exposed to light so as to activate the selected areas. A monomer, also containing a photoremovable group, is provided to the substrate to bind at the selected areas. The process is repeated using a variety of monomers such as amino acids until sequences of a desired length are obtained. Detection methods and apparatus are also disclosed.
    Type: Grant
    Filed: December 6, 2001
    Date of Patent: October 7, 2003
    Assignee: Affymetrix, Inc.
    Inventors: Lubert Stryer, Michael C. Pirrung, J. Leighton Read, Stephen P. A. Fodor
  • Publication number: 20030170637
    Abstract: A method for determining the exons present in a potentially variantly spliced mRNA is carried out by: (a) providing a potentially variantly spliced mRNA; (b) providing an array, the array comprising a plurality of different primers immobilized on a solid support at distinct locations thereon, with each of the plurality of different primers selectively hybridizing to a corresponding one of the plurality of exons potentially within the mRNA; (c) contacting the mRNA to the array that a duplex is formed between each different primer and each corresponding exon if the corresponding exon is included in the mRNA; (d) subjecting the duplexes to a primer extension reaction so that the primers in the duplexes are extended with at least one labeled base; and then (e) detecting the presence or absence of the at least one labeled base in each of the plurality of primers, the presence of the at least one labeled base indicating the presence of the exon to which the primer selectively binds in the potentially variantly spli
    Type: Application
    Filed: March 6, 2002
    Publication date: September 11, 2003
    Inventors: Michael C. Pirrung, Hyunsoo Kim
  • Patent number: 6610482
    Abstract: The present invention provides methods and apparatus for sequencing, fingerprinting and mapping biological macromolecules, typically biological polymers. The methods make use of a plurality of sequence specific recognition reagents which can also be used for classification of biological samples, and to characterize their sources.
    Type: Grant
    Filed: April 24, 2000
    Date of Patent: August 26, 2003
    Assignee: Affymetrix, Inc.
    Inventors: Stephen P. A. Fodor, Michael C. Pirrung, Lubert Stryer, J. Leighton Read
  • Patent number: 6600031
    Abstract: A synthetic strategy for the creation of large scale chemical diversity. Solid-phase chemistry, photolabile protecting groups, and photolithography are used to achieve light-directed spatially-addressable parallel chemical synthesis. Binary masking techniques are utilized in one embodiment. A reactor system, photoremovable protective groups, and improved data collection and handling techniques are also disclosed. A technique for screening linker molecules is also provided.
    Type: Grant
    Filed: April 21, 1998
    Date of Patent: July 29, 2003
    Assignee: Affymetrix, Inc.
    Inventors: Stephen P. A. Fodor, Lubert Stryer, J. Leighton Read, Michael C. Pirrung
  • Publication number: 20030119008
    Abstract: A synthetic strategy for the creation of large scale chemical diversity. Solid-phase chemistry, photolabile protecting groups, and photolithography are used to achieve light-directed spatially-addressable parallel chemical synthesis. Binary masking techniques are utilized in one embodiment. A reactor system, photoremovable protective groups, and improved data collection and handling techniques are also disclosed. A technique for screening linker molecules is also provided.
    Type: Application
    Filed: December 28, 2001
    Publication date: June 26, 2003
    Applicant: Affymetrix, Inc.
    Inventors: Stephen P.A. Fodor, Lubert Stryer, J. Leighton Read, Michael C. Pirrung
  • Publication number: 20030108899
    Abstract: A synthetic strategy for the creation of large scale chemical diversity. Solid-phase chemistry, photolabile protecting groups, and photolithography are used to achieve light-directed spatially-addressable parallel chemical synthesis. Binary masking techniques are utilized in one embodiment. A reactor system, photoremovable protecting groups, and improved data collection and handling techniques are also disclosed. A technique for screening linker molecules is also provided.
    Type: Application
    Filed: July 8, 2002
    Publication date: June 12, 2003
    Applicant: Affymetrix, INC.
    Inventors: Stephen P.A. Fodor, Lubert Stryer, Michael C. Pirrung, J. Leighton Read
  • Patent number: 6566495
    Abstract: A synthetic strategy for the creation of large scale chemical diversity. Solid-phase chemistry, photolabile protecting groups, and photolithography are used to achieve light-directed spatially-addressable parallel chemical synthesis. Binary masking techniques are utilized in one embodiment. A reactor system, photoremovable protective groups, and improved data collection and handling techniques are also disclosed. A technique for screening linker molecules is also provided.
    Type: Grant
    Filed: December 17, 1999
    Date of Patent: May 20, 2003
    Assignee: Affymetrix, Inc.
    Inventors: Stephen P. A. Fodor, Lubert Stryer, J. Leighton Read, Michael C. Pirrung
  • Publication number: 20030064391
    Abstract: A method and apparatus for preparation of a substrate containing a plurality of sequences. Photoremovable groups are attached to a surface of a substrate. Selected regions of the substrate are exposed to light so as to activate the selected areas. A monomer, also containing a photoremovable group, is provided to the substrate to bind at the selected areas. The process is repeated using a variety of monomers such as amino acids until sequences of a desired length are obtained. Detection methods and apparatus are also disclosed.
    Type: Application
    Filed: May 20, 2002
    Publication date: April 3, 2003
    Applicant: Affymetrix, Inc.
    Inventors: Michael C. Pirrung, J. Leighton Read, Stephen P. A. Fodor, Lubert Stryer
  • Publication number: 20030013100
    Abstract: A method and apparatus for preparation of a substrate containing a plurality of sequences. Photoremovable groups are attached to a surface of a substrate. Selected regions of the substrate are exposed to light so as to activate the selected areas. A monomer, also containing a photoremovable group, is provided to the substrate to bind at the selected areas. The process is repeated using a variety of monomers such as amino acids until sequences of a desired length are obtained. Detection methods and apparatus are also disclosed.
    Type: Application
    Filed: March 15, 2002
    Publication date: January 16, 2003
    Applicant: Affymetrix, INC.
    Inventors: Stephen P.A. Fodor, J. Leighton Read, Lubert Stryer, Michael C. Pirrung
  • Patent number: 6506558
    Abstract: A synthetic strategy for the creation of large scale chemical diversity. Solid-phase chemistry, photolabile protecting groups, and photolithography are used to achieve light-directed spatially-addressable parallel chemical synthesis. Binary masking techniques are utilized in one embodiment. A reactor system, photoremovable protecting groups, and improved data collection and handling techniques are also disclosed. A technique for screening linker molecules is also provided.
    Type: Grant
    Filed: November 29, 1995
    Date of Patent: January 14, 2003
    Assignee: Affymetrix Inc.
    Inventors: Stephen P. A. Fodor, Lubert Stryer, Michael C. Pirrung, J. Leighton Read, Paul D. Hoeprich, Jr.
  • Publication number: 20020192693
    Abstract: A method and apparatus for preparation of a substrate containing a plurality of sequences. Photoremovable groups are attached to a surface of a substrate. Selected regions of the substrate are exposed to light so as to activate the selected areas. A monomer, also containing a photoremovable group, is provided to the substrate to bind at the selected areas. The process is repeated using a variety of monomers such as amino acids until sequences of a desired length are obtained. Detection methods and apparatus are also disclosed.
    Type: Application
    Filed: May 15, 2002
    Publication date: December 19, 2002
    Applicant: Affymetrix, Inc.
    Inventors: Michael C. Pirrung, J. Leighton Read, Stephen P.A. Fodor, Lubert Stryer
  • Publication number: 20020155588
    Abstract: A synthetic strategy for the creation of large scale chemical diversity. Solid-phase chemistry, photolabile protecting groups, and photolithography are used to achieve light-directed spatially-addressable parallel chemical synthesis. Binary masking techniques are utilized in one embodiment. A reactor system, photoremovable protective groups, and improved data collection and handling techniques are also disclosed. A technique for screening linker molecules is also provided.
    Type: Application
    Filed: September 5, 2001
    Publication date: October 24, 2002
    Applicant: Affymetrix, Inc.
    Inventors: Stephen P.A. Fodor, Lubert Stryer, Michael C. Pirrung, J. Leighton Read
  • Publication number: 20020137096
    Abstract: A synthetic strategy for the creation of large scale chemical diversity. Solid-phase chemistry, photolabile protecting groups, and photolithography are used to achieve light-directed spatially-addressable parallel chemical synthesis. Binary masking techniques are utilized in one embodiment. A reactor system, photoremovable protecting groups, and improved data collection and handling techniques are also disclosed. A technique for screening linker molecules is also provided.
    Type: Application
    Filed: December 14, 2001
    Publication date: September 26, 2002
    Applicant: Affymetrix, Inc.
    Inventors: Stephen P.A. Fodor, Lubert Stryer, Michael C. Pirrung, J. Leighton Read, Paul D. Hoeprich
  • Patent number: 6420169
    Abstract: A method for synthesizing oligonucleotides on a solid substrate. The method provides for the irradiation of a first predefined region of the substrate without irradiation of a second predefined region of the substrate. The irradiation step removes a protecting group therefrom. The substrate is contacted with a first nucleotide to couple the nucleotide to the substrate in the first predefined region. By repeating these steps, an array of diverse oligonucleotides is formed on the substrate.
    Type: Grant
    Filed: November 30, 1994
    Date of Patent: July 16, 2002
    Assignee: Affymetrix, Inc.
    Inventors: J. Leighton Read, Stephen P.A. Fodor, Lubert Stryer, Michael C. Pirrung, Paul D. Hoeprich, Jr.
  • Patent number: 6416952
    Abstract: The present invention provides methods and apparatus for sequencing, fingerprinting and mapping biological macromolecules, typically biological polymers. The methods make use of a plurality of sequence specific recognition reagents which can also be used for classification of biological samples, and to characterize their sources.
    Type: Grant
    Filed: September 1, 2000
    Date of Patent: July 9, 2002
    Assignee: Affymetrix, Inc.
    Inventors: Michael C. Pirrung, Lubert Stryer, Stephen P. A. Fodor, J. Leighton Read
  • Publication number: 20020076832
    Abstract: The present invention relates, in general, to a method of attaching a biopolymer to a solid support and, in particular, to a method of attaching a nucleic acid to a glass surface, and to reagents suitable for use in such a method. The invention further relates to the product produced by the present method and to kits comprising same.
    Type: Application
    Filed: June 4, 2001
    Publication date: June 20, 2002
    Inventors: Michael C. Pirrung, Amy L. Odenbaugh, Richard V. Connors, Janice D. Worden
  • Patent number: 6406844
    Abstract: A method and apparatus for preparation of a substrate containing a plurality of sequences. Photoremovable groups are attached to a surface of a substrate. Selected regions of the substrate are exposed to light so as to activate the selected areas. A monomer, also containing a photoremovable group, is provided to the substrate to bind at the selected areas. The process is repeated using a variety of monomers such as amino acids until sequences of a desired length are obtained. Detection methods and apparatus are also disclosed.
    Type: Grant
    Filed: June 1, 1995
    Date of Patent: June 18, 2002
    Assignee: Affymetrix, Inc.
    Inventors: Michael C. Pirrung, J. Leighton Read, Stephen P. A. Fodor, Lubert Stryer