Patents by Inventor Yuko Fukuyama

Yuko Fukuyama has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20240141423
    Abstract: [OBJECT] To enable a more sensitive and uniform detection of a molecular-related ion in an analysis of an RNA contained in a sample by means of MALDI mass spectrometry. [MEANS FOR SOLVING PROBLEM] A mixed matrix containing 2,4-dihydroxyacetophenone (DHAP) and 2,4,6-trihydroxyacetophenone monohydrate (THAP) is used as a matrix to analyze an RNA contained in a sample by a matrix-assisted laser desorption/ionization mass spectrometer.
    Type: Application
    Filed: October 25, 2023
    Publication date: May 2, 2024
    Inventor: Yuko FUKUYAMA
  • Publication number: 20240096612
    Abstract: The present invention provides a method for mass spectrometry of a negatively charged organic synthetic compound, and a matrix that can be used in said method. A method for mass spectrometry of a negatively charged organic synthetic compound, the method comprising using, as a liquid matrix, an ionic liquid comprising an amine ion and an acidic group-containing organic substance ion. For example, the amine is 3-aminoquinoline (3-AQ), and the acidic group-containing organic substance is p-coumaric acid (p-CA). The negatively charged organic synthetic compound to be analyzed is, for example, an organic synthetic polymer compound or a complex compound.
    Type: Application
    Filed: September 22, 2021
    Publication date: March 21, 2024
    Applicant: SHIMADZU CORPORATION
    Inventors: Keisuke SHIMA, Yuko FUKUYAMA
  • Publication number: 20230408513
    Abstract: A method for analyzing a microorganism including an identification step for determining which of Abony and Pakistan which are two serotypes of Salmonella bacteria is contained in a sample which contains either Abony or Pakistan, based on the presence or absence of a peak (or peaks) at a predetermined mass-to-charge ratio (or ratios) in a mass spectrum obtained by a mass spectrometric analysis of the sample, or a method for analyzing a microorganism including an identification step for determining which of Minnesota, Infantis and Brandenburg which are three serotypes of Salmonella bacteria is contained in a sample which contains Minnesota, Infantis or Brandenburg, based on the presence or absence of a peak (or peaks) at a predetermined mass-to-charge ratio (or ratios) in a mass spectrum obtained by a mass spectrometric analysis of the sample, or a method for analyzing a microorganism including an identification step for determining which of Schwarzengrund and Montevideo which are two serotypes of Salmonella ba
    Type: Application
    Filed: August 21, 2023
    Publication date: December 21, 2023
    Applicant: SHIMADZU CORPORATION
    Inventor: Yuko FUKUYAMA
  • Publication number: 20230393134
    Abstract: A method for analyzing a microorganism including an identification step for determining which of Abony and Pakistan which are two serotypes of Salmonella bacteria is contained in a sample which contains either Abony or Pakistan, based on the presence or absence of a peak (or peaks) at a predetermined mass-to-charge ratio (or ratios) in a mass spectrum obtained by a mass spectrometric analysis of the sample, or a method for analyzing a microorganism including an identification step for determining which of Minnesota, Infantis and Brandenburg which are three serotypes of Salmonella bacteria is contained in a sample which contains Minnesota, Infantis or Brandenburg, based on the presence or absence of a peak (or peaks) at a predetermined mass-to-charge ratio (or ratios) in a mass spectrum obtained by a mass spectrometric analysis of the sample, or a method for analyzing a microorganism including an identification step for determining which of Schwarzengrund and Montevideo which are two serotypes of Salmonella ba
    Type: Application
    Filed: August 21, 2023
    Publication date: December 7, 2023
    Applicant: SHIMADZU CORPORATION
    Inventor: Yuko FUKUYAMA
  • Patent number: 11774448
    Abstract: [OBJECT] To enable accurate identification of a specific serotype of Salmonella bacteria in a method for analyzing a microorganism using a MALDI-MS. [MEANS FOR SOLVING PROBLEM] The present invention is a method for analyzing a microorganism including an identification step for determining which of Abony and Pakistan which are two serotypes of Salmonella bacteria is contained in a sample which contains either Abony or Pakistan, based on the presence or absence of a peak (or peaks) at a predetermined mass-to-charge ratio (or ratios) in a mass spectrum obtained by a mass spectrometric analysis of the sample, or a method for analyzing a microorganism including an identification step for determining which of Minnesota. Infantis and Brandenburg which are three serotypes of Salmonella bacteria is contained in a sample which contains Minnesota.
    Type: Grant
    Filed: April 16, 2021
    Date of Patent: October 3, 2023
    Assignee: SHIMADZU CORPORATION
    Inventor: Yuko Fukuyama
  • Publication number: 20230243847
    Abstract: [Problem to be solved] To provide a method for identifying a marker for discriminating a microorganism based on a small amount of actual measurement data.
    Type: Application
    Filed: June 2, 2020
    Publication date: August 3, 2023
    Applicant: SHIMADZU CORPORATION
    Inventor: Yuko FUKUYAMA
  • Patent number: 11435352
    Abstract: In an analysis method of the present invention, a compound represented by the following formula (I) as a matrix is mixed into an analysis target sample and the mixture is subjected to matrix-assisted laser desorption ionization mass spectrometry. In the formula (I), R is an alkyl group having 3-11 carbon atoms. The analysis target sample is a substance for which whether or not ?-lactamase is contained is to be determined. Analysis targets include, for example, bacteria and an extract from bacteria.
    Type: Grant
    Filed: February 13, 2019
    Date of Patent: September 6, 2022
    Assignee: Shimadzu Corporation
    Inventors: Tadayuki Iwase, Yoshinobu Manome, Yoshimitsu Mizunoe, Kouki Fujioka, Yuko Fukuyama
  • Publication number: 20220003778
    Abstract: A method for analyzing a microorganism according to the present invention includes: a step of reading, from a mass spectrum obtained by a mass spectrometric analysis of a sample containing a microorganism, a mass-to-charge ratio or ratios m/z of a peak or peaks originating from 1-10 kinds of proteins selected from the group, consisting of 10 kinds of proteins of gns, YaiA, YibT, PPI, L25, L21, S8, L17, L15 and S7 as well as any combination of the 10 kinds of proteins; and an identification step configured to determine, based on the read mass-to-charge ratio or ratios, m/z, of the peak or peaks, whether or not the microorganism contained in the sample contains at least one of the following six serotypes of Salmonella bacteria: Abaetetuba, Anatum, Newport, Poona, Tallahassee and Vellore.
    Type: Application
    Filed: April 16, 2021
    Publication date: January 6, 2022
    Applicant: SHIMADZU CORPORATION
    Inventor: Yuko FUKUYAMA
  • Publication number: 20220003764
    Abstract: [OBJECT] To enable accurate identification of a specific serotype of Salmonella bacteria in a method for analyzing a microorganism using a MALDI-MS. [MEANS FOR SOLVING PROBLEM] The present invention is a method for analyzing a microorganism including an identification step for determining which of Abony and Pakistan which are two serotypes of Salmonella bacteria is contained in a sample which contains either Abony or Pakistan, based on the presence or absence of a peak (or peaks) at a predetermined mass-to-charge ratio (or ratios) in a mass spectrum obtained by a mass spectrometric analysis of the sample, or a method for analyzing a microorganism including an identification step for determining which of Minnesota. Infantis and Brandenburg which are three serotypes of Salmonella bacteria is contained in a sample which contains Minnesota.
    Type: Application
    Filed: April 16, 2021
    Publication date: January 6, 2022
    Applicant: SHIMADZU CORPORATION
    Inventor: Yuko FUKUYAMA
  • Patent number: 11137398
    Abstract: In a method for analyzing a microorganism using a matrix assisted laser desorption/ionization mass spectrometer, a matrix-and-additive mixture solution prepared by mixing one or both of an alkylphosphonic acid and a surfactant with a matrix substance is used for matrix assisted laser desorption/ionization. Either an alkylphosphonic acid or a surfactant, or both of them are used as matrix additives and are mixed with the matrix substance beforehand to prepare a matrix-and-additive mixture solution. After a solution which contains a microorganism to be analyzed has been dropped onto a sample plate, the matrix-and-additive mixture solution is dropped onto that solution and dried to form a mixed crystal which contains both the constituents of the microorganism and the matrix substance. This crystal is used as a sample for MALDI-MS analysis. The sensitivity of analysis is thereby improved, without increasing the amount of time and labor required for sample preparation.
    Type: Grant
    Filed: February 12, 2019
    Date of Patent: October 5, 2021
    Assignee: SHIMADZU CORPORATION
    Inventors: Yuko Fukuyama, Hiroto Tamura, Teruyo Kato
  • Patent number: 10626141
    Abstract: The present invention provides a method for specifically cleaving a C?-C bond of a peptide backbone and/or a side chain of a protein and a peptide, and a method for determining amino acid sequences of protein and peptide. A method for specifically cleaving a C?-C bond of a peptide backbone and/or a side chain bond of a protein or a peptide, comprising irradiating a protein or a peptide with laser light in the presence of at least one hydroxynitrobenzoic acid selected from the group consisting of 3-hydroxy-2-nitrobenzoic acid, 4-hydroxy-3-nitrobenzoic acid, 5-hydroxy-2-nitrobenzoic acid, 3-hydroxy-5-nitrobenzoic acid, and 4-hydroxy-2-nitrobenzoic acid. A method for determining an amino acid sequence of a protein or a peptide, comprising irradiating a protein or a peptide with laser light in the presence of the above specific hydroxynitrobenzoic acid to specifically cleave a C?-C bond of a peptide backbone and/or a side chain bond, and analyzing generated fragment ions by mass spectrometry.
    Type: Grant
    Filed: May 12, 2017
    Date of Patent: April 21, 2020
    Assignees: SHIMADZU CORPORATION, NATIONAL UNIVERSITY OF CORPORATION HIROSHIMA UNIVERSITY
    Inventors: Shunsuke Izumi, Koichi Tanaka, Yuko Fukuyama
  • Publication number: 20200118650
    Abstract: Each of a plurality of mass spectral data that includes a microorganism of which strain is known is acquired as training data by a training data acquirer. A sample corresponding to each training data includes an additive, and a matrix is mixed with the sample. A discrimination analysis model for discriminating a strain based on the acquired plurality of training data is produced by a model producer by performing machine learning. Mass spectral data that includes a microorganism of which strain is unknown is acquired as target data by a target data acquirer. A sample corresponding to the target data includes the additive, and the matrix is mixed with the sample. A strain of the microorganism corresponding to the acquired target data is discriminated by a discriminator based on the produced discrimination analysis model for each strain and the acquired target data.
    Type: Application
    Filed: October 7, 2019
    Publication date: April 16, 2020
    Applicant: Shimadzu Corporation
    Inventors: Yoshihiro YAMADA, Yuko FUKUYAMA, Hiroto TAMURA
  • Publication number: 20190369115
    Abstract: The present invention provides a mass spectrometry method using a mixed matrix, capable of easily and efficiently improving the ionization efficiency in mass spectrometry for peptides having a wide range of degrees of hydrophobicity (from hydrophilic to hydrophobic). A MALDI mass spectrometry method for analyzing a sample using as a mixed matrix, 2,4,6-trihydroxyalkylphenone represented by the following general formula (I): wherein R represents an alkyl group having 3 to 12 carbon atoms, and a matrix (II) for mass spectrometry that is more hydrophilic than 2,4,6-trihydroxyalkylphenone represented by the formula (I) wherein R is an alkyl group having 3 carbon atoms.
    Type: Application
    Filed: May 31, 2018
    Publication date: December 5, 2019
    Applicant: SHIMADZU CORPORATION
    Inventors: Yuko FUKUYAMA, Koichi TANAKA
  • Patent number: 10481163
    Abstract: The present invention provides a mass spectrometry method using a mixed matrix, capable of easily and efficiently improving the ionization efficiency in mass spectrometry for peptides having a wide range of degrees of hydrophobicity (from hydrophilic to hydrophobic). A MALDI mass spectrometry method for analyzing a sample using as a mixed matrix, 2,4,6-trihydroxyalkylphenone represented by the following general formula (I): wherein R represents an alkyl group having 3 to 12 carbon atoms, and a matrix (II) for mass spectrometry that is more hydrophilic than 2,4,6-trihydroxyalkylphenone represented by the formula (I) wherein R is an alkyl group having 3 carbon atoms.
    Type: Grant
    Filed: May 31, 2018
    Date of Patent: November 19, 2019
    Assignee: SHIMADZU CORPORATION
    Inventors: Yuko Fukuyama, Koichi Tanaka
  • Publication number: 20190250169
    Abstract: In a method for analyzing a microorganism using a matrix assisted laser desorption/ionization mass spectrometer, a matrix-and-additive mixture solution prepared by mixing one or both of an alkylphosphonic acid and a surfactant with a matrix substance is used for matrix assisted laser desorption/ionization. Either an alkylphosphonic acid or a surfactant, or both of them are used as matrix additives and are mixed with the matrix substance beforehand to prepare a matrix-and-additive mixture solution. After a solution which contains a microorganism to be analyzed has been dropped onto a sample plate, the matrix-and-additive mixture solution is dropped onto that solution and dried to form a mixed crystal which contains both the constituents of the microorganism and the matrix substance. This crystal is used as a sample for MALDI-MS analysis. The sensitivity of analysis is thereby improved, without increasing the amount of time and labor required for sample preparation.
    Type: Application
    Filed: February 12, 2019
    Publication date: August 15, 2019
    Applicant: Shimadzu Corporation
    Inventors: Yuko FUKUYAMA, Hiroto TAMURA, Teruyo KATO
  • Publication number: 20190250162
    Abstract: In an analysis method of the present invention, a compound represented by the following formula (I) as a matrix is mixed into an analysis target sample and the mixture is subjected to matrix-assisted laser desorption ionization mass spectrometry. In the formula (I), R is an alkyl group having 3-11 carbon atoms. The analysis target sample is a substance for which whether or not ?-lactamase is contained is to be determined. Analysis targets include, for example, bacteria and an, extract from bacteria.
    Type: Application
    Filed: February 13, 2019
    Publication date: August 15, 2019
    Applicant: Shimadzu Corporation
    Inventors: Tadayuki IWASE, Yoshinobu Manome, Yoshimitsu Mizunoe, Kouki Fujioka, Yuko Fukuyama
  • Patent number: 9885725
    Abstract: The present invention provides a mass spectrometry method that can achieve analysis with high sensitivity using a matrix additive capable of improving ionization efficiency in mass spectrometry. A mass spectrometry method comprising the steps of: forming a mixed crystal for mass spectrometry on a target plate for mass spectrometry, the mixed crystal comprising a sample to be analyzed, a matrix, and a matrix additive selected from the group consisting of a 2,5-dihydroxybenzoate and a 3,5-dihydroxybenzoate that are represented by the following formula (I): where R represents an alkyl group having 4 to 14 carbon atoms; and irradiating the mixed crystal with laser to detect the sample to be analyzed.
    Type: Grant
    Filed: September 24, 2014
    Date of Patent: February 6, 2018
    Assignees: SHIMADZU CORPORATION, HIROSHIMA UNIVERSITY
    Inventors: Yuko Fukuyama, Shunsuke Izumi
  • Publication number: 20170327533
    Abstract: The present invention provides a method for specifically cleaving a C?-C bond of a peptide backbone and/or a side chain of a protein and a peptide, and a method for determining amino acid sequences of protein and peptide. A method for specifically cleaving a C?-C bond of a peptide backbone and/or a side chain bond of a protein or a peptide, comprising irradiating a protein or a peptide with laser light in the presence of at least one hydroxynitrobenzoic acid selected from the group consisting of 3-hydroxy-2-nitrobenzoic acid, 4-hydroxy-3-nitrobenzoic acid, 5-hydroxy-2-nitrobenzoic acid, 3-hydroxy-5-nitrobenzoic acid, and 4-hydroxy-2-nitrobenzoic acid. A method for determining an amino acid sequence of a protein or a peptide, comprising irradiating a protein or a peptide with laser light in the presence of the above specific hydroxynitrobenzoic acid to specifically cleave a C?-C bond of a peptide backbone and/or a side chain bond, and analyzing generated fragment ions by mass spectrometry.
    Type: Application
    Filed: May 12, 2017
    Publication date: November 16, 2017
    Inventors: Shunsuke Izumi, Koichi Tanaka, Yuko Fukuyama
  • Patent number: 9453846
    Abstract: The present invention provides a mass spectrometry method using a matrix that is capable of easily and efficiently improving ionization efficiency in mass spectrometry without modifying a molecule to be analyzed, and a matrix for mass spectrometry. A mass spectrometry method using, as a matrix, a 2,4,6-trihydroxyalkylphenone represented by the following general formula (I): where R is an alkyl group having 4 to 12 carbon atoms. The mass spectrometry method as described above, wherein an analysis object is a hydrophobic compound, particularly, a hydrophobic peptide.
    Type: Grant
    Filed: March 4, 2014
    Date of Patent: September 27, 2016
    Assignees: SHIMADZU CORPORATION, NATIONAL UNIVERSITY OF CORPORATION HIROSHIMA UNIVERSITY
    Inventors: Yuko Fukuyama, Shunsuke Izumi
  • Publication number: 20160011205
    Abstract: The present invention provides amass spectrometry method using a matrix that is capable of easily and efficiently improving ionization efficiency in mass spectrometry without modifying a molecule to be analyzed, and a matrix for mass spectrometry. A mass spectrometry method using, as a matrix, a 2,4,6-trihydroxyalkylphenone represented by the following general formula (I): where R is an alkyl group having 4 to 12 carbon atoms. The mass spectrometry method as described above, wherein an analysis object is a hydrophobic compound, particularly, a hydrophobic peptide.
    Type: Application
    Filed: March 4, 2014
    Publication date: January 14, 2016
    Applicant: Shimadzu Corporation
    Inventors: Yuko Fukuyama, Shunsuke Izumi