Patents Represented by Attorney Sue S. Kalman
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Patent number: 8148168Abstract: The invention provides extraction columns for the purification of an analyte (e.g., a biological macromolecule, such as a peptide, protein or nucleic acid) from a sample solution, as well as methods for making and using such columns. The columns typically include a bed of extraction media positioned in the column, often between two frits. In some embodiments, the extraction columns employ modified pipette tips as column bodies. In some embodiments, the extraction columns are comprised of frits having a low pore. In some embodiments, the frits of the extraction columns have a pore volume of less than one microliter or less than 10% of the interstitial volume of the bed of extraction media.Type: GrantFiled: July 15, 2010Date of Patent: April 3, 2012Assignee: PhyNexus, Inc.Inventors: Douglas T. Gjerde, Allen Burge, Ronald Jones, Mark Abel
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Patent number: 8148169Abstract: The invention provides extraction columns for the purification of an analyte (e.g., a biological macromolecule, such as a peptide, protein or nucleic acid) from a sample solution, as well as methods for making and using such columns. The columns typically include a bed of extraction media positioned in the column between two frits. In some embodiments, the extraction columns employ modified pipette tips as column bodies. In some embodiments, the method involves adjusting the head pressure of the column during the process, or otherwise controlling or regulating the head pressure.Type: GrantFiled: April 21, 2011Date of Patent: April 3, 2012Assignee: PhyNexus, Inc.Inventors: Douglas T. Gjerde, Ronald Jones, Allen Burge
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Patent number: 8143071Abstract: The invention provides columns and methods for the purification and concentration of an analyte (e.g., a biological macromolecule, such as a peptide, protein or nucleic acid) from a sample solution. The columns typically include a bed of extraction medium positioned in the column between two frits. In some embodiments, the extraction columns employ modified pipette tips as column bodies. The invention also provides methods for purifying and concentrating multiple analytes simultaneously.Type: GrantFiled: December 21, 2007Date of Patent: March 27, 2012Assignee: PhyNexus, Inc.Inventor: Douglas T. Gjerde
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Patent number: 8105513Abstract: The present invention relates to a pipette tip which is fitted with a porous organic monolith which is doped with active particles. Due to a unique polymerization method, the extraction tips stay highly permeable which allows sample to pass through the monolithic bed. The extraction tip represents an ideal tool for solid phase extraction, especially for desalting, isolating and purifying biomolecules such as peptides and proteins.Type: GrantFiled: June 5, 2009Date of Patent: January 31, 2012Inventors: Alexander Bonn, Guenther Bonn, Christian Huck, Bernhard Maerk, Harald Sonderegger, Mathias Rainer, Douglas T. Gjerde
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Patent number: 8057668Abstract: The invention provides extraction columns for the purification of an analyte (e.g., a biological macromolecule, such as a peptide, protein or nucleic acid) from a sample solution, as well as methods for making and using such columns. The columns typically include a bed of extraction media positioned in the column between two frits. In some embodiments, the extraction columns employ modified pipette tips as column bodies. In some embodiments, the invention provides columns characterized by low backpressure.Type: GrantFiled: October 28, 2010Date of Patent: November 15, 2011Assignee: PhyNexus, Inc.Inventors: Douglas T. Gjerde, Christopher P. Hanna
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Patent number: 8053247Abstract: The invention provides methods and apparatus for automated sample preparation for MALDI-TOF MS using columns in combination with a liquid handling system. The samples are typically biological such as serum or urine. The columns typically include a bed of media positioned within a modified pipette tip. In some embodiments, the invention provides methods for storing the prepared samples.Type: GrantFiled: October 10, 2007Date of Patent: November 8, 2011Assignee: PhyNexus, Inc.Inventors: Isabel Feuerstein, Günther Bonn, Douglas T. Gjerde, Christian Huck, Guenther Stecher
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Patent number: 7943393Abstract: The invention provides extraction columns for the purification of an analyte (e.g., a biological macromolecule, such as a peptide, protein or nucleic acid) from a sample solution, as well as methods for making and using such columns. The columns typically include a bed of extraction media positioned in the column between two frits. In some embodiments, the extraction columns employ modified pipette tips as column bodies. In some embodiments, the method involves adjusting the head pressure of the column during the process, or otherwise controlling or regulating the head pressure.Type: GrantFiled: July 20, 2004Date of Patent: May 17, 2011Assignee: PhyNexus, Inc.Inventors: Douglas T. Gjerde, Ronald Jones, Allen Burge
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Patent number: 7879621Abstract: The invention provides, inter alia, methods, devices and reagents for the preparation of native and non-denatured biomolecules using solid-phase extraction channels. The invention is particularly suited for the purification, concentration and/or analysis of protein analytes. The invention further provides, inter alia, methods, devices and reagents for the purification, concentration and/or analysis of multi-protein complexes.Type: GrantFiled: December 10, 2003Date of Patent: February 1, 2011Assignee: PhyNexus, Inc.Inventors: Douglas T. Gjerde, Christopher T. Hanna
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Patent number: 7875462Abstract: The invention provides extraction columns for the purification of an analyte (e.g., a biological macromolecule, such as a peptide, protein or nucleic acid) from a sample solution, as well as methods for making and using such columns. The columns typically include a bed of extraction media positioned in the column, often between two frits. In some embodiments, the extraction columns employ modified pipette tips as column bodies. In some embodiments, the extraction columns are comprised of frits having a low pore. In some embodiments, the frits of the extraction columns have a pore volume of less than one microliter or less than 10% of the interstitial volume of the bed of extraction media.Type: GrantFiled: March 23, 2010Date of Patent: January 25, 2011Assignee: PhyNexus, Inc.Inventors: Douglas T. Gjerde, Allen Burge, Ronald Jones, Mark Abel
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Patent number: 7837871Abstract: The invention provides extraction columns for the purification of an analyte (e.g., a biological macromolecule, such as a peptide, protein or nucleic acid) from a sample solution, as well as methods for making and using such columns. The columns typically include a bed of extraction media positioned in the column between two frits. In some embodiments, the extraction columns employ modified pipette tips as column bodies. In some embodiments, the invention provides columns characterized by low backpressure.Type: GrantFiled: August 17, 2004Date of Patent: November 23, 2010Assignee: PhyNexus, Inc.Inventors: Douglas T. Gjerde, Christopher P. Hanna
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Patent number: 7722820Abstract: The invention provides extraction columns for the purification of an analyte (e.g., a biological macromolecule, such as a peptide, protein or nucleic acid) from a sample solution, as well as methods for making and using such columns. The columns typically include a bed of extraction media positioned in the column, often between two frits. In some embodiments, the extraction columns employ modified pipette tips as column bodies. In some embodiments, the invention provides methods characterized by the use of hydrophobic and/or hydrophilic membranes as frits, and/or by the inclusion of a wad of fibrous material to act as a wicking agent.Type: GrantFiled: November 21, 2005Date of Patent: May 25, 2010Assignee: PhyNexus, Inc.Inventors: Douglas T. Gjerde, Allen Burge, Ronald Jones, Mark Abel
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Patent number: 7488603Abstract: The invention provides extraction columns for the purification of an analyte (e.g., a biological macromolecule, such as a peptide, protein or nucleic acid) from a sample solution, as well as methods for making and using such columns. The columns typically include a bed of extraction media positioned in the column between two frits. In some embodiments, the extraction columns employ modified pipette tips as column bodies. In some embodiments, the invention provides methods characterized by the elution of analyte in a small volume of liquid.Type: GrantFiled: August 17, 2004Date of Patent: February 10, 2009Assignee: PhyNexus, Inc.Inventors: Douglas T. Gjerde, Christopher P. Hanna