Patents by Inventor Peter Jan Leonard Mario Quaedflieg

Peter Jan Leonard Mario Quaedflieg has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Patent number: 10920258
    Abstract: A method for synthesizing a peptide having the sequence His-X-Glu-Gly-Thr-Phe-Thr-Ser-Asp-Val-Ser-Ser-Tyr-Leu-Glu-Gly-Gln-Ala-Ala-Y-Glu-Phe-Ile-Ala-Trp-Leu-Val-Z-Gly-Arg-Gly is disclosed. The method includes enzymatically coupling: (a) a peptide C-terminal ester or thioester having a first peptide fragment with the sequence His-X-Glu-Gly-Thr-Phe-Thr-Ser-Asp-Val-Ser-(thio)ester; and (b) a peptide nucleophile having an N-terminally unprotected amine having a second peptide fragment with the sequence H-Ser-Tyr-Leu-Glu-Gly-Gln-Ala-Ala-Y-Glu-Phe-Ile-Ala-Trp-Leu-Val-Z-Gly-Arg-Gly; wherein: X is Ala or an ?-amino-isobutyric acid (Aib) residue; Y is Lys, which Lys has a free side-chain ?-amino group or of which Lys the side-chain ?-amino group is protected with a protective group or of which Lys the side-chain ?-amino group is functionalized with an amino acid or another functional group; and Z is Arg or Lys.
    Type: Grant
    Filed: February 6, 2020
    Date of Patent: February 16, 2021
    Assignee: ENZYPEP B.V.
    Inventors: Timo Nuijens, Ana Toplak, Peter Jan Leonard Mario Quaedflieg
  • Patent number: 10883132
    Abstract: A method for synthesizing a peptide having the sequence His-X-Glu-Gly-Thr-Phe-Thr-Ser-Asp-Val-Ser-Ser-Tyr-Leu-Glu-Gly-Gln-Ala-Ala-Y-Glu-Phe-Ile-Ala-Trp-Leu-Val-Z-Gly-Arg-Gly is disclosed. The method includes enzymatically coupling: (a) a peptide C-terminal ester or thioester having a first peptide fragment with the sequence His-X-Glu-Gly-Thr-Phe-Thr-Ser-Asp-Val-Ser-(thio)ester; and (b) a peptide nucleophile having an N-terminally unprotected amine having a second peptide fragment with the sequence H-Ser-Tyr-Leu-Glu-Gly-Gln-Ala-Ala-Y-Glu-Phe-Ile-Ala-Trp-Leu-Val-Z-Gly-Arg-Gly; wherein: X is Ala or an ?-amino-isobutyric acid (Aib) residue; Y is Lys, which Lys has a free side-chain ?-amino group or of which Lys the side-chain ?-amino group is protected with a protective group or of which Lys the side-chain ?-amino group is functionalized with an amino acid or another functional group; and Z is Arg or Lys.
    Type: Grant
    Filed: March 11, 2019
    Date of Patent: January 5, 2021
    Assignee: ENZYPEP B.V.
    Inventors: Timo Nuijens, Ana Toplak, Peter Jan Leonard Mario Quaedflieg
  • Patent number: 10858414
    Abstract: The invention relates to a method for preparing a coupling product having the sequence Pq-Wv-His-X-Glu-Gly-Thr-Phe-Thr-Ser-Asp-Val-Ser-Ser-Tyr-Leu-Glu-Gly-Gln-Ala-Ala-Y-Glu-Phe-Ile-Ala-Trp-Leu-Val-Z-Gly-Arg-Gly.
    Type: Grant
    Filed: March 8, 2019
    Date of Patent: December 8, 2020
    Assignee: ENZYPEP B.V.
    Inventors: Timo Nuijens, Ana Toplak, Peter Jan Leonard Mario Quaedflieg
  • Publication number: 20200347427
    Abstract: A method for synthesizing a peptide having the sequence His-X-Glu-Gly-Thr-Phe-Thr-Ser-Asp-Val-Ser-Ser-Tyr-Leu-Glu-Gly-Gln-Ala-Ala-Y-Glu-Phe-Ile-Ala-Trp-Leu-Val-Z-Gly-Arg-Gly is disclosed. The method includes enzymatically coupling: (a) a peptide C-terminal ester or thioester having a first peptide fragment with the sequence His-X-Glu-Gly-Thr-Phe-Thr-Ser-Asp-Val-Ser-(thio)ester; and (b) a peptide nucleophile having an N-terminally unprotected amine having a second peptide fragment with the sequence H-Ser-Tyr-Leu-Glu-Gly-Gln-Ala-Ala-Y-Glu-Phe-Ile-Ala-Trp-Leu-Val-Z-Gly-Arg-Gly; wherein: X is Ala or an ?-amino-isobutyric acid (Aib) residue; Y is Lys, which Lys has a free side-chain ?-amino group or of which Lys the side-chain ?-amino group is protected with a protective group or of which Lys the side-chain ?-amino group is functionalized with an amino acid or another functional group; and Z is Arg or Lys.
    Type: Application
    Filed: February 6, 2020
    Publication date: November 5, 2020
    Applicant: ENZYPEP B.V.
    Inventors: Timo NUIJENS, Ana TOPLAK, Peter Jan Leonard Mario QUAEDFLIEG
  • Patent number: 10752931
    Abstract: The invention further relates to a process for the enzymatic synthesis of an (oligo)peptide. The invention relates to a method for designing an enzymatic synthesis process of an (oligo)peptide, comprising identifying two or more (oligo)peptide fragments of an (oligo)peptide, which fragments are (oligo)peptides suitable for preparing the (oligo)peptide by enzymatic condensation of the two or more peptide fragments using a ligase. The invention relates to a method for designing an enzymatic synthesis process of a cyclic (oligo)peptide, comprising identifying a non-cyclic (oligo)peptide from which the cyclic (oligo)peptide can be prepared by cyclisation, catalysed by a cyclase. The invention further relates to a process for the enzymatic synthesis of an (oligo)peptide.
    Type: Grant
    Filed: July 8, 2016
    Date of Patent: August 25, 2020
    Assignee: ENZYPEP B.V.
    Inventors: Timo Nuijens, Peter Jan Leonard Mario Quaedflieg
  • Publication number: 20200262886
    Abstract: The invention relates to a method for preparing a coupling product having the sequence Pq-Wv-His-X-Glu-Gly-Thr-Phe-Thr-Ser-Asp-Val-Ser-Ser-Tyr-Leu-Glu-Gly-Gln-Ala-Ala-Y-Glu-Phe-Ile-Ala-Trp-Leu-Val-Z-Gly-Arg-Gly.
    Type: Application
    Filed: March 8, 2019
    Publication date: August 20, 2020
    Applicant: ENZYPEP B.V.
    Inventors: Timo NUIJENS, Ana TOPLAK, Peter Jan Leonard Mario QUAEDFLIEG
  • Publication number: 20190345529
    Abstract: A method for synthesizing a peptide having the sequence His-X-Glu-Gly-Thr-Phe-Thr-Ser-Asp-Val-Ser-Ser-Tyr-Leu-Glu-Gly-Gln-Ala-Ala-Y-Glu-Phe-Ile-Ala-Trp-Leu-Val-Z-Gly-Arg-Gly is disclosed. The method includes enzymatically coupling: (a) a peptide C-terminal ester or thioester having a first peptide fragment with the sequence His-X-Glu-Gly-Thr-Phe-Thr-Ser-Asp-Val-Ser-(thio)ester; and (b) a peptide nucleophile having an N-terminally unprotected amine having a second peptide fragment with the sequence H-Ser-Tyr-Leu-Glu-Gly-Gln-Ala-Ala-Y-Glu-Phe-Ile-Ala-Trp-Leu-Val-Z-Gly-Arg-Gly; wherein: X is Ala or an ?-amino-isobutyric acid (Aib) residue; Y is Lys, which Lys has a free side-chain ?-amino group or of which Lys the side-chain ?-amino group is protected with a protective group or of which Lys the side-chain ?-amino group is functionalized with an amino acid or another functional group; and Z is Arg or Lys.
    Type: Application
    Filed: March 11, 2019
    Publication date: November 14, 2019
    Applicant: ENZYPEP B.V.
    Inventors: Timo NUIJENS, Ana TOPLAK, Peter Jan Leonard Mario QUAEDFLIEG
  • Patent number: 10336994
    Abstract: The invention relates to a subtilisin BPN? variant or homolog thereof, having the following mutations compared to subtilisin BPN? represented by SEQUENCE ID NO: 2 or a homolog sequence thereof:—a deletion of the amino acids corresponding to positions 75-83;—a mutation at the amino acid position corresponding to S221, the mutation corresponding to S221C or S221 selenocysteine, preferably S221C;—at least one further mutation selected from the group consisting of amino acid positions corresponding to F189W, F189Y, S33D, S33T, N218D, N218T, N218E, N62D, N62S, N62W, and N62Y; preferably a mutation at the amino acid position corresponding to P225; wherein the amino acid positions are defined according to the sequence of subtilisin BPN? represented by SEQUENCE ID NO: 2. The invention further relates to enzymatically synthesizing a peptide.
    Type: Grant
    Filed: November 16, 2018
    Date of Patent: July 2, 2019
    Assignee: ENZYPEP B.V.
    Inventors: Ana Toplak, Timo Nuijens, Peter Jan Leonard Mario Quaedflieg
  • Patent number: 10253061
    Abstract: The invention relates to a method for enzymatically synthesizing an (oligo)peptide, comprising coupling (a) an (oligo)peptide C-terminal ester or thioester and (b) an (oligo)peptide nucleophile having an N-terminally unprotected amine, wherein the coupling is carried out in a fluid comprising water, and wherein the coupling is catalyzed by a subtilisin BPN? variant or a homolog thereof, which comprises the following mutations compared to subtilisin BPN? represented by SEQUENCE ID NO: 2 or a homolog sequence thereof: a deletion of the amino acids corresponding to positions 75-83; a mutation at the amino acid position corresponding to S221, the mutation being S221C or S221 selenocysteine; preferably a mutation at the amino acid position corresponding to P225 wherein the amino acid positions are defined according to the sequence of subtilisin BPN? represented by SEQUENCE ID NO: 2. Further, the invention relates to an enzyme suitable for use as a catalyst in a method of the invention.
    Type: Grant
    Filed: October 17, 2018
    Date of Patent: April 9, 2019
    Assignee: ENZYPEP B.V.
    Inventors: Peter Jan Leonard Mario Quaedflieg, Timo Nuijens, Jan Metske Van Der Laan, Dirk Barend Janssen, Ana Toplak, Bian Wu
  • Publication number: 20190078069
    Abstract: The invention relates to a subtilisin BPN? variant or homologue thereof, having the following mutations compared to subtilisin BPN? represented by SEQUENCE ID NO: 2 or a homologue sequence thereof:—a deletion of the amino acids corresponding to positions 75-83;—a mutation at the amino acid position corresponding to S221, the mutation corresponding to S221C or S221 selenocysteine, preferably S221C;—at least one further mutation selected from the group consisting of amino acid positions corresponding to F189W, F189Y, S33D, S33T, N218D, N218T, N218E, N62D, N62S, N62W, and N62Y; preferably a mutation at the amino acid position corresponding to P225; wherein the amino acid positions are defined according to the sequence of subtilisin BPN? represented by SEQUENCE ID NO: 2. The invention further relates to enzymatically synthesizing a peptide.
    Type: Application
    Filed: November 16, 2018
    Publication date: March 14, 2019
    Inventors: Ana Toplak, Timo Nuijens, Peter Jan Leonard Mario Quaedflieg
  • Publication number: 20190031710
    Abstract: The invention relates to a method for enzymatically synthesizing an (oligo)peptide, comprising coupling (a) an (oligo)peptide C-terminal ester or thioester and (b) an (oligo)peptide nucleophile having an N-terminally unprotected amine, wherein the coupling is carried out in a fluid comprising water, and wherein the coupling is catalyzed by a subtilisin BPN? variant or a homologue thereof, which comprises the following mutations compared to subtilisin BPN? represented by SEQUENCE ID NO: 2 or a homologue sequence thereof : a deletion of the amino acids corresponding to positions 75-83; a mutation at the amino acid position corresponding to S221, the mutation being S221C or S221 selenocysteine; preferably a mutation at the amino acid position corresponding to P225 wherein the amino acid positions are defined according to the sequence of subtilisin BPN? represented by SEQUENCE ID NO: 2. Further, the invention relates to an enzyme suitable for use as a catalyst in a method of the invention.
    Type: Application
    Filed: October 17, 2018
    Publication date: January 31, 2019
    Inventors: Peter Jan Leonard Mario QUAEDFLIEG, Timo NUIJENS, Jan Metske VAN DER LAAN, Dirk Barend JANSSEN, Ana TOPLAK, Bian WU
  • Patent number: 10138268
    Abstract: The invention relates to a method for enzymatically synthesizing an (oligo)peptide, comprising coupling (a) an (oligo)peptide C-terminal ester or thioester and (b) an (oligo)peptide nucleophile having an N-terminally unprotected amine, wherein the coupling is carried out in a fluid comprising water, and wherein the coupling is catalyzed by a subtilisin BPN? variant or a homo-log thereof, which comprises the following mutations compared to subtilisin BPN? represented by SEQUENCE ID NO: 2 or a homolog sequence thereof: a deletion of the amino acids corresponding to positions 75-83; a mutation at the amino acid position corresponding to S221, the mutation being S221C or S221 selenocysteine; preferably a mutation at the amino acid position corresponding to P225 wherein the amino acid positions are defined according to the sequence of subtilisin BPN? represented by SEQUENCE ID NO: 2. Further, the invention relates to an enzyme suitable for use as a catalyst in a method of the invention.
    Type: Grant
    Filed: October 9, 2015
    Date of Patent: November 27, 2018
    Assignee: ENZYPEP B.V.
    Inventors: Peter Jan Leonard Mario Quaedflieg, Timo Nuijens, Jan Metske Van Der Laan, Dirk Barend Janssen, Ana Toplak, Bian Wu
  • Publication number: 20180187231
    Abstract: The invention further relates to a process for the enzymatic synthesis of an (oligo)peptide. The invention relates to a method for designing an enzymatic synthesis process of an (oligo)peptide, comprising identifying two or more (oligo)peptide fragments of an (oligo)peptide, which fragments are (oligo)peptides suitable for preparing the (oligo)peptide by enzymatic condensation of the two or more peptide fragments using a ligase. The invention relates to a method for designing an enzymatic synthesis process of a cyclic (oligo)peptide, comprising identifying a non-cyclic (oligo)peptide from which the cyclic (oligo)peptide can be prepared by cyclisation, catalysed by a cyclase. The invention further relates to a process for the enzymatic synthesis of an (oligo)peptide.
    Type: Application
    Filed: July 8, 2016
    Publication date: July 5, 2018
    Inventors: Timo Nuijens, Peter Jan Leonard Mario Quaedflieg
  • Publication number: 20170305963
    Abstract: The invention relates to a method for enzymatically synthesizing an (oligo)peptide, comprising coupling (a) an (oligo)peptide C-terminal ester or thioester and (b) an (oligo)peptide nucleophile having an N-terminally unprotected amine, wherein the coupling is carried out in a fluid comprising water, and wherein the coupling is catalyzed by a subtilisin BPN? variant or a homologue thereof, which comprises the following mutations compared to subtilisin BPN? represented by SEQUENCE ID NO: 2 or a homologue sequence thereof: a deletion of the amino acids corresponding to positions 75-83; a mutation at the amino acid position corresponding to S221, the mutation being S221C or S221 selenocysteine; preferably a mutation at the amino acid position corresponding to P225 wherein the amino acid positions are defined according to the sequence of subtilisin BPN? represented by SEQUENCE ID NO: 2. Further, the invention relates to an enzyme suitable for use as a catalyst in a method of the invention.
    Type: Application
    Filed: October 9, 2015
    Publication date: October 26, 2017
    Applicant: ENZYPEP B.V.
    Inventors: Peter Jan Leonard Mario QUAEDFLIEG, Timo NUIJENS, Jan Metske VAN DER LAAN, Dirk Barend JANSSEN, Ana TOPLAK, Bian WU
  • Patent number: 9598714
    Abstract: Method for enzymatically synthesizing an oligopeptide, comprising the coupling of an (optionally N-protected) protected oligopeptide ester with an (optionally C-protected) protected oligopeptide nucleophile in an organic solvent or an organic solvent mixture having a water content of 0.1 vol % or less, by a subtilisin in any possible form.
    Type: Grant
    Filed: February 28, 2013
    Date of Patent: March 21, 2017
    Assignee: ENZYPEP B.V.
    Inventors: Peter Jan Leonard Mario Quaedflieg, Timo Nuijens
  • Publication number: 20170044288
    Abstract: Compounds are provided which comprise (a) at least two polymerisable moieties, (b) at least one amino acid residue of an amino acid comprising at least two amine groups of which at least two amine groups have formed a carbamate, a thiocarbamate or a carbamide group, and (c) a biomolecular moiety linked directly or via a spacer to the carboxylic acid moiety of the diamino acid residue or a carboxylic acid to which such moiety can be linked. A polymer obtained from such compounds is also disclosed.
    Type: Application
    Filed: August 22, 2016
    Publication date: February 16, 2017
    Inventors: Aylvin Jorge Angelo Athanasius DIAS, Bartholomeus Johannes Margretha PLUM, Peter Jan Leonard Mario QUAEDFLIEG, Roel Wim WIERTZ
  • Patent number: 9458256
    Abstract: Compounds and polymers obtained from such compounds are provided, wherein the compounds have (a) at least two polymerizable moieties, (b) at least one amino acid residue of an amino acid comprising at least two amine groups of which at least two amine groups have formed a carbamate, a thiocarbamate or a carbamide group, and (c) a biomolecular moiety linked directly or via a spacer to the carboxylic acid moiety of the diamino acid residue or a carboxylic acid to which such moiety can be linked.
    Type: Grant
    Filed: November 7, 2007
    Date of Patent: October 4, 2016
    Assignee: DSM IP ASSETS B.V.
    Inventors: Aylvin Jorge Angelo Athanasius Dias, Bartholomeus Johannes Margretha Plum, Peter Jan Leonard Mario Quaedflieg, Roel Wim Wiertz
  • Publication number: 20160175457
    Abstract: The present invention relates to a composition, such as a coating composition, comprising a peptide linked to a lubricant, wherein the peptide is cleavable by one or more proteinases present in tear fluid. The invention further relates to an ocular device comprising said composition, such as a preformed contact lens.
    Type: Application
    Filed: September 12, 2014
    Publication date: June 23, 2016
    Applicant: DSM IP ASSETS B.V.
    Inventors: Luppo EDENS, Peter Jan Leonard Mario QUAEDFLIEG, James P. PARAKKA, Petrus Johannes HERMSEN, Dennis HEEMSKERK, Michiel AKEROYD
  • Publication number: 20150037840
    Abstract: Method for enzymatically synthesising an oligopeptide, comprising the coupling of an (optionally N-protected) protected oligopeptide ester with an (optionally C-protected) protected oligopeptide nucleophile in an organic solvent or an organic solvent mixture having a water content of 0.1 vol % or less, by a subtilisin in any possible form.
    Type: Application
    Filed: February 28, 2013
    Publication date: February 5, 2015
    Applicant: EnzyPep B.V.
    Inventors: Peter Jan Leonard Mario Quaedflieg, Timo Nuijens
  • Patent number: 8883444
    Abstract: The invention relates to a method for synthesizing a peptide by enzymatically preparing an ester or thioester from (i) an N-terminal protected amino acid or an N-terminal protected peptide where either can have a protected C-terminal ester group and (ii) an alcohol represented by the formula HO—CX2—Z or a thiol represented by the formula HS—CX2—Z, each X independently representing a halogen atom or a hydrogen atom; and Z represents an electron withdrawing group comprising at least one sp3-hybridized carbon comprising at least two substituents comprising a heteroatom directly attached to the at least one sp3-hybridized carbon or at least one sp2-hybridized carbon comprising one or two substituents comprising a heteroatom directly attached to the at least one sp2-hybridized carbon, and enzymatically coupling the prepared ester or thioester with an optionally C-terminal protected amino acid or with an optionally C-terminal protected peptide in a medium comprising 2 wt. % water or less.
    Type: Grant
    Filed: November 19, 2009
    Date of Patent: November 11, 2014
    Assignee: Enzypep B.V.
    Inventors: Peter Jan Leonard Mario Quaedflieg, Timo Nuijens, Claudia Cusan, Catharina Hubertina Maria Schepers