Abstract: Embodiments of the invention generally provide apparatus and method for scheduling a process sequence to achieve maximum throughput and process consistency in a cluster tool having a set of constraints. One embodiment of the present invention provides a method for scheduling a process sequence comprising determining an initial individual schedule by assigning resources to perform the process sequence, calculating a fundamental period, detecting resource conflicts in a schedule generated from the individual schedule and the fundamental period, and adjusting the individual schedule to remove the resource conflicts.