Patents by Inventor Rick W. Ye

Rick W. Ye has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20230054926
    Abstract: The present disclosure is directed towards skin care compositions, skin care formulations, and methods for providing treatment of scalp disorders. More specifically, the present disclosure is directed towards methods and compositions comprising at least one microorganism of the genus Yarrowia and/or a fraction thereof, and/or a cell lysate thereof, and/or fermentate thereof, and/or metabolite thereof, for treating a scalp disorder, including dandruff.
    Type: Application
    Filed: January 29, 2021
    Publication date: February 23, 2023
    Inventors: AMANDA CHAN, HELENE FLANNERY, JOHN THOMAS GANNON, SEUNG-PYO HONG, RAYMOND E JACKSON, JONATHAN DAVID PETERSON, RICK W YE
  • Publication number: 20220395543
    Abstract: Provided herein, inter alia, are compositions of short chain fatty acid (SCFA)-producing microorganisms and methods of making and using the same to inhibit pathogenic bacterial populations in the gastrointestinal tracts of an animal and additionally promote improvement of one or more metrics in an animal, such as increased bodyweight gain, decreased feed conversion ratio (FCR), improved gut barrier integrity, reduced mortality, reduced pathogen infection, and reduced pathogen shedding in feces.
    Type: Application
    Filed: October 16, 2020
    Publication date: December 15, 2022
    Inventors: John Thomas Gannon, Michael W. Bostick, Amanda Chan, Raymond E. Jackson, Victoria Vallejo Kelly, Alexander D. Kopatsis, Claus Lang, Qiong Wang, Julia Yager, Rick W. Ye
  • Publication number: 20220330576
    Abstract: Provided herein, inter alia, are compositions of organic acid-producing microorganisms and methods of making and using the same to inhibit pathogenic bacterial populations in the gastrointestinal tracts of an animal and additionally promote improvement of one or more metrics in an animal, such as increased bodyweight gain, decreased feed conversion ratio (FCR). improved gut barrier integrity, reduced mortality, reduced pathogen infection, and reduced pathogen shedding in feces.
    Type: Application
    Filed: August 14, 2020
    Publication date: October 20, 2022
    Inventors: Michael W. BOSTICK, Qiong CHENG, John Thomas GANNON, Raymond E. JACKSON, Victoria Vellejo KELLY, Alexander D KOPATSIS, Claus LANG, Gerda Saxer QUANCE, Qiong WANG, Julia YAGER, Rick W YE
  • Patent number: 10308964
    Abstract: The present invention is related to a recombinant host cell, in particular a yeast cell, comprising a dihydroxy-acid dehydratase polypeptide. The invention is also related to a recombinant host cell having increased specific activity of the dihydroxy-acid dehydratase polypeptide as a result of increased expression of the polypeptide, modulation of the Fe—S cluster biosynthesis of the cell, or a combination thereof. The present invention also includes methods of using the host cells, as well as, methods for identifying polypeptides that increase the flux in an Fe—S cluster biosynthesis pathway in a host cell.
    Type: Grant
    Filed: November 1, 2016
    Date of Patent: June 4, 2019
    Assignee: Butamax Advanced Biofuels LLC
    Inventors: Dennis Flint, Brian James Paul, Rick W. Ye
  • Patent number: 10287566
    Abstract: Methods of screening for dihydroxy-acid dehydratase (DHAD) variants that display increased DHAD activity are disclosed, along with DHAD variants identified by these methods. Such enzymes can result in increased production of compounds from DHAD requiring biosynthetic pathways. Also disclosed are isolated nucleic acids encoding the DHAD variants, recombinant host cells comprising the isolated nucleic acid molecules, and methods of producing butanol.
    Type: Grant
    Filed: January 16, 2017
    Date of Patent: May 14, 2019
    Assignee: Butamax Advanced Biofuels LLC
    Inventors: Kristen J. Kelly, Rick W. Ye
  • Patent number: 9909149
    Abstract: Dihydroxy-acid dehydratase (DHAD) variants that display increased DHAD activity are disclosed. Such enzymes can result in increased production of compounds from DHAD requiring biosynthetic pathways. Also disclosed are isolated nucleic acids encoding the DHAD variants, recombinant host cells comprising the isolated nucleic acid molecules, and methods of producing butanol.
    Type: Grant
    Filed: April 12, 2017
    Date of Patent: March 6, 2018
    Assignee: Butamax Advanced Biofuels LLC
    Inventors: Lori Ann Maggio-Hall, Brian James Paul, Steven Cary Rothman, Rick W. Ye
  • Publication number: 20170226497
    Abstract: Methods of screening for dihydroxy-acid dehydratase (DHAD) variants that display increased DHAD activity are disclosed, along with DHAD variants identified by these methods. Such enzymes can result in increased production of compounds from DHAD requiring biosynthetic pathways. Also disclosed are isolated nucleic acids encoding the DHAD variants, recombinant host cells comprising the isolated nucleic acid molecules, and methods of producing butanol.
    Type: Application
    Filed: January 16, 2017
    Publication date: August 10, 2017
    Inventors: Kristen J. Kelly, Rick W. YE
  • Publication number: 20170218405
    Abstract: Dihydroxy-acid dehydratase (DHAD) variants that display increased DHAD activity are disclosed. Such enzymes can result in increased production of compounds from DHAD requiring biosynthetic pathways. Also disclosed are isolated nucleic acids encoding the DHAD variants, recombinant host cells comprising the isolated nucleic acid molecules, and methods of producing butanol.
    Type: Application
    Filed: April 12, 2017
    Publication date: August 3, 2017
    Inventors: Lori Ann Maggio-Hall, Brian James PAUL, Steven Cary ROTHMAN, Rick W. YE
  • Patent number: 9650624
    Abstract: Dihydroxy-acid dehydratase (DHAD) variants that display increased DHAD activity are disclosed. Such enzymes can result in increased production of compounds from DHAD requiring biosynthetic pathways. Also disclosed are isolated nucleic acids encoding the DHAD variants, recombinant host cells comprising the isolated nucleic acid molecules, and methods of producing butanol.
    Type: Grant
    Filed: December 27, 2013
    Date of Patent: May 16, 2017
    Assignee: Butamax Advanced Biofuels LLC
    Inventors: Lori Ann Maggio-Hall, Brian James Paul, Steven Cary Rothman, Rick W. Ye
  • Publication number: 20170101653
    Abstract: The present invention is related to a recombinant host cell, in particular a yeast cell, comprising a dihydroxy-acid dehydratase polypeptide. The invention is also related to a recombinant host cell having increased specific activity of the dihydroxy-acid dehydratase polypeptide as a result of increased expression of the polypeptide, modulation of the Fe—S cluster biosynthesis of the cell, or a combination thereof. The present invention also includes methods of using the host cells, as well as, methods for identifying polypeptides that increase the flux in an Fe—S cluster biosynthesis pathway in a host cell.
    Type: Application
    Filed: November 1, 2016
    Publication date: April 13, 2017
    Inventors: Dennis Flint, Brian James Paul, Rick W. Ye
  • Patent number: 9611482
    Abstract: The present invention is related to a recombinant host cell, in particular a yeast cell, comprising a dihydroxy-acid dehydratase polypeptide. The invention is also related to a recombinant host cell having increased specific activity of the dihydroxy-acid dehydratase polypeptide as a result of increased expression of the polypeptide, modulation of the Fe—S cluster biosynthesis of the cell, or a combination thereof. The present invention also includes methods of using the host cells, as well as, methods for identifying polypeptides that increase the flux in an Fe—S cluster biosynthesis pathway in a host cell.
    Type: Grant
    Filed: March 15, 2013
    Date of Patent: April 4, 2017
    Assignee: Butamax Advanced Biofuels LLC
    Inventors: Dennis Flint, Brian James Paul, Rick W. Ye
  • Patent number: 9580705
    Abstract: Methods of screening for dihydroxy-acid dehydratase (DHAD) variants that display increased DHAD activity are disclosed, along with DHAD variants identified by these methods. Such enzymes can result in increased production of compounds from DHAD requiring biosynthetic pathways. Also disclosed are isolated nucleic acids encoding the DHAD variants, recombinant host cells comprising the isolated nucleic acid molecules, and methods of producing butanol.
    Type: Grant
    Filed: March 13, 2014
    Date of Patent: February 28, 2017
    Assignee: Butamax Advanced Biofuels LLC
    Inventors: Kristen J. Kelly, Rick W. Ye
  • Patent number: 9512435
    Abstract: The present invention is related to a recombinant host cell, in particular a yeast cell, comprising a dihydroxy-acid dehydratase polypeptide. The invention is also related to a recombinant host cell having increased specific activity of the dihydroxy-acid dehydratase polypeptide as a result of increased expression of the polypeptide, modulation of the Fe—S cluster biosynthesis of the cell, or a combination thereof. The present invention also includes methods of using the host cells, as well as, methods for identifying polypeptides that increase the flux in an Fe—S cluster biosynthesis pathway in a host cell.
    Type: Grant
    Filed: March 15, 2013
    Date of Patent: December 6, 2016
    Assignee: Butamax Advanced Biofuels LLC
    Inventors: Dennis Flint, Brian James Paul, Rick W. Ye
  • Publication number: 20160319307
    Abstract: Ketol-acid reductoisomerase enzymes have been identified that provide high effectiveness in vivo as a step in an isobutanol biosynthetic pathway in bacteria and in yeast. These KARIs are members of a clade identified through molecular phylogenetic analysis called the SLSL Clade.
    Type: Application
    Filed: July 14, 2016
    Publication date: November 3, 2016
    Inventors: Vasantha Nagarajan, Brian James Paul, Wonchul Suh, Jean-Francois Tomb, Rick W. Ye
  • Publication number: 20160222370
    Abstract: Yeast strains were engineered that have increased activity of heterologous proteins that require binding of an Fe—S cluster for their activity. The yeast strains have reduced activity of an endogenous Fe—S protein. Activities of heterologous bacterial, fungal or plant 2Fe-2S dihydroxy-acid dehydratases and Fe—S propanediol dehydratase reactivase were increased for increased production of products made using biosynthetic pathways including these enzymes, such as valine, isoleucine, leucine, pantothenic acid (vitamin B5), isobutanol, 2-butanone and 2-butanol.
    Type: Application
    Filed: February 5, 2016
    Publication date: August 4, 2016
    Inventors: Larry Cameron ANTHONY, Dennis Flint, Wonchul Suh, Rick W. Ye, Steven Cary Rothman, Jean-Francois Tomb
  • Patent number: 9371535
    Abstract: Specific polypeptides were identified as bacterial xylose isomerases that are able to provide xylose isomerase activity in yeast cells. The xylose isomerase activity can complete a xylose utilization pathway so that yeast can use xylose in fermentation, such as xylose in biomass hydrolysate.
    Type: Grant
    Filed: October 13, 2015
    Date of Patent: June 21, 2016
    Assignee: E I DU PONT DE NEMOURS AND COMPANY
    Inventors: Zhongqiang Chen, Kristen J Kelly, Rick W Ye
  • Publication number: 20160130590
    Abstract: Specific polypeptides were identified as bacterial xylose isomerases that are able to provide xylose isomerase activity in yeast cells. The xylose isomerase activity can complete a xylose utilization pathway so that yeast can use xylose in fermentation, such as xylose in biomass hydrolysate.
    Type: Application
    Filed: October 13, 2015
    Publication date: May 12, 2016
    Inventors: ZHONGQIANG CHEN, Kristen J Kelly, Rick W Ye
  • Patent number: 9297016
    Abstract: The present invention is related to a recombinant host cell, in particular a yeast cell, comprising a dihydroxy-acid dehydratase polypeptide. The invention is also related to a recombinant host cell having increased specific activity of the dihydroxy-acid dehydratase polypeptide as a result of increased expression of the polypeptide, modulation of the Fe—S cluster biosynthesis of the cell, or a combination thereof. The present invention also includes methods of using the host cells, as well as, methods for identifying polypeptides that increase the flux in an Fe—S cluster biosynthesis pathway in a host cell.
    Type: Grant
    Filed: February 17, 2011
    Date of Patent: March 29, 2016
    Assignee: Butamax Advanced Biofuels LLC
    Inventors: Dennis Flint, Brian James Paul, Rick W. Ye
  • Patent number: 9187743
    Abstract: Specific polypeptides were identified as bacterial xylose isomerases that are able to provide xylose isomerase activity in yeast cells. The xylose isomerase activity can complete a xylose utilization pathway so that yeast can use xylose in fermentation, such as xylose in biomass hydrolysate.
    Type: Grant
    Filed: March 11, 2013
    Date of Patent: November 17, 2015
    Assignee: E I DU PONT DE NEMOURS AND COMPANY
    Inventors: Zhongqiang Chen, Kristen J Kelly, Rick W Ye
  • Patent number: 8951937
    Abstract: A group of bacterial dihydroxy-acid dehydratases having a [2Fe-2S] cluster was discovered. Bacterial [2Fe-2S] DHADs were expressed as heterologous proteins in bacteria and yeast cells, providing DHAD activity for conversion of 2,3-dihydroxyisovalerate to ?-ketoisovalerate or 2,3-dihydroxymethylvalerate to ?-ketomethylvalerate. Isobutanol and other compounds may be synthesized in pathways that include bacterial [2Fe-2S] DHAD activity.
    Type: Grant
    Filed: March 15, 2013
    Date of Patent: February 10, 2015
    Assignee: Butamax Advanced Biofuels LLC
    Inventors: Dennis Flint, Steven Cary Rothman, Wonchul Suh, Jean-Francois Tomb, Rick W. Ye