Patents by Inventor Paul A. Fitzpatrick

Paul A. Fitzpatrick has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20130039898
    Abstract: Provided herein are phenylalanine ammonia-lyase (PAL) variants produced by prokaryotes, wherein such prokaryotic PAL variant has a greater phenylalanine-converting activity and/or a reduced immunogenicity as compared to a wild-type PAL. Further provided are compositions of prokaryotic PAL and biologically active fragments, mutants, variants or analogs thereof, as well as methods for the production, purification, formulation, and use of such compositions for industrial and therapeutic purposes, e.g., treating hyperphenylalaninemia, including phenylketonuria, and other disorders, including cancer.
    Type: Application
    Filed: February 3, 2011
    Publication date: February 14, 2013
    Applicant: BIOMARIN PHARMACEUTICAL INC.
    Inventors: Augustus O. Okhamafe, Sean M. Bell, G. Nick Zecherle, Kris Antonsen, Yanhong Zhang, Kieu Ly Tran, Paul A. Fitzpatrick, Emil D. Kakkis, Michel Claude Vellard, Daniel J. Wendt, Mubarack Muthalif
  • Publication number: 20120142099
    Abstract: The present invention provides polynucleotide sequences (bbp) encoding a Bak Binding Protein (BBP) and fragments thereof that bind to Bak. The invention also provides a BBP which binds to Bak. The invention also provides recombinant host cells containing polynucleotides encoding BBP. The invention further provides antibodies that specifically bind to BBP. The invention further provides methods for detecting agents such as drugs that alter the binding of a BBP with a Bak protein. The invention further provides methods for detecting the presence of bbp or BBP in a biological sample, and further provides methods for modulating the levels of BBP in a cell. This invention additionally encompasses novel peptides, designated the “BBP Binding Domains” and the respective nucleotides, designated “bbpbd-1” and “bbpbd-2” which are involved in the interaction between Bak and BBP.
    Type: Application
    Filed: January 19, 2011
    Publication date: June 7, 2012
    Applicant: GENENTECH, INC.
    Inventors: Michael C. Kiefer, Paul A. Fitzpatrick, Helen L. Gibson, Philip J. Barr
  • Patent number: 7888038
    Abstract: The present invention provide polynucleotide sequences encoding a Bak Binding Protein (BBP) and fragments thereof that bind to Bak. The invention also provide recombinant host cells containing polynucleotides encoding BBP. The invention further provide antibodies that specifically bind to BBP. The invention further provide methods for detecting agents such as drugs that alter the binding of a BBP with a Bak protein. The invention further provide methods for detecting the presence of Bak polynucleotides and the encoding proteins in a biological sample, and further provide methods for modulating the levels of BBP in a cell. This invention additionally encompasses novel peptides, designated the “BBP Binding Domains” and the respective nucleotides, designated “bbpbd-1” and “bbpbd-2” which are involved in the interaction between Bak and BBP.
    Type: Grant
    Filed: October 9, 2006
    Date of Patent: February 15, 2011
    Assignee: Genetech, Inc.
    Inventors: Michael C. Kiefer, Paul A. Fitzpatrick, Helen L. Gibson, Philip J. Barr
  • Publication number: 20100278802
    Abstract: The present invention is directed to phenylalanine ammonia-lyase (PAL) variants produced by prokaryotes, wherein such prokaryotic PAL variant has a greater phenylalanine-converting activity and/or a reduced immunogenicity as compared to a wild-type PAL. The invention provides compositions of prokaryotic PAL and biologically active fragments, mutants, variants or analogs thereof, as well as methods for the production, purification, and use of such compositions for therapeutic purposes, including the treatment of cancer.
    Type: Application
    Filed: July 9, 2010
    Publication date: November 4, 2010
    Applicant: BioMarin Pharmaceutical Inc.
    Inventors: Emil D. KAKKIS, Paul A. Fitzpatrick, Daniel J. Wendt, Sean M. Bell, Augustus O. Okhamafe
  • Patent number: 7790433
    Abstract: The present invention is directed to phenylalanine ammonia-lyase (PAL) variants produced by prokaryotes, wherein such prokaryotic PAL variant has a greater phenylalanine-converting activity and/or a reduced immunogenicity as compared to a wild-type PAL. The invention provides compositions of prokaryotic PAL and biologically active fragments, mutants, variants or analogs thereof, as well as methods for the production, purification, and use of such compositions for therapeutic purposes, including the treatment of cancer.
    Type: Grant
    Filed: April 9, 2009
    Date of Patent: September 7, 2010
    Assignee: BioMarin Pharmaceutical Inc.
    Inventors: Emil D. Kakkis, Paul A. Fitzpatrick, Daniel J. Wendt, Sean M. Bell, Augustus O. Okhamafe
  • Publication number: 20090263369
    Abstract: The present invention is directed to phenylalanine ammonia-lyase (PAL) variants produced by prokaryotes, wherein such prokaryotic PAL variant has a greater phenylalanine-converting activity and/or a reduced immunogenicity as compared to a wild-type PAL. The invention provides compositions of prokaryotic PAL and biologically active fragments, mutants, variants or analogs thereof, as well as methods for the production, purification, and use of such compositions for therapeutic purposes, including the treatment of cancer.
    Type: Application
    Filed: April 9, 2009
    Publication date: October 22, 2009
    Applicant: BIOMARIN PHARMACEUTICAL INC.
    Inventors: EMIL D. KAKKIS, PAUL A. FITZPATRICK, DANIEL J. WENDT, SEAN M. BELL, AUGUSTUS O. OKHAMAFE
  • Patent number: 7553653
    Abstract: The present invention pertains to the use of the protein phenylalanine ammonia-lyase, as well as the biologically-active derivatives of the said protein for preventing or treating diseases associated with a phenylalanine imbalance in a human or animal body. More particularly, the present invention relates to the therapeutic use of the above-cited molecules for preventing or treating a phenylalanine imbalance in vivo. This invention also deals with therapeutic compositions comprising a pharmaceutically active amount of the above-described therapeutic molecules as well as with therapeutic methods using the said therapeutic compositions. Finally, the present invention relates to processes for selecting more therapeutically-effective variants of said protein as well as to the selected variants themselves.
    Type: Grant
    Filed: September 19, 2005
    Date of Patent: June 30, 2009
    Assignees: BioMarin Pharmaceutical Inc., The Scripps Research Institute
    Inventors: Emilio Kakkis, Daniel Oppenheimer, Paul Fitzpatrick, Robert Heft, Alejandra Gamez, Lin Wang, Woomi Kim, Mary Straub, Marianne Patch, Raymond C. Stevens
  • Patent number: 7537923
    Abstract: The present invention is directed to phenylalanine ammonia-lyase (PAL) variants produced by prokaryotes, wherein such prokaryotic PAL variant has a greater phenylalanine-converting activity and/or a reduced immunogenicity as compared to a wild-type PAL. The invention provides compositions of prokaryotic PAL and biologically active fragments, mutants, variants or analogs thereof, as well as methods for the production, purification, and use of such compositions for therapeutic purposes, including the treatment of cancer.
    Type: Grant
    Filed: April 22, 2008
    Date of Patent: May 26, 2009
    Assignee: BioMarin Pharmaceutical Inc.
    Inventors: Emil D. Kakkis, Paul A. Fitzpatrick, Daniel J. Wendt, Sean M. Bell, Augustus O. Okhamafe
  • Publication number: 20090047265
    Abstract: The present invention is directed to phenylalanine ammonia-lyase (PAL) variants produced by prokaryotes, wherein such prokaryotic PAL variant has a greater phenylalanine-converting activity and/or a reduced immunogenicity as compared to a wild-type PAL. The invention provides compositions of prokaryotic PAL and biologically active fragments, mutants, variants or analogs thereof, as well as methods for the production, purification, and use of such compositions for therapeutic purposes, including the treatment of cancer.
    Type: Application
    Filed: April 22, 2008
    Publication date: February 19, 2009
    Applicant: BioMarin Pharmaceutical Inc.
    Inventors: Emil D. Kakkis, Paul A. Fitzpatrick, Daniel J. Wendt, Bell M. Sean, Augustus O. Okhamafe
  • Publication number: 20080260715
    Abstract: The present invention provides a highly purified recombinant human precursor N-acetylgalactosamine-4-sulfatase and biologically active mutants, fragments and analogs thereof as well as pharmaceutical formulations comprising highly purified recombinant human precursor N-acetylgalactosamine-4-sulfatase. The invention also provides methods for treating diseases caused all or in part by deficiencies in human N-acetylgalactosamine-4-sulfatase including MPS VI and methods for producing and purifying the recombinant precursor enzyme to a highly purified form.
    Type: Application
    Filed: May 18, 2007
    Publication date: October 23, 2008
    Applicant: BIOMARIN PHARMACEUTICAL INC.
    Inventors: Minmin Qin, Gary N. Zecherle, Wai-Pan Chan, Paul A. Fitzpatrick, Stuart Swiedler, John M. Henstrand, Dan J. Wendt, Lin Chen, Christopher M. Starr
  • Publication number: 20080008695
    Abstract: The present invention is directed to phenylalanine ammonia-lyase (PAL) produced by prokaryotes, wherein such prokaryotic PAL wherein the PAL variant has a greater phenylalanine-converting activity and/or a reduced immunogenicity as compared to a wild-type PAL. The invention thus provides compositions of bacterial PAL and biologically active fragments, mutants, variants and analogs thereof, as well as methods for the production, purification, and use of such compositions for therapeutic and industrial purposes.
    Type: Application
    Filed: May 25, 2007
    Publication date: January 10, 2008
    Inventors: Michel Vellard, Paul Fitzpatrick, Emil Kakkis, Daniel Wendt
  • Patent number: 7316915
    Abstract: The present invention provides polynucleotide sequences (bbp) encoding a Bak Binding Protein (BBP) and fragments thereof that bind to Bak. The invention also provides a BBP which binds to Bak. The invention also provides recombinant host cells containing polynucleotides encoding BBP. The invention further provides antibodies that specifically bind to BBP. The invention further provides methods for detecting agents such as drugs that alter the binding of a BBP with a Bak protein. The invention further provides methods for detecting the presence of bbp or BBP in a biological sample, and further provides methods for modulating the levels of BBP in a cell. This invention additionally encompasses novel peptides, designated the “BBP Binding Domains” and the respective nucleotides, designated “bbpbd-1” and “bbpbd-2” which are involved in the interaction between Bak and BBP.
    Type: Grant
    Filed: July 1, 2002
    Date of Patent: January 8, 2008
    Assignee: Tanox, Inc.
    Inventors: Michael C. Kiefer, Paul A. Fitzpatrick, Helen L. Gibson, Philip J. Barr
  • Publication number: 20070099215
    Abstract: The present invention provides polynucleotide sequences (bbp) encoding a Bak Binding Protein (BBP) and fragments thereof that bind to Bak. The invention also provides a BBP which binds to Bak. The invention also provides recombinant host cells containing polynucleotides encoding BBP. The invention further provides antibodies that specifically bind to BBP. The invention further provides methods for detecting agents such as drugs that alter the binding of a BBP with a Bak protein. The invention further provides methods for detecting the presence of bbp or BBP in a biological sample, and further provides methods for modulating the levels of BBP in a cell. This invention additionally encompasses novel peptides, designated the “BBP Binding Domains” and the respective nucleotides, designated “bbpbd-1” and “bbpbd-2” which are involved in the interaction between Bak and BBP.
    Type: Application
    Filed: October 9, 2006
    Publication date: May 3, 2007
    Applicant: TANOX INC.
    Inventors: Michael Kiefer, Paul Fitzpatrick, Helen Gibson, Philip Barr
  • Publication number: 20070048855
    Abstract: The present invention pertains to the use of the protein phenylalanine ammonia-lyase, as well as the biologically-active derivatives of the said protein for preventing or treating diseases associated with a phenylalanine imbalance in a human or animal body. More particularly, the present invention relates to the therapeutic use of the above-cited molecules for preventing or treating a phenylalanine imbalance in vivo. This invention also deals with therapeutic compositions comprising a pharmaceutically active amount of the above-described therapeutic molecules as well as with therapeutic methods using the said therapeutic compositions. Finally, the present invention relates to processes for selecting more therapeutically-effective variants of said protein as well as to the selected variants themselves.
    Type: Application
    Filed: September 19, 2005
    Publication date: March 1, 2007
    Inventors: Alejandra Gamez, Lin Wang, Woomi Kim, Mary Straub, Marianne Patch, Emil Kakkis, Dan Oppenheimer, Paul Fitzpatrick, Robert Heft, Raymond Stevens
  • Publication number: 20060040348
    Abstract: The present invention provides a recombinant human ?-L-iduronidase and biologically active fragments and muteins thereof with a purity greater than 99%. The present invention further provides large-scale methods to produce and purify commercial grade recombinant human ?-L-iduronidase enzyme thereof.
    Type: Application
    Filed: November 24, 2003
    Publication date: February 23, 2006
    Inventors: Minmin Qin, Wai-Pan Chan, Lin Chen, Paul Fitzpatrick, John Henstrand, Dan Wendt, Gary Zecherle, Christopher Starr, Emil Kakkis
  • Publication number: 20050287133
    Abstract: The present invention provides a highly purified recombinant, human precursor N-acetylgalactosamine-4-sulfatase and biologically active mutants, fragments and analogs thereof as well as pharmaceutical formulations comprising highly purified recombinant human precursor N-acetylgalactosamine-4-sulfatase. The invention also provides methods for treating diseases caused all or in part by deficiencies in human N-acetylgalactosamine-4-sulfatase including MPS VI and methods for producing and purifying the recombinant precursor enzyme to a highly purified form.
    Type: Application
    Filed: May 23, 2005
    Publication date: December 29, 2005
    Applicant: BIOMARIN PHARMACEUTICAL INC.
    Inventors: Minmin Qin, Gary Zecherle, Wai-Pan Chan, Paul Fitzpatrick, Stuart Swiedler, John Henstrand, Dan Wendt, Lin Chen, Christopher Starr
  • Patent number: 6972124
    Abstract: The present invention provides a highly purified recombinant human precursor N-acetylgalactosamine-4-sulfatase and biologically active mutants, fragments and analogs thereof as well as pharmaceutical formulations comprising highly purified recombinant human precursor N-acetylgalactosamine-4-sulfatase. The invention also provides methods for treating diseases caused all or in part by deficiencies in human N-acetylgalactosamine-4-sulfatase including MPS VI and methods for producing and purifying the recombinant precursor enzyme to a highly purified form.
    Type: Grant
    Filed: November 7, 2003
    Date of Patent: December 6, 2005
    Assignee: BioMarin Pharmaceuticals Inc.
    Inventors: Minmin Qin, Gary N. Zecherle, Wai-Pan Chan, Paul A. Fitzpatrick, Stuart Sweidler, John M. Henstrand, Dan J. Wendt, Lin Chen, Christopher M. Starr
  • Patent number: 6866844
    Abstract: The present invention provides a highly purified recombinant human precursor N-acetylgalactosamine-4-sulfatase and biologically active mutants, fragments and analogs thereof as well as pharmaceutical formulations comprising highly purified recombinant human precursor N-acetylgalactosamine-4-sulfatase. The invention also provides methods for treating diseases caused all or in part by deficiencies in human N-acetylgalactosamine-4-sulfatase including MPS VI and methods for producing and purifying the recombinant precursor enzyme to a highly purified form.
    Type: Grant
    Filed: November 7, 2002
    Date of Patent: March 15, 2005
    Assignee: Biomarin Pharmaceutical Inc.
    Inventors: Minmin Qin, John M. Henstrand, Gary N. Zecherle, Dan J. Wendt, Wai-Pan Chan, Lin Chen, Paul A. Fitzpatrick, Christopher M. Starr
  • Publication number: 20040131605
    Abstract: The present invention provides a highly purified recombinant human precursor N-acetylgalactosamine-4-sulfatase and biologically active mutants, fragments and analogs thereof as well as pharmaceutical formulations comprising highly purified recombinant human precursor N-acetylgalactosamine-4-sulfatase. The invention also provides methods for treating diseases caused all or in part by deficiencies in human N-acetylgalactosamine-4-sulfatase including MPS VI and methods for producing and purifying the recombinant precursor enzyme to a highly purified form.
    Type: Application
    Filed: November 7, 2003
    Publication date: July 8, 2004
    Applicant: BIOMARIN PHARMACEUTICAL INC.
    Inventors: Minmin Qin, Gary N. Zecherle, Wai-Pan Chan, Paul A. Fitzpatrick, Stuart Sweidler, John M. Henstrand, Dan J. Wendt, Lin Chen, Christopher M. Starr
  • Publication number: 20040101524
    Abstract: The present invention provides a highly purified recombinant human precursor N-acetylgalactosamine-4-sulfatase and biologically active mutants, fragments and analogs thereof as well as pharmaceutical formulations comprising highly purified recombinant human precursor N-acetylgalactosamine-4-sulfatase. The invention also provides methods for treating diseases caused all or in part by deficiencies in human N-acetylgalactosamine-4-sulfatase including MPS VI and methods for producing and purifying the recombinant precursor enzyme to a highly purified form.
    Type: Application
    Filed: November 7, 2002
    Publication date: May 27, 2004
    Inventors: Minmin Qin, John M. Henstrand, Gary N. Zecherle, Dan J. Wendt, Wai-Pan Chan, Lin Chen, Paul A. Fitzpatrick, Christopher M. Starr