Abstract: The specification relates to an intelligent resource management system. The system is capable of receiving a job script file requesting to run analyses for a data file on a multi-CPU system using a multi-threaded application. The system then builds an application knowledge structure and an intelligent resource mapping table based on the application knowledge structure with the intelligent resource mapping table requesting a number of CPUs needed for the analysis. The data file can be partitioned into a number of data segments equaling to the number of CPUs needed for the analysis and a number of application instances equal to the number of CPUs needed for the analysis can be created. The multi-threaded applications are executed on a plurality of CPUs for each bio-informatics data segment and resultants are obtained for each execution. These resultants are combined in the same order of data partitioning to obtain analysis.

Abstract: A method of mapping processes to processors in a parallel computing environment where a parallel application is to be run on a cluster of nodes wherein at least one of the nodes has multiple processors sharing a common memory, the method comprising using compiler based communication analysis to map Message Passing Interface processes to processors on the nodes, whereby at least some more heavily communicating processes are mapped to processors within nodes. Other methods, apparatus, and computer readable media are also provided.

Abstract: A method of mapping processes to processors in a parallel computing environment where a parallel application is to be run on a cluster of nodes wherein at least one of the nodes has multiple processors sharing a common memory, the method comprising using compiler based communication analysis to map Message Passing Interface processes to processors on the nodes, whereby at least some more heavily communicating processes are mapped to processors within nodes. Other methods, apparatus, and computer readable media are also provided.

Abstract: A method of mapping processes to processors in a parallel computing environment where a parallel application is to be run on a cluster of nodes wherein at least one of the nodes has multiple processors sharing a common memory, the method comprising using compiler based communication analysis to map Message Passing Interface processes to processors on the nodes, whereby at least some more heavily communicating processes are mapped to processors within nodes. Other methods, apparatus, and computer readable media are also provided.

Abstract: A method of mapping processes to processors in a parallel computing environment where a parallel application is to be run on a cluster of nodes wherein at least one of the nodes has multiple processors sharing a common memory, the method comprising using compiler based communication analysis to map Message Passing Interface processes to processors on the nodes, whereby at least some more heavily communicating processes are mapped to processors within nodes. Other methods, apparatus, and computer readable media are also provided.

Abstract: A method of mapping processes to processors in a parallel computing environment where a parallel application is to be run on a cluster of nodes wherein at least one of the nodes has multiple processors sharing a common memory, the method comprising using compiler based communication analysis to map Message Passing Interface processes to processors on the nodes, whereby at least some more heavily communicating processes are mapped to processors within nodes. Other methods, apparatus, and computer readable media are also provided.

Abstract: A method of mapping processes to processors in a parallel computing environment where a parallel application is to be run on a cluster of nodes wherein at least one of the nodes has multiple processors sharing a common memory, the method comprising using compiler based communication analysis to map Message Passing Interface processes to processors on the nodes, whereby at least some more heavily communicating processes are mapped to processors within nodes. Other methods, apparatus, and computer readable media are also provided.