Patents Assigned to Allen Institute
  • Patent number: 11307143
    Abstract: A system includes a light source to generate an optical signal having a set of pulses at a first repetition rate. The system also includes a multiplexer circuit to generate a multiplexed optical signal from the optical signal n sets of pulses at a second repetition rate, where the n sets of pulses have different polarization states and are at the first repetition rate. The system also includes a focusing unit to split the multiplexed optical signal into n excitation signals to excite a sample. The system also includes an objective to receive the n excitation signals and to illuminate the sample. The objective and the focusing unit collectively focus each excitation signal of the n excitation signals on a different focal plane of the sample to generate a response signal. The system also includes a demultiplexer circuit to generate n emission signals based on the response signal.
    Type: Grant
    Filed: June 12, 2020
    Date of Patent: April 19, 2022
    Assignee: Allen Institute
    Inventors: Dmitri Tsyboulski, Natalia Orlova, Jerome Anthony Lecoq, Peter Saggau
  • Publication number: 20210395780
    Abstract: Artificial expression constructs for selectively modulating gene expression in selected central nervous system cell types are described. The artificial expression constructs can be used to selectively express synthetic genes or modify gene expression in excitatory cortical neurons, such as primarily within cortical layers 2/3, 4, 5, and 6 and including those with extratelencephalic (ET) projections, intratelencephalic (IT) projections, and pyramidal tract (PT) projections, among others.
    Type: Application
    Filed: November 5, 2019
    Publication date: December 23, 2021
    Applicant: Allen Institute
    Inventors: Lucas T. Graybuck, Bosiljka Tasic, Tanya Daigle, Jonathan Ting, Hongkui Zeng, Brian Edward Kalmbach, John K. Mich, Erik Hess, Edward Sebastian Lein, Boaz P. Levi
  • Publication number: 20210348195
    Abstract: Artificial expression constructs for selectively modulating gene expression in selected central nervous system cell types are described. The artificial expression constructs can be used to selectively express synthetic genes or modify gene expression in GABAergic interneurons.
    Type: Application
    Filed: October 3, 2019
    Publication date: November 11, 2021
    Applicants: Allen Institute, Seattle Children's Hospital d/b/a Seattle Children's Research Institute
    Inventors: Jonathan Ting, Boaz P. Levi, John K. Mich, Edward Sebastian Lein, Franck Kalume
  • Patent number: 11030414
    Abstract: Systems, apparatuses, and methods for representing words or phrases, and using the representation to perform NLP and NLU tasks, where these tasks include sentiment analysis, question answering, and conference resolution. Embodiments introduce a type of deep contextualized word representation that models both complex characteristics of word use, and how these uses vary across linguistic contexts. The word vectors are learned functions of the internal states of a deep bidirectional language model (biLM), which is pre-trained on a large text corpus. These representations can be added to existing task models and significantly improve the state of the art across challenging NLP problems, including question answering, textual entailment and sentiment analysis.
    Type: Grant
    Filed: December 18, 2018
    Date of Patent: June 8, 2021
    Assignee: The Allen Institute for Artificial Intelligence
    Inventors: Matthew E. Peters, Mark Neumann, Mohit Iyyer, Matt Gardner, Christopher Clark, Kenton Lee, Luke Zettlemoyer
  • Patent number: 10935773
    Abstract: A computing device, method, system, and instructions in a non-transitory computer-readable medium for performing image analysis on 3D microscopy images to predict localization and/or labeling of various structures or objects of interest, by predicting the location in such images at which a dye or other marker associated with such structures would appear. The computing device, method, and system receives sets of 3D images that include unlabeled images, such as transmitted light images or electron microscope images, and labeled images, such as images captured with fluorescence tagging. The computing device trains a statistical model to associate structures in the labeled images with the same structures in the unlabeled light images. The processor further applies the statistical model to a new unlabeled image to generate a predictive labeled image that predicts the location of a structure of interest in the new image.
    Type: Grant
    Filed: August 8, 2018
    Date of Patent: March 2, 2021
    Assignee: Allen Institute
    Inventors: Gregory Johnson, Chawin Ounkomol, Forrest Collman, Sharmishtaa Seshamani
  • Publication number: 20210015898
    Abstract: Selectively providing voltage-gated sodium channel function sufficient to rescue impaired Nav1.1 function to inhibitory neurons is described. Provided voltage-gated sodium channel function sufficient to rescue impaired Nav1.1 function in inhibitory neurons can be used to treat disorders such as epilepsy, and more particularly, Dravet Syndrome.
    Type: Application
    Filed: April 9, 2019
    Publication date: January 21, 2021
    Applicants: ALLEN INSTITUTE, SEATTLE CHILDREN'S HOSPITAL D/B/A SEATTLE CHILDREN'S RESEARCH INSTITUTE
    Inventors: John K. Mich, Edward Sebastian Lein, Jonathan Ting, Boaz P. Levi, Erik Hess, Franck Kalume
  • Publication number: 20200309701
    Abstract: A system includes a light source to generate an optical signal having a set of pulses at a first repetition rate. The system also includes a multiplexer circuit to generate a multiplexed optical signal from the optical signal n sets of pulses at a second repetition rate, where the n sets of pulses have different polarization states and are at the first repetition rate. The system also includes a focusing unit to split the multiplexed optical signal into n excitation signals to excite a sample. The system also includes an objective to receive the n excitation signals and to illuminate the sample. The objective and the focusing unit collectively focus each excitation signal of the n excitation signals on a different focal plane of the sample to generate a response signal. The system also includes a demultiplexer circuit to generate n emission signals based on the response signal.
    Type: Application
    Filed: June 12, 2020
    Publication date: October 1, 2020
    Applicant: Allen Institute
    Inventors: Dmitri TSYBOULSKI, Natalia ORLOVA, Jerome Anthony LECOQ, Peter SAGGAU
  • Publication number: 20190384047
    Abstract: A computing device, method, system, and instructions in a non-transitory computer-readable medium for performing image analysis on 3D microscopy images to predict localization and/or labeling of various structures or objects of interest, by predicting the location in such images at which a dye or other marker associated with such structures would appear. The computing device, method, and system receives sets of 3D images that include unlabeled images, such as transmitted light images or electron microscope images, and labeled images, such as images captured with fluorescence tagging. The computing device trains a statistical model to associate structures in the labeled images with the same structures in the unlabeled light images. The processor further applies the statistical model to a new unlabeled image to generate a predictive labeled image that predicts the location of a structure of interest in the new image.
    Type: Application
    Filed: August 8, 2018
    Publication date: December 19, 2019
    Applicant: Allen Institute
    Inventors: Gregory JOHNSON, Chawin OUNKOMOL, Forrest COLLMAN, Sharmishtaa SESHAMANI