Patents by Inventor Nickolai Alexandrov

Nickolai Alexandrov has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20200048653
    Abstract: Methods and materials for modulating low-nitrogen tolerance levels in plants are disclosed. For example, nucleic acids encoding low nitrogen tolerance-modulating polypeptides are disclosed as well as methods for using such nucleic acids to transform plant cells. Also disclosed are plants having increased low-nitrogen tolerance levels and plant products produced from plants having increased low-nitrogen tolerance levels.
    Type: Application
    Filed: August 26, 2019
    Publication date: February 13, 2020
    Inventors: Gregory Nadzan, Richard Schneeberger, Han Suk Kim, David Van-Dinh Dang, Kenneth A. Feldmann, Roger Pennell, Shing Kwok, Hongyu Zhang, Cory Christensen, Jack Okamuro, Fasong Zhou, Wuyi Wang, Emilio Margolles-Clark, Gerard Magpantay, Julissa Sosa, Nestor Apuya, Kerstin Piccolo, Bonnie Hund, Nickolai Alexandrov, Vyacheslav Brover, Peter Mascia
  • Patent number: 10482992
    Abstract: This document describes, among other things, a computer-implemented method for displaying and analyzing sequenced genome data. The method can include obtaining, at a computing system, genomic data for a plurality of organisms. A graphical representation can of the genomic data can be generated by the computing system based at least on the genomic data for the plurality of organisms, and the graphical representation can include a plurality of tracks that are arranged to show one or more features of the genomic data for different ones of the plurality of organisms. The graphical representation can be output for display by the computing system.
    Type: Grant
    Filed: January 8, 2016
    Date of Patent: November 19, 2019
    Assignee: CERES, INC.
    Inventors: Maxim Troukhan, Stanislav Freidin, Nickolai Alexandrov, Timothy Swaller
  • Patent number: 10428344
    Abstract: Methods and materials for modulating low-nitrogen tolerance levels in plants are disclosed. For example, nucleic acids encoding low nitrogen tolerance-modulating polypeptides are disclosed as well as methods for using such nucleic acids to transform plant cells. Also disclosed are plants having increased low-nitrogen tolerance levels and plant products produced from plants having increased low-nitrogen tolerance levels.
    Type: Grant
    Filed: February 20, 2015
    Date of Patent: October 1, 2019
    Assignee: CERES, INC.
    Inventors: Gregory Nadzan, Richard Schneeberger, Han Suk Kim, David Van-dinh Dang, Kenneth A. Feldmann, Roger Pennell, Shing Kwok, Hongyu Zhang, Cory Christensen, Jack Okamuro, Fasong Zhou, Wuyi Wang, Emilio Margolles-Clark, Gerard Magpantay, Julissa Sosa, Nestor Apuya, Kerstin Piccolo, Bonnie Hund, Nickolai Alexandrov, Vyacheslav Brover, Peter Mascia
  • Patent number: 10329575
    Abstract: The present invention provides DNA molecules as shown in SEQ ID NO:2199 that constitute fragments of the genome of a plant. The DNA molecules are useful for specifying a gene product in cells as regulatory sequences. One of ordinary skill in the art, having this data, can obtain cloned DNA fragments, synthetic DNA fragments or polypeptides constituting desired sequences by recombinant methodology known in the art or described therein.
    Type: Grant
    Filed: May 11, 2015
    Date of Patent: June 25, 2019
    Assignee: CERES, INC.
    Inventors: Nickolai Alexandrov, Shing Kwok, Peter Mascia, Jack Okamuro, Roger Pennell, Richard Schneeberger, Tatiana Tatarinova, Wayne Volkmuth, Nestor Apuya, Vyacheslav Brover, Jean-Baptiste Dumas, Yiwen Fang, Kenneth A. Feldmann, Diane K. Jofuku, Edward A. Kiegle, Bill Kimmerly
  • Publication number: 20180312836
    Abstract: The present invention is directed to promoter sequences and promoter control elements, polynucleotide constructs comprising the promoters and control elements, and methods of identifying the promoters, control elements, or fragments thereof. The invention further relates to the use of the present promoters or promoter control elements to modulate transcript levels.
    Type: Application
    Filed: April 30, 2018
    Publication date: November 1, 2018
    Inventors: Zhihong Cook, Yiwen Fang, Kenneth A. Feldmann, Edward Kiegle, Shing Kwok, Yu-Ping Lu, Leonard Medrano, Roger Pennell, Richard Schneeberger, Chuan-Yin Wu, Nestor Apuya, Jack K. Okamuro, Diane K. Jofuku, Jonathan Donson, David Van-Dinh Dang, Emilio Margolles-Clark, Nickolai Alexandrov, Tatiana Tatarinova, Noah Theiss, Danielle Grizard, Shawna Davis, Dennis Robles, Michael Portereiko
  • Patent number: 10106586
    Abstract: The present invention provides DNA molecules that constitute fragments of the genome of a plant, and polypeptides encoded thereby. The DNA molecules are useful for specifying a gene product in cells, either as a promoter or as a protein coding sequence or as an UTR or as a 3? termination sequence, and are also useful in controlling the behavior of a gene in the chromosome, in controlling the expression of a gene or as tools for genetic mapping, recognizing or isolating identical or related DNA fragments, or identification of a particular individual organism, or for clustering of a group of organisms with a common trait.
    Type: Grant
    Filed: June 23, 2015
    Date of Patent: October 23, 2018
    Assignee: Ceres, Inc.
    Inventors: Nickolai Alexandrov, Vyacheslav Brover, Kenneth Feldmann
  • Publication number: 20180237794
    Abstract: The present invention provides DNA molecules that constitute fragments of the genome of a plant, and polypeptides encoded thereby. The DNA molecules are useful for specifying a gene product in cells, either as a promoter or as a protein coding sequence or as an UTR or as a 3? termination sequence, and are also useful in controlling the behavior of a gene in the chromosome, in controlling the expression of a gene or as tools for genetic mapping, recognizing or isolating identical or related DNA fragments, or identification of a particular individual organism, or for clustering of a group of organisms with a common trait.
    Type: Application
    Filed: January 22, 2018
    Publication date: August 23, 2018
    Inventors: Nickolai ALEXANDROV, Vyacheslav BROVER, Kenneth A. FELDMANN, Vladimir MAKAROV, Timothy J. SWALLER, Gregory NADZAN, Peter MASCIA, Maxim TROUKHAN, Joel RARANG, James BURNS, Kyle VOS STRACHE
  • Publication number: 20180223303
    Abstract: The present invention provides DNA molecules that constitute fragments of the genome of a plant, and polypeptides encoded thereby. The DNA molecules are useful for specifying a gene product in cells, either as a promoter or as a protein coding sequence or as an UTR or as a 3? termination sequence, and are also useful in controlling the behavior of a gene in the chromosome, in controlling the expression of a gene or as tools for genetic mapping, recognizing or isolating identical or related DNA fragments, or identification of a particular individual organism, or for clustering of a group of organisms with a common trait. One of ordinary skill in the art, having this data, can obtain cloned DNA fragments, synthetic DNA fragments or polypeptides constituting desired sequences by recombinant methodology known in the art or described herein.
    Type: Application
    Filed: September 15, 2017
    Publication date: August 9, 2018
    Inventors: Nickolai Alexandrov, Nestor Apuya, Vyacheslav Brover, Xianfeng Chen, Jean-Baptiste Dumas, Yiwen Fang, Kenneth Feldmann, Peter Mascia, Jack Okamuro, Roger Pennell, Richard Schneeberger, Gopalakrishnan Subramanian, Maxim Troukhan, Liansheng Zheng, Edward Kiegle, Diane Jofuku Okamuro, William J. Kimmerly, Shing Kwok
  • Publication number: 20180119159
    Abstract: The present invention is directed to promoter sequences and promoter control elements, polynucleotide constructs comprising the promoters and control elements, and methods of identifying the promoters, control elements, or fragments thereof. The invention further relates to the use of the present promoters or promoter control elements to modulate transcript levels in plants, and plants containing such promoters or promoter control elements.
    Type: Application
    Filed: August 30, 2017
    Publication date: May 3, 2018
    Inventors: Richard SCHNEEBERGER, Emilio MARGOLLES-CLARK, Tatiana TATARINOVA, Yiwen FANG, Nickolai ALEXANDROV, Leonard MEDRANO, Roger PENNELL, Noah THEISS, Danielle GRIZARD, Shauna J. DAVIS, Dennis ROBLES, Michael PORTEREIKO
  • Publication number: 20180105829
    Abstract: Methods and materials for modulating low-nitrogen tolerance levels in plants are disclosed. For example, nucleic acids encoding low nitrogen tolerance-modulating polypeptides are disclosed as well as methods for using such nucleic acids to transform plant cells. Also disclosed are plants having increased[RCL2] low-nitrogen tolerance levels and plant products produced from plants having increased low-nitrogen tolerance levels.
    Type: Application
    Filed: August 29, 2017
    Publication date: April 19, 2018
    Inventors: Gregory NADZAN, Richard SCHNEEBERGER, Han Suk KIM, David Van-dinh DANG, Kenneth A. FELDMANN, Roger PENNELL, Shing KWOK, Hongyu ZHANG, Cory CHRISTENSEN, Jack OKAMURO, Fasong ZHOU, Wuyi WANG, Emilio MARGOLLES-CLARK, Gerard MAGPANTAY, Julissa SOSA, Nestor APUYA, Kerstin PICCOLO, Bonnie HUND, Nickolai ALEXANDROV, Vyacheslav BROVER, Peter MASCIA
  • Patent number: 9920328
    Abstract: The present invention provides DNA molecules that constitute fragments of the genome of a plant, and polypeptides encoded thereby. The DNA molecules are useful for specifying a gene product in cells, either as a promoter or as a protein coding sequence or as an UTR or as a 3? termination sequence, and are also useful in controlling the behavior of a gene in the chromosome, in controlling the expression of a gene or as tools for genetic mapping, recognizing or isolating identical or related DNA fragments, or identification of a particular individual organism, or for clustering of a group of organisms with a common trait.
    Type: Grant
    Filed: September 28, 2012
    Date of Patent: March 20, 2018
    Assignee: Ceres, Inc.
    Inventors: Nickolai Alexandrov, Vyacheslav Brover, Kenneth A. Feldmann, Vladimir Makarov, Timothy J. Swaller, Gregory Nadzan, Peter Mascia, Maxim Troukhan, Joel Rarang, James Burns, Kyle Vos Strache
  • Patent number: 9914935
    Abstract: The present invention relates to isolated nucleic acid molecules and their corresponding encoded polypeptides able confer the trait of modulated plant size, vegetative growth, organ number, plant architecture, growth rate, seedling vigor, growth rate, fruit and seed yield, tillering and/or biomass in plants. The present invention further relates to the use of these nucleic acid molecules and polypeptides in making transgenic plants, plant cells, plant materials or seeds of a plant having plant size, vegetative growth, organ number, plant architecture, growth rate, seedling vigor and/or biomass that are altered with respect to wild type plants grown under similar conditions.
    Type: Grant
    Filed: October 25, 2010
    Date of Patent: March 13, 2018
    Assignee: Ceres, Inc.
    Inventors: Nickolai Alexandrov, Vyacheslav Brover, Peter Mascia, Kenneth Feldmann, Cory Christensen, Greg Nadzan
  • Patent number: 9896693
    Abstract: The present document is directed to promoter sequences and promoter control elements, polynucleotide constructs comprising the promoters and control elements, and methods of identifying the promoters, control elements, or fragments thereof. The document further relates to the use of such promoters or promoter control elements to modulate transcript levels in plants, and plants containing such promoters or promoter control elements.
    Type: Grant
    Filed: October 8, 2013
    Date of Patent: February 20, 2018
    Assignee: Cres, Inc.
    Inventors: Michael F. Portereiko, Nickolai Alexandrov
  • Patent number: 9777287
    Abstract: Methods and materials for modulating low-nitrogen tolerance levels in plants are disclosed. For example, nucleic acids encoding low nitrogen tolerance-modulating polypeptides are disclosed as well as methods for using such nucleic acids to transform plant cells. Also disclosed are plants having increased[RCL2] low-nitrogen tolerance levels and plant products produced from plants having increased low-nitrogen tolerance levels.
    Type: Grant
    Filed: October 4, 2012
    Date of Patent: October 3, 2017
    Assignee: Ceres, Inc.
    Inventors: Gregory Nadzan, Richard Schneeberger, Han Suk Kim, David Van-dinh Dang, Kenneth A. Feldmann, Roger Pennell, Shing Kwok, Hongyu Zhang, Cory Christensen, Jack Okamuro, Fasong Zhou, Wuyi Wang, Emilio Margolles-Clark, Gerard Magpantay, Julissa Sosa, Nestor Apuya, Kerstin Piccolo, Bonnie Hund, Nickolai Alexandrov, Vyacheslav Brover, Peter Mascia
  • Patent number: 9777285
    Abstract: The present invention is directed to promoter sequences and promoter control elements, polynucleotide constructs comprising the promoters and control elements, and methods of identifying the promoters, control elements, or fragments thereof. The invention further relates to the use of the present promoters or promoter control elements to modulate transcript levels in plants, and plants containing such promoters or promoter control elements.
    Type: Grant
    Filed: September 3, 2014
    Date of Patent: October 3, 2017
    Assignee: Ceres, Inc.
    Inventors: Richard Schneeberger, Emilio Margolles-Clark, Tatiana Tatarinova, Yiwen Fang, Nickolai Alexandrov, Leonard Medrano, Roger Pennell, Noah Theiss, Danielle Grizard, Shauna J. Davis, Dennis Robles, Michael Portereiko
  • Publication number: 20170037426
    Abstract: The present invention provides DNA molecules that constitute fragments of the genome of a plant, and polypeptides encoded thereby. The DNA molecules are useful for specifying a gene product in cells, either as a promoter or as a protein coding sequence or as an UTR or as a 3? termination sequence, and are also useful in controlling the behavior of a gene in the chromosome, in controlling the expression of a gene or as tools for genetic mapping, recognizing or isolating identical or related DNA fragments, or identification of a particular individual organism, or for clustering of a group of organisms with a common trait. One of ordinary skill in the art, having this data, can obtain cloned DNA fragments, synthetic DNA fragments or polypeptides constituting desired sequences by recombinant methodology known in the art or described herein.
    Type: Application
    Filed: December 6, 2004
    Publication date: February 9, 2017
    Inventors: Nickolai Alexandrov, Nestor Apuya, Vyacheslav Brover, Xianfeng Chen, Jean-Baptiste Dumas, Yiwen Fang, Kenneth Feldmann, Peter Mascia, Jack Okamuro, Roger Pennell, Richard Schneeberger, Gopalakrishnan Subramanian, Maxim Troukhan, Liansheng Zheng, Edward Kiegle, Diane Jofuku Okamuro, William J. Kimmerly, Shing Kwok
  • Publication number: 20170037422
    Abstract: The present invention provides DNA molecules that constitute fragments of the genome of a plant, and polypeptides encoded thereby. The DNA molecules are useful for specifying a gene product in cells, either as a promoter or as a protein coding sequence or as an UTR or as a 3? termination sequence, and are also useful in controlling the behavior of a gene in the chromosome, in controlling the expression of a gene or as tools for genetic mapping, recognizing or isolating identical or related DNA fragments, or identification of a particular individual organism, or for clustering of a group of organisms with a common trait.
    Type: Application
    Filed: September 28, 2012
    Publication date: February 9, 2017
    Inventors: Nickolai ALEXANDROV, Vyacheslav BROVER, Kenneth A. FELDMANN, Vladimir MAKAROV, Timothy J. SWALLER, Gregory NADZAN, Peter MASCIA, Maxim TROUKHAN, Joel RARANG, James BURNS, Kyle VOS STRACHE
  • Patent number: 9562236
    Abstract: This document provides methods and materials related to transcription terminators. For example, methods and materials related to transcription terminators and nucleic acid molecules (e.g., vectors and constructs) that contain a nucleic acid sequence that encodes a polypeptide operably linked to a transcription terminator are provided. In addition, plants, plant cells, and plant seeds having a nucleic acid sequence that encodes a polypeptide operably linked to a transcription terminator are provided.
    Type: Grant
    Filed: August 10, 2012
    Date of Patent: February 7, 2017
    Assignee: Ceres, Inc.
    Inventors: Delin Liang, Nickolai Alexandrov, Yu-Ping Lu
  • Publication number: 20160369294
    Abstract: Methods and materials for modulating low-nitrogen tolerance levels in plants are disclosed. For example, nucleic acids encoding low nitrogen tolerance-modulating polypeptides are disclosed as well as methods for using such nucleic acids to transform plant cells. Also disclosed are plants having increased[RCL2] low-nitrogen tolerance levels and plant products produced from plants having increased low-nitrogen tolerance levels.
    Type: Application
    Filed: October 4, 2012
    Publication date: December 22, 2016
    Applicant: CERES, INC.
    Inventors: Gregory NADZAN, Richard SCHNEEBERGER, Han Suk KIM, David Van-dinh DANG, Kenneth A. FELDMANN, Roger PENNELL, Shing KWOK, Hongyu ZHANG, Cory CHRISTENSEN, Jack OKAMURO, Fasong ZHOU, Wuyi WANG, Emilio MARGOLLES-CLARK, Gerard MAGPANTAY, Julissa SOSA, Nestor APUYA, Kerstin PICCOLO, Bonnie HUND, Nickolai ALEXANDROV, Vyacheslav BROVER, Peter MASCIA
  • Publication number: 20160203195
    Abstract: This document describes, among other things, a computer-implemented method for displaying and analyzing sequenced genome data. The method can include obtaining, at a computing system, genomic data for a plurality of organisms. A graphical representation can of the genomic data can be generated by the computing system based at least on the genomic data for the plurality of organisms, and the graphical representation can include a plurality of tracks that are arranged to show one or more features of the genomic data for different ones of the plurality of organisms. The graphical representation can be output for display by the computing system.
    Type: Application
    Filed: January 8, 2016
    Publication date: July 14, 2016
    Inventors: Maxim Troukhan, Stanislav Freiden, Nickolai Alexandrov, Timothy Swaller