Abstract: The present invention relates to methods and compositions that include enzymes and/or binding polypeptides useful for protecting polymers from damage caused by fatty acids from secreted biological fluids such as sebum or sweat.
Type:
Grant
Filed:
September 12, 2018
Date of Patent:
June 14, 2022
Assignee:
Ginkgo Bioworks, Inc.
Inventors:
Patrick Magannig Boyle, Jeffrey Ian Boucher, Michael Gregory Napolitano
Abstract: DGA1 catalyzes the final enzymatic step for converting acyl-CoA and 1,2-diacylglycerol to triacylglycerols (TAG) and CoA in yeast. Disclosed are methods for expression in an oleaginous yeast host of polynucleotide sequences encoding DGA1 from Rhodosporidium toruloides, Lipomyces starkeyi, Aurantiochytrium limacinum, Aspergillus terreus, or Claviceps purpurea. Also described herein are engineered recombinant host cells of Yarrowia lipolytica comprising heterologous DGA1 polynucleotides encoding DGA1 proteins, or functionally active portions thereof, having the capability of producing increased lipid production and possessing the characteristic of enhanced glucose consumption efficiency.
Type:
Grant
Filed:
February 28, 2019
Date of Patent:
June 7, 2022
Assignee:
Ginkgo Bioworks, Inc.
Inventors:
Elena E. Brevnova, Arthur J. Shaw, IV, Emily H. Greenhagen
Abstract: Aspects of the disclosure relate to biosynthesis of cannabinoids and cannabinoid precursors in recombinant cells and in vitro.
Type:
Grant
Filed:
October 23, 2020
Date of Patent:
March 15, 2022
Assignee:
Ginkgo Bioworks, Inc.
Inventors:
Kim Cecelia Anderson, Elena Brevnova, Dylan Alexander Carlin, Brian Carvalho, Nicholas Flores, Katrina Forrest, Massimo Merighi, Gabriel Rodriguez, Emily E. Wrenbeck
Abstract: Disclosed herein are cells, nucleic acids, and proteins that can be used to produce branched (methyl)lipids, such as 10-methylstearic acids, and compositions that include such lipids. Cells disclosed herein comprise methyltransferase and/or reductase genes from bacteria of the class Gammaproteobacteria, which encode enzymes capable of catalyzing the production of branched (methyl)lipids from unbranched, unsaturated lipids. Saturated branched (methyl)lipids produced using embodiments of the present invention have favorable low-temperature fluidity and favorable oxidative stability, which are desirable properties for lubricants and specialty fluids.
Type:
Grant
Filed:
September 20, 2018
Date of Patent:
February 1, 2022
Assignee:
Ginkgo Bioworks, Inc.
Inventors:
Arthur J. Shaw, Hannah Blitzblau, Donald V. Crabtree
Abstract: Described in this application are enzymes (e.g., cucurbitadienol synthases (CDS), UDP-glycosyltransferases (UGT), C11 hydroxylases, epoxide hydrolases (EPH), squalene epoxidases, and/or cytochrome P450 reductases), host cells expressing the enzymes, and methods of producing mogrol precursors, mogrol, and/or mogrosides using such host cells.
Type:
Application
Filed:
November 9, 2019
Publication date:
December 30, 2021
Applicant:
Ginkgo Bioworks, Inc.
Inventors:
Kim Cecelia Anderson, Jeffrey Ian Boucher, Nicholas Flores, Jaide Jensen, Scott Marr, Matthew McMahon, Dayal Saran, Jue Wang, Jie Zhu
Abstract: The disclosure relates generally to the field of immune binding proteins and method for obtaining immune binding proteins from genomic or other sources. The disclosure also relates to anti-SARS-CoV-2 antibodies that have been obtained from subjects who became immune to this coronavirus, and to methods of using these anti-SARS-CoV-2 antibodies. Methods for neutralizing SARS-CoV-2 are disclosed, as well treatments for SARS-COV-2 using the anti-SARS-CoV-2 antibodies.
Type:
Application
Filed:
May 9, 2021
Publication date:
November 11, 2021
Applicant:
Augmenta Bioworks, Inc.
Inventors:
Christopher J. Emig, Rosanna Man Wah Chau, Payam Shahi, Kim-Xuan Nguyen, YuShuan Lai, Robin Emig, John Beaber, Steven Henry, Marco Antonio Mena
Abstract: Disclosed are genetically engineered organisms, such as yeast and bacteria, that have the ability to metabolize atypical nitrogen sources, such as melamine and cyanamide. Fermentation methods using the genetically engineered organisms are also described. The methods of the invention are robust processes for the industrial bioproduction of a variety of compounds, including commodities, fine chemicals, and pharmaceuticals.
Abstract: Described herein are chimeric terpene synthases, methods for making chimeric terpene synthases, and methods for making terpenes using the same.
Abstract: Nucleic acids and cells comprising a methyltransferase gene and/or a reductase gene are disclosed. These nucleic acids and cells may be used to produce branched (methyl)lipids, such as 10-methylstearate.
Type:
Grant
Filed:
October 25, 2019
Date of Patent:
April 13, 2021
Assignee:
Ginkgo Bioworks, Inc.
Inventors:
Arthur J. Shaw, Hannah Blitzblau, Donald V. Crabtree
Abstract: The present invention relates generally to the field of immune binding proteins and method for obtaining immune binding proteins from genomic or other sources. The present invention also relates to nucleic acids encoding the immune binding proteins in which the natural multimeric association of chains is maintained in the nucleic acids and the immune binding proteins made therefrom. For example nucleic acids encoding antibodies that are amplified from a B-cell using the methods of the invention maintain the natural pairing of heavy and light chains from the B-cell. This maintenance of pairing (or multimerization) produces libraries and/or repertoires of immune binding proteins that are enriched for useful binding molecules.
Abstract: Aspects of the disclosure relate to biosynthesis of cannabinoids and cannabinoid precursors in recombinant cells and in vitro.
Type:
Application
Filed:
October 23, 2020
Publication date:
March 11, 2021
Applicant:
Ginkgo Bioworks, Inc.
Inventors:
Kim Cecelia Anderson, Elena Brevnova, Dylan Alexander Carlin, Brian Carvalho, Nicholas Flores, Katrina Forrest, Matthew McMahon, Massimo Merighi, Gabriel Rodriguez, Emily E. Wrenbeck
Abstract: The present disclosure provides nucleic acids encoding a Large ATP-binding regulator of the LuxR family (LAL) of transcription factors, vectors and host cells including such nucleic acids, and methods for producing compounds (e.g., polyketides or ?-lactam compounds) with such nucleic acids, vectors, and/or host cells.
Type:
Grant
Filed:
April 12, 2017
Date of Patent:
February 2, 2021
Assignee:
Ginkgo Bioworks, Inc.
Inventors:
Brian R. Bowman, Joshua A. V. Blodgett, Gregory L. Verdine, Daniel C. Gray, Jay P. Morgenstern, Lucy Foulston, Keith Robison
Abstract: The present disclosure identifies pathways, mechanisms, systems and methods to confer chemoautotrophic production of carbon-based products of interest, such as sugars, alcohols, chemicals, amino acids, polymers, fatty acids and their derivatives, hydrocarbons, isoprenoids, and intermediates thereof, in organisms such that these organisms efficiently convert inorganic carbon to organic carbon-based products of interest using inorganic energy, such as formate, and in particular the use of organisms for the commercial production of various carbon-based products of interest.
Type:
Application
Filed:
July 30, 2020
Publication date:
January 14, 2021
Applicant:
Ginkgo Bioworks, Inc.
Inventors:
Curt R. Fischer, Austin J. Che, Reshma P. Shetty, Jason R. Kelly
Abstract: The present invention provides, among other things, methods, compositions and systems for highly efficient, robust, multiplex analysis of biomolecules based on substrate-mediated compartmentalization in conjunction with controlled release of assay reagents for interference-free detection of biomolecules.
Type:
Grant
Filed:
May 22, 2015
Date of Patent:
January 12, 2021
Assignee:
FIREFLY BIOWORKS, INC.
Inventors:
Isaac Stoner, Timothy Erps, Daniel Pregibon, Jessica Dawn Tytell, Andreas Windemuth, Graeme Doran
Abstract: The present invention relates generally to the field of immune binding proteins and method for obtaining immune binding proteins from genomic or other sources. The present invention also relates to nucleic acids encoding the immune binding proteins in which the natural multimeric association of chains is maintained in the nucleic acids and the immune binding proteins made therefrom. For example nucleic acids encoding antibodies that are amplified from a B-cell using the methods of the invention maintain the natural pairing of heavy and light chains from the B-cell. This maintenance of pairing (or multimerization) produces libraries and/or repertoires of immune binding proteins that are enriched for useful binding molecules.
Abstract: The present disclosure identifies pathways, mechanisms, systems and methods to confer chemoautotrophic production of carbon-based products of interest, such as sugars, alcohols, chemicals, amino acids, polymers, fatty acids and their derivatives, hydrocarbons, isoprenoids, and intermediates thereof, in organisms such that these organisms efficiently convert inorganic carbon to organic carbon-based products of interest using inorganic energy, such as formate, and in particular the use of organisms for the commercial production of various carbon-based products of interest.
Type:
Grant
Filed:
January 10, 2018
Date of Patent:
October 13, 2020
Assignee:
Ginkgo Bioworks, Inc.
Inventors:
Curt R. Fischer, Austin J. Che, Reshma P. Shetty, Jason R. Kelly
Abstract: The present invention relates generally to the field of immune binding proteins and method for obtaining immune binding proteins from genomic or other sources. The present invention also relates to methods and apparati for obtaining single cells that express immune binding proteins. The single cells expressing the immune binding proteins can be obtained from a patient that has had an effective immune response to a disease state (e.g., cancer or an infectious agent). The methods and apparati of the disclosure can be used to obtain immune cells that produce immune binding proteins responsible for the effective immune response. The methods and apparati of the disclosure can also be used to obtain cells that express a polypeptide (e.g., a receptor, a secreted protein, a cytokine, or a recombinant protein) or other factor of interest.
Type:
Application
Filed:
March 21, 2020
Publication date:
September 24, 2020
Applicant:
Augmenta Bioworks, Inc.
Inventors:
Marco Antonio Mena, Christopher J. Emig, Kim-Xuan Nguyen
Abstract: The present application is directed to antimicrobial compositions comprising chitosan polymers of at least two different average molecular weights (Mws), wherein the Mw of each different chitosan polymer is selected to target a different microorganism as well as method of making and using the compositions and product comprising the compositions.
Type:
Application
Filed:
September 7, 2018
Publication date:
September 10, 2020
Applicant:
Chinova Bioworks Inc.
Inventors:
David Brown, Tanzina Huq, Natasha Dhayagude
Abstract: The present invention relates to methods and compositions that include enzymes and/or binding polypeptides useful for protecting polymers from damage caused by fatty acids from secreted biological fluids such as sebum or sweat.
Type:
Application
Filed:
September 12, 2018
Publication date:
August 13, 2020
Applicant:
Ginkgo Bioworks, Inc.
Inventors:
Patrick Magannig Boyle, Jeffrey Ian Boucher, Michael Gregory Napolitano
Abstract: Described herein are immune binding proteins and method for obtaining immune binding proteins from genomic or other sources. Also described herein are nucleic acids encoding the immune binding proteins in which the natural multimeric association of chains is maintained in the nucleic acids and the immune binding proteins made therefrom. For example, nucleic acids encoding antibodies that are amplified from a B-cell using the methods described herein maintain the natural pairing of heavy and light chains from the B-cell. This maintenance of pairing (or multimerization) produces libraries and/or repertoires of immune binding proteins that are enriched for useful binding molecules.
Type:
Application
Filed:
October 9, 2019
Publication date:
April 16, 2020
Applicant:
Augmenta Bioworks, Inc.
Inventors:
Marco Antonio Mena, Christopher J. Emig, John Haliburton, Payam Shahi