Patents Assigned to BIOWORKS, INC.
  • Patent number: 11359182
    Abstract: The present invention relates to methods and compositions that include enzymes and/or binding polypeptides useful for protecting polymers from damage caused by fatty acids from secreted biological fluids such as sebum or sweat.
    Type: Grant
    Filed: September 12, 2018
    Date of Patent: June 14, 2022
    Assignee: Ginkgo Bioworks, Inc.
    Inventors: Patrick Magannig Boyle, Jeffrey Ian Boucher, Michael Gregory Napolitano
  • Patent number: 11352610
    Abstract: DGA1 catalyzes the final enzymatic step for converting acyl-CoA and 1,2-diacylglycerol to triacylglycerols (TAG) and CoA in yeast. Disclosed are methods for expression in an oleaginous yeast host of polynucleotide sequences encoding DGA1 from Rhodosporidium toruloides, Lipomyces starkeyi, Aurantiochytrium limacinum, Aspergillus terreus, or Claviceps purpurea. Also described herein are engineered recombinant host cells of Yarrowia lipolytica comprising heterologous DGA1 polynucleotides encoding DGA1 proteins, or functionally active portions thereof, having the capability of producing increased lipid production and possessing the characteristic of enhanced glucose consumption efficiency.
    Type: Grant
    Filed: February 28, 2019
    Date of Patent: June 7, 2022
    Assignee: Ginkgo Bioworks, Inc.
    Inventors: Elena E. Brevnova, Arthur J. Shaw, IV, Emily H. Greenhagen
  • Patent number: 11274320
    Abstract: Aspects of the disclosure relate to biosynthesis of cannabinoids and cannabinoid precursors in recombinant cells and in vitro.
    Type: Grant
    Filed: October 23, 2020
    Date of Patent: March 15, 2022
    Assignee: Ginkgo Bioworks, Inc.
    Inventors: Kim Cecelia Anderson, Elena Brevnova, Dylan Alexander Carlin, Brian Carvalho, Nicholas Flores, Katrina Forrest, Massimo Merighi, Gabriel Rodriguez, Emily E. Wrenbeck
  • Patent number: 11236373
    Abstract: Disclosed herein are cells, nucleic acids, and proteins that can be used to produce branched (methyl)lipids, such as 10-methylstearic acids, and compositions that include such lipids. Cells disclosed herein comprise methyltransferase and/or reductase genes from bacteria of the class Gammaproteobacteria, which encode enzymes capable of catalyzing the production of branched (methyl)lipids from unbranched, unsaturated lipids. Saturated branched (methyl)lipids produced using embodiments of the present invention have favorable low-temperature fluidity and favorable oxidative stability, which are desirable properties for lubricants and specialty fluids.
    Type: Grant
    Filed: September 20, 2018
    Date of Patent: February 1, 2022
    Assignee: Ginkgo Bioworks, Inc.
    Inventors: Arthur J. Shaw, Hannah Blitzblau, Donald V. Crabtree
  • Publication number: 20210403921
    Abstract: Described in this application are enzymes (e.g., cucurbitadienol synthases (CDS), UDP-glycosyltransferases (UGT), C11 hydroxylases, epoxide hydrolases (EPH), squalene epoxidases, and/or cytochrome P450 reductases), host cells expressing the enzymes, and methods of producing mogrol precursors, mogrol, and/or mogrosides using such host cells.
    Type: Application
    Filed: November 9, 2019
    Publication date: December 30, 2021
    Applicant: Ginkgo Bioworks, Inc.
    Inventors: Kim Cecelia Anderson, Jeffrey Ian Boucher, Nicholas Flores, Jaide Jensen, Scott Marr, Matthew McMahon, Dayal Saran, Jue Wang, Jie Zhu
  • Publication number: 20210347860
    Abstract: The disclosure relates generally to the field of immune binding proteins and method for obtaining immune binding proteins from genomic or other sources. The disclosure also relates to anti-SARS-CoV-2 antibodies that have been obtained from subjects who became immune to this coronavirus, and to methods of using these anti-SARS-CoV-2 antibodies. Methods for neutralizing SARS-CoV-2 are disclosed, as well treatments for SARS-COV-2 using the anti-SARS-CoV-2 antibodies.
    Type: Application
    Filed: May 9, 2021
    Publication date: November 11, 2021
    Applicant: Augmenta Bioworks, Inc.
    Inventors: Christopher J. Emig, Rosanna Man Wah Chau, Payam Shahi, Kim-Xuan Nguyen, YuShuan Lai, Robin Emig, John Beaber, Steven Henry, Marco Antonio Mena
  • Patent number: 11041162
    Abstract: Disclosed are genetically engineered organisms, such as yeast and bacteria, that have the ability to metabolize atypical nitrogen sources, such as melamine and cyanamide. Fermentation methods using the genetically engineered organisms are also described. The methods of the invention are robust processes for the industrial bioproduction of a variety of compounds, including commodities, fine chemicals, and pharmaceuticals.
    Type: Grant
    Filed: April 23, 2019
    Date of Patent: June 22, 2021
    Assignee: Ginkgo Bioworks, Inc.
    Inventors: Colin R. South, Arthur J. Shaw, IV
  • Publication number: 20210147880
    Abstract: Described herein are chimeric terpene synthases, methods for making chimeric terpene synthases, and methods for making terpenes using the same.
    Type: Application
    Filed: February 14, 2019
    Publication date: May 20, 2021
    Applicant: Ginkgo Bioworks, Inc.
    Inventors: Christian Ridley, Jue Wang, Scott Marr
  • Patent number: 10975398
    Abstract: Nucleic acids and cells comprising a methyltransferase gene and/or a reductase gene are disclosed. These nucleic acids and cells may be used to produce branched (methyl)lipids, such as 10-methylstearate.
    Type: Grant
    Filed: October 25, 2019
    Date of Patent: April 13, 2021
    Assignee: Ginkgo Bioworks, Inc.
    Inventors: Arthur J. Shaw, Hannah Blitzblau, Donald V. Crabtree
  • Publication number: 20210079380
    Abstract: The present invention relates generally to the field of immune binding proteins and method for obtaining immune binding proteins from genomic or other sources. The present invention also relates to nucleic acids encoding the immune binding proteins in which the natural multimeric association of chains is maintained in the nucleic acids and the immune binding proteins made therefrom. For example nucleic acids encoding antibodies that are amplified from a B-cell using the methods of the invention maintain the natural pairing of heavy and light chains from the B-cell. This maintenance of pairing (or multimerization) produces libraries and/or repertoires of immune binding proteins that are enriched for useful binding molecules.
    Type: Application
    Filed: November 24, 2020
    Publication date: March 18, 2021
    Applicant: Augmenta Bioworks, Inc.
    Inventors: Christopher J. Emig, Marco Mena
  • Publication number: 20210071209
    Abstract: Aspects of the disclosure relate to biosynthesis of cannabinoids and cannabinoid precursors in recombinant cells and in vitro.
    Type: Application
    Filed: October 23, 2020
    Publication date: March 11, 2021
    Applicant: Ginkgo Bioworks, Inc.
    Inventors: Kim Cecelia Anderson, Elena Brevnova, Dylan Alexander Carlin, Brian Carvalho, Nicholas Flores, Katrina Forrest, Matthew McMahon, Massimo Merighi, Gabriel Rodriguez, Emily E. Wrenbeck
  • Patent number: 10907188
    Abstract: The present disclosure provides nucleic acids encoding a Large ATP-binding regulator of the LuxR family (LAL) of transcription factors, vectors and host cells including such nucleic acids, and methods for producing compounds (e.g., polyketides or ?-lactam compounds) with such nucleic acids, vectors, and/or host cells.
    Type: Grant
    Filed: April 12, 2017
    Date of Patent: February 2, 2021
    Assignee: Ginkgo Bioworks, Inc.
    Inventors: Brian R. Bowman, Joshua A. V. Blodgett, Gregory L. Verdine, Daniel C. Gray, Jay P. Morgenstern, Lucy Foulston, Keith Robison
  • Publication number: 20210010037
    Abstract: The present disclosure identifies pathways, mechanisms, systems and methods to confer chemoautotrophic production of carbon-based products of interest, such as sugars, alcohols, chemicals, amino acids, polymers, fatty acids and their derivatives, hydrocarbons, isoprenoids, and intermediates thereof, in organisms such that these organisms efficiently convert inorganic carbon to organic carbon-based products of interest using inorganic energy, such as formate, and in particular the use of organisms for the commercial production of various carbon-based products of interest.
    Type: Application
    Filed: July 30, 2020
    Publication date: January 14, 2021
    Applicant: Ginkgo Bioworks, Inc.
    Inventors: Curt R. Fischer, Austin J. Che, Reshma P. Shetty, Jason R. Kelly
  • Patent number: 10890581
    Abstract: The present invention provides, among other things, methods, compositions and systems for highly efficient, robust, multiplex analysis of biomolecules based on substrate-mediated compartmentalization in conjunction with controlled release of assay reagents for interference-free detection of biomolecules.
    Type: Grant
    Filed: May 22, 2015
    Date of Patent: January 12, 2021
    Assignee: FIREFLY BIOWORKS, INC.
    Inventors: Isaac Stoner, Timothy Erps, Daniel Pregibon, Jessica Dawn Tytell, Andreas Windemuth, Graeme Doran
  • Patent number: 10858649
    Abstract: The present invention relates generally to the field of immune binding proteins and method for obtaining immune binding proteins from genomic or other sources. The present invention also relates to nucleic acids encoding the immune binding proteins in which the natural multimeric association of chains is maintained in the nucleic acids and the immune binding proteins made therefrom. For example nucleic acids encoding antibodies that are amplified from a B-cell using the methods of the invention maintain the natural pairing of heavy and light chains from the B-cell. This maintenance of pairing (or multimerization) produces libraries and/or repertoires of immune binding proteins that are enriched for useful binding molecules.
    Type: Grant
    Filed: September 14, 2017
    Date of Patent: December 8, 2020
    Assignee: Augmenta Bioworks, Inc.
    Inventors: Christopher J. Emig, Marco Mena
  • Patent number: 10801045
    Abstract: The present disclosure identifies pathways, mechanisms, systems and methods to confer chemoautotrophic production of carbon-based products of interest, such as sugars, alcohols, chemicals, amino acids, polymers, fatty acids and their derivatives, hydrocarbons, isoprenoids, and intermediates thereof, in organisms such that these organisms efficiently convert inorganic carbon to organic carbon-based products of interest using inorganic energy, such as formate, and in particular the use of organisms for the commercial production of various carbon-based products of interest.
    Type: Grant
    Filed: January 10, 2018
    Date of Patent: October 13, 2020
    Assignee: Ginkgo Bioworks, Inc.
    Inventors: Curt R. Fischer, Austin J. Che, Reshma P. Shetty, Jason R. Kelly
  • Publication number: 20200300861
    Abstract: The present invention relates generally to the field of immune binding proteins and method for obtaining immune binding proteins from genomic or other sources. The present invention also relates to methods and apparati for obtaining single cells that express immune binding proteins. The single cells expressing the immune binding proteins can be obtained from a patient that has had an effective immune response to a disease state (e.g., cancer or an infectious agent). The methods and apparati of the disclosure can be used to obtain immune cells that produce immune binding proteins responsible for the effective immune response. The methods and apparati of the disclosure can also be used to obtain cells that express a polypeptide (e.g., a receptor, a secreted protein, a cytokine, or a recombinant protein) or other factor of interest.
    Type: Application
    Filed: March 21, 2020
    Publication date: September 24, 2020
    Applicant: Augmenta Bioworks, Inc.
    Inventors: Marco Antonio Mena, Christopher J. Emig, Kim-Xuan Nguyen
  • Publication number: 20200281199
    Abstract: The present application is directed to antimicrobial compositions comprising chitosan polymers of at least two different average molecular weights (Mws), wherein the Mw of each different chitosan polymer is selected to target a different microorganism as well as method of making and using the compositions and product comprising the compositions.
    Type: Application
    Filed: September 7, 2018
    Publication date: September 10, 2020
    Applicant: Chinova Bioworks Inc.
    Inventors: David Brown, Tanzina Huq, Natasha Dhayagude
  • Publication number: 20200255809
    Abstract: The present invention relates to methods and compositions that include enzymes and/or binding polypeptides useful for protecting polymers from damage caused by fatty acids from secreted biological fluids such as sebum or sweat.
    Type: Application
    Filed: September 12, 2018
    Publication date: August 13, 2020
    Applicant: Ginkgo Bioworks, Inc.
    Inventors: Patrick Magannig Boyle, Jeffrey Ian Boucher, Michael Gregory Napolitano
  • Publication number: 20200116699
    Abstract: Described herein are immune binding proteins and method for obtaining immune binding proteins from genomic or other sources. Also described herein are nucleic acids encoding the immune binding proteins in which the natural multimeric association of chains is maintained in the nucleic acids and the immune binding proteins made therefrom. For example, nucleic acids encoding antibodies that are amplified from a B-cell using the methods described herein maintain the natural pairing of heavy and light chains from the B-cell. This maintenance of pairing (or multimerization) produces libraries and/or repertoires of immune binding proteins that are enriched for useful binding molecules.
    Type: Application
    Filed: October 9, 2019
    Publication date: April 16, 2020
    Applicant: Augmenta Bioworks, Inc.
    Inventors: Marco Antonio Mena, Christopher J. Emig, John Haliburton, Payam Shahi