Patents Represented by Attorney Sue S. Kalman
  • Patent number: 8148168
    Abstract: The invention provides extraction columns for the purification of an analyte (e.g., a biological macromolecule, such as a peptide, protein or nucleic acid) from a sample solution, as well as methods for making and using such columns. The columns typically include a bed of extraction media positioned in the column, often between two frits. In some embodiments, the extraction columns employ modified pipette tips as column bodies. In some embodiments, the extraction columns are comprised of frits having a low pore. In some embodiments, the frits of the extraction columns have a pore volume of less than one microliter or less than 10% of the interstitial volume of the bed of extraction media.
    Type: Grant
    Filed: July 15, 2010
    Date of Patent: April 3, 2012
    Assignee: PhyNexus, Inc.
    Inventors: Douglas T. Gjerde, Allen Burge, Ronald Jones, Mark Abel
  • Patent number: 8148169
    Abstract: The invention provides extraction columns for the purification of an analyte (e.g., a biological macromolecule, such as a peptide, protein or nucleic acid) from a sample solution, as well as methods for making and using such columns. The columns typically include a bed of extraction media positioned in the column between two frits. In some embodiments, the extraction columns employ modified pipette tips as column bodies. In some embodiments, the method involves adjusting the head pressure of the column during the process, or otherwise controlling or regulating the head pressure.
    Type: Grant
    Filed: April 21, 2011
    Date of Patent: April 3, 2012
    Assignee: PhyNexus, Inc.
    Inventors: Douglas T. Gjerde, Ronald Jones, Allen Burge
  • Patent number: 8143071
    Abstract: The invention provides columns and methods for the purification and concentration of an analyte (e.g., a biological macromolecule, such as a peptide, protein or nucleic acid) from a sample solution. The columns typically include a bed of extraction medium positioned in the column between two frits. In some embodiments, the extraction columns employ modified pipette tips as column bodies. The invention also provides methods for purifying and concentrating multiple analytes simultaneously.
    Type: Grant
    Filed: December 21, 2007
    Date of Patent: March 27, 2012
    Assignee: PhyNexus, Inc.
    Inventor: Douglas T. Gjerde
  • Patent number: 8105513
    Abstract: The present invention relates to a pipette tip which is fitted with a porous organic monolith which is doped with active particles. Due to a unique polymerization method, the extraction tips stay highly permeable which allows sample to pass through the monolithic bed. The extraction tip represents an ideal tool for solid phase extraction, especially for desalting, isolating and purifying biomolecules such as peptides and proteins.
    Type: Grant
    Filed: June 5, 2009
    Date of Patent: January 31, 2012
    Inventors: Alexander Bonn, Guenther Bonn, Christian Huck, Bernhard Maerk, Harald Sonderegger, Mathias Rainer, Douglas T. Gjerde
  • Patent number: 8057668
    Abstract: The invention provides extraction columns for the purification of an analyte (e.g., a biological macromolecule, such as a peptide, protein or nucleic acid) from a sample solution, as well as methods for making and using such columns. The columns typically include a bed of extraction media positioned in the column between two frits. In some embodiments, the extraction columns employ modified pipette tips as column bodies. In some embodiments, the invention provides columns characterized by low backpressure.
    Type: Grant
    Filed: October 28, 2010
    Date of Patent: November 15, 2011
    Assignee: PhyNexus, Inc.
    Inventors: Douglas T. Gjerde, Christopher P. Hanna
  • Patent number: 8053247
    Abstract: The invention provides methods and apparatus for automated sample preparation for MALDI-TOF MS using columns in combination with a liquid handling system. The samples are typically biological such as serum or urine. The columns typically include a bed of media positioned within a modified pipette tip. In some embodiments, the invention provides methods for storing the prepared samples.
    Type: Grant
    Filed: October 10, 2007
    Date of Patent: November 8, 2011
    Assignee: PhyNexus, Inc.
    Inventors: Isabel Feuerstein, Günther Bonn, Douglas T. Gjerde, Christian Huck, Guenther Stecher
  • Patent number: 7943393
    Abstract: The invention provides extraction columns for the purification of an analyte (e.g., a biological macromolecule, such as a peptide, protein or nucleic acid) from a sample solution, as well as methods for making and using such columns. The columns typically include a bed of extraction media positioned in the column between two frits. In some embodiments, the extraction columns employ modified pipette tips as column bodies. In some embodiments, the method involves adjusting the head pressure of the column during the process, or otherwise controlling or regulating the head pressure.
    Type: Grant
    Filed: July 20, 2004
    Date of Patent: May 17, 2011
    Assignee: PhyNexus, Inc.
    Inventors: Douglas T. Gjerde, Ronald Jones, Allen Burge
  • Patent number: 7879621
    Abstract: The invention provides, inter alia, methods, devices and reagents for the preparation of native and non-denatured biomolecules using solid-phase extraction channels. The invention is particularly suited for the purification, concentration and/or analysis of protein analytes. The invention further provides, inter alia, methods, devices and reagents for the purification, concentration and/or analysis of multi-protein complexes.
    Type: Grant
    Filed: December 10, 2003
    Date of Patent: February 1, 2011
    Assignee: PhyNexus, Inc.
    Inventors: Douglas T. Gjerde, Christopher T. Hanna
  • Patent number: 7875462
    Abstract: The invention provides extraction columns for the purification of an analyte (e.g., a biological macromolecule, such as a peptide, protein or nucleic acid) from a sample solution, as well as methods for making and using such columns. The columns typically include a bed of extraction media positioned in the column, often between two frits. In some embodiments, the extraction columns employ modified pipette tips as column bodies. In some embodiments, the extraction columns are comprised of frits having a low pore. In some embodiments, the frits of the extraction columns have a pore volume of less than one microliter or less than 10% of the interstitial volume of the bed of extraction media.
    Type: Grant
    Filed: March 23, 2010
    Date of Patent: January 25, 2011
    Assignee: PhyNexus, Inc.
    Inventors: Douglas T. Gjerde, Allen Burge, Ronald Jones, Mark Abel
  • Patent number: 7837871
    Abstract: The invention provides extraction columns for the purification of an analyte (e.g., a biological macromolecule, such as a peptide, protein or nucleic acid) from a sample solution, as well as methods for making and using such columns. The columns typically include a bed of extraction media positioned in the column between two frits. In some embodiments, the extraction columns employ modified pipette tips as column bodies. In some embodiments, the invention provides columns characterized by low backpressure.
    Type: Grant
    Filed: August 17, 2004
    Date of Patent: November 23, 2010
    Assignee: PhyNexus, Inc.
    Inventors: Douglas T. Gjerde, Christopher P. Hanna
  • Patent number: 7722820
    Abstract: The invention provides extraction columns for the purification of an analyte (e.g., a biological macromolecule, such as a peptide, protein or nucleic acid) from a sample solution, as well as methods for making and using such columns. The columns typically include a bed of extraction media positioned in the column, often between two frits. In some embodiments, the extraction columns employ modified pipette tips as column bodies. In some embodiments, the invention provides methods characterized by the use of hydrophobic and/or hydrophilic membranes as frits, and/or by the inclusion of a wad of fibrous material to act as a wicking agent.
    Type: Grant
    Filed: November 21, 2005
    Date of Patent: May 25, 2010
    Assignee: PhyNexus, Inc.
    Inventors: Douglas T. Gjerde, Allen Burge, Ronald Jones, Mark Abel
  • Patent number: 7488603
    Abstract: The invention provides extraction columns for the purification of an analyte (e.g., a biological macromolecule, such as a peptide, protein or nucleic acid) from a sample solution, as well as methods for making and using such columns. The columns typically include a bed of extraction media positioned in the column between two frits. In some embodiments, the extraction columns employ modified pipette tips as column bodies. In some embodiments, the invention provides methods characterized by the elution of analyte in a small volume of liquid.
    Type: Grant
    Filed: August 17, 2004
    Date of Patent: February 10, 2009
    Assignee: PhyNexus, Inc.
    Inventors: Douglas T. Gjerde, Christopher P. Hanna