Included With Sample Excitation Patents (Class 356/417)
  • Patent number: 8013984
    Abstract: A novel apparatus comprising three main systems: air sampling, detection and computerized electric system; and method of using the same in the sampling, detection and identification of bioaerosols, wherein the identification of the said bioaerosol is base on a multiphoton laser diagnostic technique along with the velocity and aerodynamic size of the particular bioaerosol. After exposing the said bioaerosols with near infrared wavelength laser, the obtained fluorescence spectra has been shown to be unique and particular for each bioaerosol, thus allowing the characterization of the said particles.
    Type: Grant
    Filed: August 24, 2009
    Date of Patent: September 6, 2011
    Inventors: Jorge E. Gonzalez Cruz, Alfredo Ortiz Vega, Victor M. Salazar Izquierdo
  • Patent number: 7995936
    Abstract: Optical measurement system and method for determining a wear level of printer components such as fuser rolls. Papers can be treated with optical brighteners, which act as distinct tag/trace molecules with fluorescent properties. A fluorescence pattern on the fuser roll can be changed in accordance with the edge density distribution in the print engine, when paper edges are accumulated on the fuser roll surface. A photo detector can capture a two-dimensional, digital image of the fluorescence pattern on the fuser roll surface to be measured, after illuminating the fuser roll, with intensity near ultraviolet range, by a light source. An image processor with a parameterized model can measure changes in the fluorescence pattern by analyzing the digital image of the fuser roll surface in order to determine the level of edge wear on the fuser rolls.
    Type: Grant
    Filed: August 22, 2008
    Date of Patent: August 9, 2011
    Assignee: Xerox Corporation
    Inventors: Eric Scott Hamby, Frank John Bonsignore, Phillip Stephen Crispino, R. Enrique Viturro
  • Patent number: 7990537
    Abstract: A reference-color measurement step of obtaining a reference-color measurement value by measuring a spectroscopic-radiation luminance of a light being emitted from a reference-color portion in a measurement direction, or a tristimulus value thereof, using a light-source-color measuring instrument, without irradiating the reference-color portion with a light source for measurement, in a predetermined measurement environment, is disclosed. An objective-portion measurement step of obtaining an objective-portion measurement value by measuring a spectroscopic-radiation luminance of a light being emitted from a measurement-objective portion in the measurement direction, or a tristimulus value thereof, using the light-source-color measuring instrument, without irradiating the measurement-objective portion with a light source for measurement, in the measurement environment, is also disclosed.
    Type: Grant
    Filed: March 23, 2007
    Date of Patent: August 2, 2011
    Assignee: Toyota Jidosha Kabushiki Kaisha
    Inventor: Atsushi Takagi
  • Patent number: 7978317
    Abstract: A miniaturized spectrometer/spectrophotometer system and methods are disclosed. A probe tip including one or more light sources and a plurality of light receivers is provided. A first spectrometer system receives light from a first set of the plurality of light receivers. A second spectrometer system receives light from a second set of the plurality of light receivers. A processor, wherein the processor receives data generated by the first spectrometer system and the second spectrometer system, wherein an optical measurement of a sample under test is produced based on the data generated by the first and second spectrometer systems.
    Type: Grant
    Filed: December 23, 2008
    Date of Patent: July 12, 2011
    Assignee: Vita Zahnfabrik H. Rauter GmbH & Co. KG
    Inventors: Wayne D. Jung, Russell W. Jung, Walter W. Sloan, Alan R. Loudermilk
  • Patent number: 7961315
    Abstract: Enhancement of fluorescence emission from fluorophores bound to a sample and present on the surface of two-dimensional photonic crystals is described. The enhancement of fluorescence is achieved by the combination of high intensity near-fields and strong coherent scattering effects, attributed to leaky photonic crystal eigenmodes (resonance modes). The photonic crystal simultaneously exhibits resonance modes which overlap both the absorption and emission wavelengths of the fluorophore. A significant enhancement in fluorescence intensity from the fluorophores on the photonic crystal surface is demonstrated.
    Type: Grant
    Filed: June 15, 2010
    Date of Patent: June 14, 2011
    Assignee: The Board of Trustees of the University of Illinois
    Inventors: Brian T. Cunningham, Nikhil Ganesh, Patrick C. Mathias, Ian D. Block
  • Patent number: 7961323
    Abstract: An apparatus and method are provided for creating an image of a microarray. The apparatus includes at least one light source configured to direct light toward the microarray. The apparatus includes an excitation filter configured to filter the light into a first frequency band towards dichromatic mirror. The dichromatic mirror reflects light onto the microarray causing the microarray to emit electromagnetic energy. The apparatus includes emission filter configured to filter the electromagnetic energy within a second frequency band. The apparatus further includes an imaging unit having a charged coupled device (CCD), the CCD having an imaging surface masked by a pinhole blind such that when the pinhole blind receives electromagnetic energy from the emission filter, an image is created of the entire microarray.
    Type: Grant
    Filed: March 9, 2007
    Date of Patent: June 14, 2011
    Assignee: Tessarae, LLC
    Inventor: Clark Tibbetts
  • Publication number: 20110128545
    Abstract: Various embodiments of a sequencing system capable of rapidly imaging samples at multiple wavelengths are provided herein. In one embodiment, the system includes a fast-indexing filter wheel having a plurality of excitation and emission filters capable of being rapidly rotated into and out of communication with an excitation source (e.g., an arc lamp, a laser. For example, the filter wheel can be configured to index in an amount of time falling within a range of about 40 ms to about 60 ms, preferably 50 ms. The system can also be configured to account for vibrations resulting from the quick starts and stops of the fast-indexing filter wheel as well as vibrations resulting from other sources. Various methods of rapidly imaging a sample at multiple wavelengths are also provided herein.
    Type: Application
    Filed: August 31, 2010
    Publication date: June 2, 2011
    Applicant: LIFE TECHNOLOGIES CORPORATION
    Inventors: David Cox, Marc Haberstroh, Patrick Kinney, Albert Carrillo, Jon Hoshizaki, Maryam Shariati, Howard King, Joe Lee, Matthew Chan
  • Patent number: 7933430
    Abstract: The spectral method for determining the concentrations of a substance in a mixture of any number of substances is defined by a chemical image having a plurality of pixels (520). The method includes steps of providing a spectrum for each of the n number of substances in the mixture (530), and obtaining the spectrum for one of the plurality of pixels, and calculating a plurality of estimated concentrations of each substance in the mixture as a function of the spectrum for each substance and the spectrum for the pixel, and calculating a deviation value for each of the plurality of estimated concentrations as a function of the spectrum of each of the number of substances in the mixture, and selecting the estimated concentration with the lowest deviation factor as a most likely concentration of each substance in the mixture (550).
    Type: Grant
    Filed: April 15, 2005
    Date of Patent: April 26, 2011
    Assignee: ChemImage Corporation
    Inventor: Robert Schweitzer
  • Patent number: 7920258
    Abstract: A method of selecting components for a multivariate optical computing and analysis system to isolate a spectral region includes selecting a spectral region of interest; selecting a spectral element with a predetermined transmission characteristic to control a spectral range of an illumination source; illuminating a sample with the illumination source; and analyzing an optical frequency returned by the sample relative to the spectral region of interest.
    Type: Grant
    Filed: November 27, 2006
    Date of Patent: April 5, 2011
    Assignee: Halliburton Energy Services, Inc.
    Inventors: Michael L. Myrick, Robert P. Freese, Luisa T. M. Profeta, Jonathan H. James, John C. Blackburn, Ryan J. Priore
  • Patent number: 7911605
    Abstract: A method of developing a multivariate optical element for an optical analysis system includes forming an optically absorptive spectral element having an optically absorptive material, the optically absorptive material being absorbing in a predetermined spectral region; and utilizing the optically absorptive spectral element in the optical analysis system.
    Type: Grant
    Filed: November 27, 2006
    Date of Patent: March 22, 2011
    Assignee: Halliburton Energy Services, Inc.
    Inventors: Michael L. Myrick, Robert P. Freese, Jonathan H. James, Ryan J. Priore, John C. Blackburn
  • Patent number: 7911606
    Abstract: The invention relates to a method for the spectral analysis of metal samples with the following steps: a. Recording of a spectrum of an unknown sample with a number of preset excitation parameters, b. Comparison of the spectrum with stored spectra of a number of control samples, c. Determination of the control sample with the best concordance of spectra, d. Setting of the excitation parameters, which are stored for the best and closest control sample determined in step c, e. Recording of the spectrum of the unknown sample with the excitation parameters set in step d, f. Calculation of the intensity ratios of the analysis lines stored for the control sample and the internal standards of the spectrum recorded in step e.
    Type: Grant
    Filed: November 4, 2005
    Date of Patent: March 22, 2011
    Assignee: Spectro Analytical Instruments GmbH
    Inventor: Heinz-Gerd Joosten
  • Publication number: 20110058172
    Abstract: A method of identifying analytes that react with probes on encoded particles. The method includes providing a support substrate that has a plurality of the particles randomly distributed on the support substrate. The particles have elongated bodies with codes that extend along the corresponding bodies. The codes identify probes that are attached to the corresponding bodies, wherein at least some of the probes include fluorescent labels from reactions with the analytes. The method also includes detecting fluorescent signals that are emitted from the fluorescent labels. The fluorescent signals emit from random spatial locations along the support substrate. The method also includes detecting the codes of the particles at the random spatial locations along the support substrate and analyzing the codes and the fluorescent signals to identify the analytes that react with the probes on the particles.
    Type: Application
    Filed: November 8, 2010
    Publication date: March 10, 2011
    Applicant: ILLUMINA, INC.
    Inventors: JOHN A. MOON, ALAN D. KERSEY, MARTIN A. PUTNAM, TUO LI
  • Patent number: 7903248
    Abstract: To increase the direct light received by the detector and decrease reflections from the detection component support structures, the luminescent substance is placed as close to the detector as possible. More specifically, the apparatus is configured so as to slide out a structure shielding the detector from light and at the same time slide in the vessel containing the luminescent substance therein until the vessel comes right under the detector. The invention can detect trace luminescence from a small-volume sample by maximizing the amount of direct light received from the sample and minimizing the decay of indirect light received from the sample attributable to interactions with the vessel for containing the sample therein, the structure for collecting light, and the structure for supporting other detection components.
    Type: Grant
    Filed: February 26, 2008
    Date of Patent: March 8, 2011
    Assignee: Hitachi High-Technologies Corporation
    Inventors: Hidetsugu Tanoue, Masato Ishizawa, Yoichiro Suzuki
  • Patent number: 7898665
    Abstract: In various embodiments of the invention, a unique construction for Light Emitting Diodes (LEDs) with at least one luminescent rod and extracting optical elements is used to generate a variety of high brightness light sources with different emission spectra. In an embodiment of the invention, forced air cooling is used to cool the luminescent rod. In an embodiment of the invention, totally internal reflected light can be redirected outward and refocused. In another embodiment of the invention, light emitted by the luminescent rod is out-coupled for use in a variety of applications. In various embodiments of the invention, a plurality of independent narrow band colors can be coaxially combined.
    Type: Grant
    Filed: August 6, 2008
    Date of Patent: March 1, 2011
    Assignee: Lumencor, Inc.
    Inventors: Thomas J. Brukilacchio, Arlie R. Conner
  • Patent number: 7898659
    Abstract: A sensor has a sensing surface, to which a specific substance R to be detected can bind. Further, the sensor has a metal portion, at least a portion of which is exposed at the sensing surface, and in which localized plasmons can be excited. The sensor is used in sensing, in which the substance R to be detected is marked with a fluorescent marker Lu that selectively binds to the substance R to be detected and one of two-photon excitation fluorescence and multi-photon excitation fluorescence of the fluorescent marker Lu is detected. Further, the sensing surface is illuminated with measurement light L1 having a wavelength that can excite localized plasmons in the metal portion and that is an absorption wavelength of the fluorescent marker Lu, at which the fluorescent marker Lu emits one of the two-photon excitation fluorescence and the multi-photon excitation fluorescence.
    Type: Grant
    Filed: December 10, 2007
    Date of Patent: March 1, 2011
    Assignee: FUJIFILM Corporation
    Inventor: Masayuki Naya
  • Patent number: 7894066
    Abstract: The image data capture of a test piece is performed with at least one first camera. A reference point of the test piece is determined by processing the image data recorded with the at least one first camera. A burner is positioned at a prescribed first distance from the reference point for the flame exposure of the test piece. At least one second camera may also detect whether the test piece exposed to a flame is burning or incandescing. At least one third camera may be used for monitoring the burner flame and at least one fourth camera may be used for determining whether the test piece drips while burning. Furthermore, at least one detector may used for detecting whether the drips ignite a pad of wadding positioned under the test piece.
    Type: Grant
    Filed: July 14, 2008
    Date of Patent: February 22, 2011
    Assignee: Underwriters Laboratories Inc.
    Inventors: Martin Behrendt, Bahman Sarabi, Wilfried Teeting
  • Patent number: 7894067
    Abstract: For the high spatial resolution imaging of a structure in a sample (2) the structure is marked with a substance which can be changed over by means of a first electromagnetic signal (5) from a first state having a larger absorption cross section for a second electromagnetic signal (3) into a second state having a smaller absorption cross section for the second signal (3) or which can be changed over by means of a first electromagnetic signal (5) into a first state having a larger absorption cross section for a second electromagnetic signal (3) from a second state having a smaller absorption cross section for the second signal (3). A spatially delimited distribution of a portion of the substance in the first state is then set by means of the first signal (5). Afterward, the second electromagnetic signal (3) is applied to the sample (2), and a local temperature increase in the sample (2) which results from the larger absorption cross section of the substance in the first state is detected.
    Type: Grant
    Filed: June 17, 2009
    Date of Patent: February 22, 2011
    Assignee: Max-Planck-Gesellschaft zur Förderung der Wissenschaften e.V.
    Inventor: Stefan Hell
  • Patent number: 7889341
    Abstract: A multiphoton-excitation laser scanning microscope capable of efficiently collecting fluorescence emitted from a specimen to acquire a brighter multiphoton-excitation fluorescence image is provided. This multiphoton-excitation laser scanning microscope includes a multiphoton-excitation laser light source for emitting ultrashort pulsed laser light, a light-scanning unit configured to scan a specimen with the ultrashort pulsed laser light emitted from the multiphoton-excitation laser light source in two dimensions, an objective lens configured to focus the ultrashort pulsed laser light scanned by the light-scanning unit on the specimen, a collector lens disposed opposite the objective lens, with the light-scanning unit disposed therebetween, to collect fluorescence emitted from the specimen, and a light detector configured to detect the fluorescence collected by the collector lens. The collector lens has a higher numerical aperture and a larger field number than the objective lens.
    Type: Grant
    Filed: April 21, 2008
    Date of Patent: February 15, 2011
    Assignee: Olympus Corporation
    Inventors: Makoto Araki, Yasunari Matsukawa, Hiroshi Sasaki, Makio Ueno
  • Publication number: 20110026029
    Abstract: A discrimination filtering device includes a filter and a filter having different pass bands, a detection unit, a processing unit, and a result output unit. The detection unit detects an electromagnetic wave from an object that is the target of identification through the filters. The pass band of the filters is designed to be suitable for object discrimination. The processing unit substitutes the output from the detection unit into a discrimination function determined based on the pass band of the filters and the teaching spectrum obtained in advance to infer the group which the object belongs to based on the substituted result.
    Type: Application
    Filed: March 27, 2009
    Publication date: February 3, 2011
    Applicants: SUMITOMO ELECTRIC INDUSTRIES, LTD., National University Corporation Toyohashi Unversity of Technology
    Inventors: Takashi Iwasaki, Masaharu Mogi, Shigeki Nakauchi
  • Patent number: 7880878
    Abstract: The Nebulized Airborne Biohazard Stage Alert (NABSA) is a method utilizing an optical particle counter in conjunction with a fluorometer as triggers to detect and assess potential biohazard threats infused into surrounding air. In the first stage an optical particle counter is constantly passing sampled air in front of an energy source, in turn scattering light. This scattered light is evaluated to establish if the particles are above one micrometer in concentrations, and thus potentially an aerosolized threat. Such detection triggers the secondary stage in which the sample particles are tested for viability via processing through a dye with fluorescent properties affected when bonded with an entity universally found in all biological substances and a UV light source. The detection of concentrations of oversized, viable particles triggers the third stage to compare a sample of the particles to known biowarfare agents to delineate the specific agent species.
    Type: Grant
    Filed: June 14, 2010
    Date of Patent: February 1, 2011
    Assignee: Respiratory Management Technology
    Inventors: Michael McCawley, Simon Goetze, Phillip Green, II, Jeannette Hoy, Bernard McGee
  • Patent number: 7872752
    Abstract: Disclosed herein is a detection system for identifying an unidentified substance in a sample, comprising light emitting sources, where at least one of the light emitting sources emits light in the infrared region; a circuit board; a trigger, that activates a pulse of electrons from the circuit board to the light emitting sources; a detector; and a central processing unit, where fluorescence generated from the unknown unidentified substance that is illuminated by light from the light emitting sources is collected in the detector and analyzed in the central processing unit.
    Type: Grant
    Filed: September 15, 2009
    Date of Patent: January 18, 2011
    Assignee: Morpho Detection, Inc.
    Inventors: Steven Francis LeBoeuf, Alexey Vasilievich Vert, Rui Chen, Radislav Alexandrovich Potyrailo
  • Patent number: 7872748
    Abstract: A real-time, 3D, non-linear microscope measuring system and method for examining a set of microscopic image points in different image planes. The system comprises a pulsed laser or parametric oscillator light source generating an examining optical signal, and is applicable to measure and/or photochemically stimulate pre-selected points within a short time interval. The system further comprises a bundle of fibers composed of optical fibers or other waveguides, a rapidly working optical switch, a imaging system, a light source and an optical system. The examining optical signal is a fluorescent or other optical signal imaged on the required spot.
    Type: Grant
    Filed: January 27, 2006
    Date of Patent: January 18, 2011
    Inventors: Szilveszter E. Vizi, Róbert Szipöcs, Balázs Rózsa, Pál Maák, Júlia Fekete, László Valenta, Gergely Katona, Péter Kalló, Károly Osvay
  • Patent number: 7869042
    Abstract: In apparatus for the production and detection of fluorescence at a sample surface, the height of the apparatus above the sample surface is reduced, and loss of the emitted fluorescence due to reflection loss and light scattering is minimized. The apparatus comprises a three-dimensionally curved light reflecting surface (40) that directs light from a light source (32) transversely to its original path and focuses the light on to an illumination zone (30) at or below the sample surface. The reflecting surface (40) also collects, directs and at least partially collimates emitted fluorescence transversely to its original path and towards a detector (46).
    Type: Grant
    Filed: June 23, 2009
    Date of Patent: January 11, 2011
    Assignee: PreciSense A/S
    Inventor: Søren Aasmul
  • Patent number: 7859670
    Abstract: A system and a method for detecting fluorescence in a microfluidic chip having a microchamber and measuring the amount of the fluorescence are disclosed. In the system and method, an optical device detects fluorescence generated by a fluorescent material. The position of the outer circumference of a microfluidic chip is identified based on the change of the amount of the detected fluorescence. Then, the position of a microchannel is calculated based on the position of the outer circumference of the microfluidic chip and the distance between the outer circumference and the microchamber. Hence, the amount of the fluorescence only generated from the microchamber of the microfluidic chip is automatically calculated. Further, a plurality of samples can be analyzed at the same time, thereby reducing analysis time and cost.
    Type: Grant
    Filed: October 15, 2007
    Date of Patent: December 28, 2010
    Assignee: Samsung Electronics Co., Ltd.
    Inventors: Suhyeon Kim, Jintae Kim
  • Patent number: 7852479
    Abstract: Apparatus and methods for measuring the fluorescence of large multi-cellular organisms in a sample of liquid includes a pumping mechanism, a fluorescence measuring device, a method of analyzing the measurements, and optionally, a sorting mechanism. The pumping mechanism transfers large multi-cellular organisms from a reservoir through a fluorescence-measuring device causing minimum physical damage and/or stress. The pressure differential driving the organisms from a sample container/reservoir through the measuring device can be derived from gravity, air pressure, or liquid pressure, or some combination of the three. The fluorescence can be measured in a cytometer using a light detector or imager. Generally the detection element will include a filter, isolating the wavelength of fluorescent emission. The illumination may be provided by a laser or by an LED, combined with the use of dichroic mirrors to allow multiple wavelength simultaneous illumination.
    Type: Grant
    Filed: November 13, 2007
    Date of Patent: December 14, 2010
    Assignee: University of Wyoming
    Inventor: Paul E. Johnson
  • Patent number: 7847941
    Abstract: A system for analyzing a sample for the presence of an analyte in a sample. The system includes a sample holder for containing the sample; an excitation source, such as a laser, and at least one linear array radially disposed about the sample holder. Radiation from the excitation source is directed to the sample, and the radiation induces fluorescent light in the sample. Each linear array includes a plurality of fused silica optical fibers that receive the fluorescent light and transmits a fluorescent light signal from the first end to an optical end port of the linear array. An end port assembly having a photo-detector is optically coupled to the optical end port. The photo-detector detects the fluorescent light signal and converts the fluorescent light signal into an electrical signal.
    Type: Grant
    Filed: December 5, 2006
    Date of Patent: December 7, 2010
    Assignee: Los Alamos National Security, LLC
    Inventors: Robert W. Carpenter, II, Richard Rubenstein, Martin Piltch, Perry Gray
  • Patent number: 7843567
    Abstract: A method of identifying an analyte. The method includes providing a plurality of microparticles. The microparticles have optically detectable codes extending along bodies of the corresponding microparticle. The microparticles have the chemical probes attached thereto. Each of the chemical probes is associated with a corresponding one of the codes. The method also includes selectively binding target analytes to the chemical probes on the microparticles to produce labeled microparticles and distributing the labeled microparticles to random locations of a substrate. The method also includes determining the codes for the labeled microparticles in the random array and code positions of the codes in the random array. The method further includes detecting the label on the labeled microparticles in the random array and label positions of the labels in the random array. The method also includes using the code positions and the label positions to analyze the target analyte.
    Type: Grant
    Filed: December 22, 2009
    Date of Patent: November 30, 2010
    Assignee: Illumina, Inc.
    Inventors: John A. Moon, Alan D. Kersey, Martin A. Putnam, Tuo Li
  • Patent number: 7843566
    Abstract: Apparatus comprising a holder for a sample which comprises a packing or coating capable of immobilising or isolating a target compound in a layer or band, an excitation unit that emits radiation that excites fluorescence in a target compound or derivatised target compound immobilised or isolated in the packing or coating, or in another moiety stimulated by the target compound, a detection unit that is sensitive to radiation emitted by a fluorescing target compound, derivative or target compound-stimulated moiety and outputs a signal proportional to the amount of radiation detected, means for relatively moving the sample cartridge and the detection unit whereby the radiation may be sensed and a processing unit that converts the output of the detector unit into a readable value related to the amount of target compound immobilised in the layer or band.
    Type: Grant
    Filed: May 19, 2006
    Date of Patent: November 30, 2010
    Assignee: University of Greenwich
    Inventors: Raymond Douglas Coker, Martin Jesse Nagler, Michael Paul Andreou
  • Patent number: 7843568
    Abstract: The present invention relates generally to the field of biochemical laboratory instrumentation for different applications of measuring properties of samples on e.g. microtitration plates and corresponding sample supports. The object of the invention is achieved by providing an optical measurement instrumentation wherein a sample (281-285) is activated (212AS, 218AS) and the emission is detected (291, 292), wherein between the activation and detection phases of measuring the sample, a shift is made in the relative position between the sample and means (218) directing the activation radiation to the sample as well as in the relative position between the sample and the means (293) receiving the emission radiation from the sample. This can be implemented e.g. by moving (299) the sample assay plate and/or a measuring head between the activation and emission phases of a sample.
    Type: Grant
    Filed: January 25, 2010
    Date of Patent: November 30, 2010
    Assignee: Wallac Oy
    Inventor: Petri Kivela
  • Patent number: 7839500
    Abstract: The present invention relates to a spectroscopic method and associated apparatus and computer program for measuring and analysing intensities of fluorescent molecules excited by an energy pulse. The method includes the steps of: a) generating a transient state build-up in the fluorescent molecules by means of an excitation pulse, within which pulse repetitive excitation-emission cycles are induced in the fluorescent molecules between their ground, typically singlet (So) and excited, typically singlet (SO states, resulting also in transition from S] to the transient state, b) relaxation of population of the transient state by transition back to the ground state in a time period following directly after the excitation pulse, c) determination of the transient state population by recording the fluorescence. The invention is characterised by varying pulse characteristics from one sequence of pulses to the next so as to circumvent the need of time-resolution in the detection.
    Type: Grant
    Filed: May 29, 2006
    Date of Patent: November 23, 2010
    Inventor: Jerker Widengren
  • Patent number: 7839507
    Abstract: Methods and systems for processing signals to minimize the effects of dye crosstalk. Deconvolution of multiplexed dye signals can include corrections for residual error determined from experimental measurements. Residual error corrections can account for reaction or assay specific factors and modify the subsequent filtering of signals. Correction values can be determined for specific dye-probe conjugates to minimize dye crosstalk and may be combined with residual error correction to further minimize errors in spectral deconvolution. Apparatus, systems, and computer-readable media can process signals and modify filters based on values obtained using the methods.
    Type: Grant
    Filed: June 28, 2007
    Date of Patent: November 23, 2010
    Assignee: Applied Biosystems, LLC
    Inventors: Stephen J. Gunstream, David C. Woo, John P. Bodeau, Mark A. McCoy
  • Patent number: 7834999
    Abstract: A multivariate optical computing and analysis system includes a light source configured to radiate a first light along a first ray path; a modulator disposed in the first ray path, the modulator configured to modulate the first light to a desired frequency; a spectral element disposed proximate the modulator, the spectral element configured to filter the first light for a spectral range of interest of a sample; a cavity disposed in communication with the spectral element, the cavity configured to direct the first light in a direction of the sample; a tube disposed proximate the cavity, the tube configured to receive and direct a second light generated by a reflection of the first light from the sample, the tube being further configured to separate the first and second lights; a beamsplitter configured to split the second light into a first beam and a second beam; an optical filter mechanism disposed to receive the first beam, the optical filter mechanism configured to optically filter data carried by the firs
    Type: Grant
    Filed: November 27, 2006
    Date of Patent: November 16, 2010
    Assignee: University of South Carolina
    Inventors: Michael L. Myrick, Jonathan H. James, John C. Blackburn, Robert P. Freese
  • Patent number: 7830516
    Abstract: An automated seed sampler includes a sampling station, a sampler for removing material from a seed in the sampling station; a seed conveyer for conveying the seed from the sampling station to a compartment in a seed tray, and a conveyor for conveying the material removed from the seed to a corresponding compartment in a sample tray. And a method for bulking up a quantity of plant seed having a desired characteristic generally includes testing each seed for the desired characteristic, cultivating plants only from seeds which tested positive for the desired characteristic, recovering seed from the cultivated plants, and repeating the processes of testing, cultivating, and recovering seed for one or multiple generations.
    Type: Grant
    Filed: October 1, 2008
    Date of Patent: November 9, 2010
    Assignee: Monsanto Technology LLC
    Inventors: Kevin L. Deppermann, Michael W. Petersen
  • Patent number: 7830515
    Abstract: A method and apparatus for evaluating a bioaerosol sample is provided which includes detecting frequency and/or time resolution factors that allow discriminate between a plurality of signals emitted by the bioaerosol to selectively detect biological materials contained in the bioaerosol sample from materials of non-biological origin and potentially associated with a pathogenic bioaerosol.
    Type: Grant
    Filed: June 18, 2008
    Date of Patent: November 9, 2010
    Assignee: The Johns Hopkins University
    Inventors: George M. Murray, Cheryl S. Schein, David R. Kohler, Jennifer L. Sample, Jennifer A. Nix, Protagoras N. Cutchis, Adam K. Arabian, Harvey W. Ko, Micah A. Carlson, Michael P. McLoughlin
  • Patent number: 7826053
    Abstract: An exemplary embodiment includes an apparatus having an energy source for selectively directing a first energy toward a first material. The at least a portion of the first energy excites a preselected second material to an excited state where at least two photons of the first energy are absorbed by the molecule of the second material causing the molecule to emit a second energy at about a predetermined wavelength. The apparatus also includes a control system for directing the first energy toward the first material. The apparatus also includes a detector for detecting at least a portion of the emitted second energy when the detector is more than about 40 meters from the molecule.
    Type: Grant
    Filed: October 1, 2007
    Date of Patent: November 2, 2010
    Assignee: The Regents of the University of Michigan
    Inventors: Theodore Goodson, III, Oleg Varnavski
  • Patent number: 7824902
    Abstract: A port assembly for use with a polymeric bioreactor bag includes the following components: i) a hollow port member made from a material which can be fusibly affixed to the wall surface of the bioreactor bag; ii) at least one fluorophore spot positioned on the port member; iii) a conduit for conveying excitation light from an optical source to the fluorophore, which conduit can be a lens, a curved parabolic collimator, a shaped reflector or a wave guide; and iv) a second conduit for conveying fluorescent emission light from the excited fluorophore to a photo-detector, which second conduit although different from the first, can likewise be a lens, a curved parabolic collimator, a shaped reflector or a wave guide.
    Type: Grant
    Filed: March 17, 2007
    Date of Patent: November 2, 2010
    Inventors: Mark Selker, Benjamin Blizard, Timothy Johnston, Barbara Paldus
  • Patent number: 7826052
    Abstract: A method to correct measurement error in a resonance energy-transfer assay, including exciting anti-Stokes photoluminescent donors with at least one wavelength of light which is greater than an emission wavelength of acceptor molecules; measuring emission at the acceptor's emission wavelength and which differs from the donor's emission wavelength in at least two different time windows; a first time window within the time window defined by the excitation light pulse and a second non-overlapping time window which follows the first time window; and correcting the emission signal, which includes signals originating from non-radiative and radiative energy transfer, within the first time window by estimating the ratio of the signals from non-radiative and radiative energy transfer or the signal originating from radiative energy transfer using at least one emission signal measured in the second time window.
    Type: Grant
    Filed: May 24, 2006
    Date of Patent: November 2, 2010
    Assignee: Hidex Oy
    Inventors: Ville Haaslahti, Juhani Aalto, Timo Oikari, Tero Soukka
  • Patent number: 7821640
    Abstract: To examine a plate-shaped object comprising fluorophores and having a first face and an opposite second face, the method comprises a first sequential illumination step of the first face of the object with a fluorophore excitation light and a first sequential acquisition step of a first series of images by detecting light emitted by the second face of the object. The density of the lighting points is lower than the density of the detection points and the method further comprises a second sequential illumination step of the second face of the object with a fluorophore excitation light and a second sequential acquisition step of a second series of images by detecting light emitted by the first face of the object. Reconstruction of the three-dimensional fluorophore distribution image in the object is performed by means of the first and second series of images.
    Type: Grant
    Filed: January 12, 2007
    Date of Patent: October 26, 2010
    Assignee: Commissariat a l'Energie Atomique
    Inventors: Anne Koenig, Lionel Herve
  • Patent number: 7817267
    Abstract: A system for multispectral confocal mapping of a tissue, comprising: a light source; an optical fiber having an aperture providing a confocal pinhole, a scanner being free-space coupled to said aperture and operative to scan the tissue and provide intensity signals for each of a plurality of points therein; a switch or modulator operative to convert input signals to optical pulses; a reflector that receives the optical pulses and provides a temporal sequence of wavelength selective reflections; and, a detector optically coupled to receive the temporal sequence of wavelength selective reflections.
    Type: Grant
    Filed: April 15, 2008
    Date of Patent: October 19, 2010
    Assignee: Princeton Lightwave, Inc
    Inventor: Gary Carver
  • Patent number: 7812952
    Abstract: A method for reading slides bearing fluorescent deposits, such as used in serology or molecular biology analysis, includes: incubating a slide with a sample of serum from a patient, or a dilution thereof, and revealing antibodies in the sample bound to the deposits by labelled reagents. Label reading and analysis is performed by a device including a slide positioner, light emitting diodes arranged in illumination channels to provide oblique illumination at different wave lengths, and a collection optic for forming an image of the deposits on a sensor.
    Type: Grant
    Filed: August 1, 2005
    Date of Patent: October 12, 2010
    Assignee: INODIAG
    Inventors: Michel Delaage, Gilles Nicolaï, Jean-Michel Decaudin, Pascal Huguet-Chantôme
  • Patent number: 7812956
    Abstract: Methods and apparatus, including computer program products, implementing and using techniques for collecting optical data pertaining to one or more characteristics of a sample. The apparatus has a light source, one or more illumination optical elements, a scanner, one or more collection optical elements, and a device forming an aperture that limits detection of light from the sample. The illumination optical elements direct a light beam from the light source onto the sample. The scanner scans the light beam across the sample. The collection optical elements collect light from the sample and transmit the collected light to a detector. None of the collection optical elements are included among the illumination optical elements. The device forming an aperture limits detection of light from the sample to light associated with a limited vertical depth within the sample, and is one of the collection optical elements.
    Type: Grant
    Filed: February 22, 2008
    Date of Patent: October 12, 2010
    Assignee: Blueshift Biotechnologies, Inc.
    Inventors: Evan F. Cromwell, Johann F. Adam, Andrei Brunfeld, Paul B. Comita, Christopher J. Seipert
  • Patent number: 7800753
    Abstract: Spectroscopic chemical analysis methods and apparatus are disclosed which employ deep ultraviolet (e.g. in the 200 nm to 300 nm spectral range) electron beam pumped wide bandgap semiconductor lasers, incoherent wide bandgap semiconductor light emitting devices, and hollow cathode metal ion lasers to perform non-contact, non-invasive detection of unknown chemical analytes. These deep ultraviolet sources enable dramatic size, weight and power consumption reductions of chemical analysis instruments. Chemical analysis instruments employed in some embodiments include capillary and gel plane electrophoresis, capillary electrochromatography, high performance liquid chromatography, flow cytometry, flow cells for liquids and aerosols, and surface detection instruments. In some embodiments, Raman spectroscopic detection methods and apparatus use ultra-narrow-band angle tuning filters, acousto-optic tuning filters, and temperature tuned filters to enable ultra-miniature analyzers for chemical identification.
    Type: Grant
    Filed: March 6, 2009
    Date of Patent: September 21, 2010
    Assignee: Photon Systems
    Inventors: William F. Hug, Ray D. Reid
  • Patent number: 7777885
    Abstract: The present invention provides a system for imaging circulating tumor cells from blood after enrichment. The system is designed to provide optimum use in a clinical laboratory setting with minimum laboratory bench top space. Operator intervention is minimized compared to other analytical methodologies. The system is useful in the enumeration and identification of target cells in a sample specimen for screening and detection of early stage pre-metastatic cancer, monitoring for disease remission in response to therapy and selection of more effective dose regimens or alternative therapies for individual patients.
    Type: Grant
    Filed: February 2, 2007
    Date of Patent: August 17, 2010
    Assignee: Veridex, LLC
    Inventors: Frank A. W. Coumans, Arthur G. Marlin, Frank P. Modica, John V. Verrant
  • Patent number: 7773208
    Abstract: Embodiments relate to a device for measuring characterisation by reflectometry including a source that emits a light beam, a detector, optics for processing and controlling this light beam so as to focus it on a reflective surface to be measured in the form of a spot and to receive it on the detector, command and acquisition modules, a camera and modules for imaging the spot on the detector and on the camera, wherein the camera is connected to the command and acquisition means so as to automatically focus the spot on the reflective surface to be measured and to automatically conjugate the reflective surface to be measured with the surface of the detector.
    Type: Grant
    Filed: May 29, 2007
    Date of Patent: August 10, 2010
    Assignee: Commissariat a l'Energie Atomique
    Inventors: Herve Piombini, Philippe Voarino
  • Patent number: 7773223
    Abstract: An image scanning apparatus has an organic CMOS image sensor mounted in a base, and a photoreceptive surface of the image sensor is exposed on a top side of the base. A subject is placed directly on the photoreceptive surface, and the subject and the photoreceptive surface are covered up with a cover light-tightly. Thus the image sensor detects only chemiluminescent light from the subject. As for a fluorochrome-labeled subject, the subject placed directly on the photoreceptive surface is irradiated with excitation light from a light source mounted in the cover. The image sensor is provided with a filter for blocking the excitation light from its photoelectric conversion layers, so the image sensor detects only fluorescent rays generated from the excited fluorochrome-labeled subject. The image scanning apparatus needs no redundant space in perpendicular direction to the photoreceptive surface.
    Type: Grant
    Filed: March 14, 2008
    Date of Patent: August 10, 2010
    Assignee: FUJIFILM Corporation
    Inventor: Seishi Ikami
  • Patent number: 7768640
    Abstract: Enhancement of fluorescence emission from fluorophores bound to a sample and present on the surface of two-dimensional photonic crystals is described. The enhancement of fluorescence is achieved by the combination of high intensity near-fields and strong coherent scattering effects, attributed to leaky photonic crystal eigenmodes (resonance modes). The photonic crystal simultaneously exhibits resonance modes which overlap both the absorption and emission wavelengths of the fluorophore. A significant enhancement in fluorescence intensity from the fluorophores on the photonic crystal surface is demonstrated.
    Type: Grant
    Filed: November 19, 2007
    Date of Patent: August 3, 2010
    Assignee: The Board of Trustees of the University of Illinois
    Inventors: Brian T. Cunningham, Nikhil Ganesh, Patrick C. Mathias, Ian D. Block
  • Patent number: 7767439
    Abstract: A real time polymerase chain reaction (“PCR”) monitoring apparatus includes, a microchip-type PCR tube that has a PCR solution-containing PCR chamber, a micro-heater, a detection unit detecting a PCR product signal based on the PCR solution, a plurality of modules, each of which includes the abovementioned elements in addition to a cooling fan and a control unit controlling the micro-heater and the cooling fan to adjust the temperature of the PCR chamber, a base instrument that comprises a power supply unit connected to the modules and a data communication unit connected to the control unit of each of the modules, and a display unit displaying data from the data communication unit, wherein the control unit of each of the modules independently controls at least one of both the detection unit and the temperature of the PCR chamber of the PCR tube in each of the modules.
    Type: Grant
    Filed: July 13, 2004
    Date of Patent: August 3, 2010
    Assignee: Samsung Electronics Co., Ltd.
    Inventors: Kwang-wook Oh, Jin-tae Kim, Kak Namkoong, Chin-sung Park
  • Patent number: 7764361
    Abstract: This invention relates to a system and method related to an epifluorescence microscope based optical system equipped with a tunable filter to localize microspheres in bead-based assays based on a back-scattered light (also known as reflected light) image. A common optical path for reflected and emitted luminescence in conjunction with a tunable filter negates the requirement of an additional sensor employed in existing technologies for localizing microspheres based on light scatter measurements.
    Type: Grant
    Filed: July 27, 2007
    Date of Patent: July 27, 2010
    Assignee: Northwestern University
    Inventors: David M. Kelso, Abhishek Mathur
  • Patent number: 7764378
    Abstract: A system and method for allowing adjustments of various parameters associated with the operation of charge-coupled devices adapted for use in biological analysis devices. Gate voltage signal applied to the CCDs can be adjusted to advantageously affect the manner in which charge is transferred from pixels. The manner in which transferred charges from the pixels are processed in a readout process can also be adjusted to advantageously change the speed of the CCD based detector. Various methods of performing such adjustments are disclosed.
    Type: Grant
    Filed: June 12, 2008
    Date of Patent: July 27, 2010
    Assignee: Applied Biosystems, LLC
    Inventor: Mark F. Oldham
  • Patent number: RE42090
    Abstract: Apparatus and methods are provided for sensing the presence of bright white paper on a conveyor of a paper sorting system. The conveyor is constantly illuminated with ultraviolet light. When bright white paper is present in the inspection zone of the conveyor, it will re-radiate fluorescent light energy as a result of the ultraviolet light. Periodically, the inspection zone of the conveyor is illuminated with a second light source in the visible light spectrum. Light is collected from the inspection zone of the conveyor, including reflected light from the secondary source and including emitted fluorescent light energy as a result of the ultraviolet light falling on bright white paper. Periodically a microprocessor associated with the sensor senses reflected light from the second source to determine whether any object if present on the conveyor. The microprocessor then senses the level of fluorescent light energy being emitted from any object on the conveyor.
    Type: Grant
    Filed: May 26, 2005
    Date of Patent: February 1, 2011
    Assignee: MSS, Inc.
    Inventors: Russell S. Bruner, David R. Morgan, Garry R. Kenny, Paul G. Gaddis, David Lee, James M. Roggow