Patents Assigned to Codon
  • Publication number: 20090296540
    Abstract: A method and apparatus for storing on a portable computer-readable medium, a study comprising at least one medical output produced by a medical modality and formatted in a standard medical format used by specialized computers configured for viewing outputs produced by medical modalities, and optionally labeling the portable computer-readable medium. The method includes receiving a transmission comprising the medical output that is formatted according to the standard medical format, at least temporarily storing the medical output as it is received in a buffer memory to be subsequently stored onto the portable computer-readable medium, and storing the medical output from the buffer memory onto the portable computer-readable medium.
    Type: Application
    Filed: November 26, 2008
    Publication date: December 3, 2009
    Applicant: Codonics, Inc.
    Inventors: Alan J. Gilbert, Richard M. Edwards, Stephen N. Mucher, Jeffrey L. Spencer, Gary W. Keefe, Christopher M. Tainer, Garvin Seto, Bret E. Orsburn, Peter O. Botten, Heidi Shaffer
  • Publication number: 20090136986
    Abstract: The invention provides methods and compositions relating to cells having altered functions, and the nucleic acids that impart those functions. Altered cellular function arises from in vivo directed recombination of genetic elements to yield a recombined nucleic acid. These methods and compositions may utilize altered host cells having altered recombination enzyme profiles and/or altered recombination sites. The invention involves in some aspects methods for assembling nucleic acid molecules, such as genomic DNA. Aspects of the invention also provide kits, compositions, devices, and systems for generating novel recombined nucleic acids and cells having altered cell function.
    Type: Application
    Filed: November 18, 2008
    Publication date: May 28, 2009
    Applicant: Codon Devices, Inc.
    Inventors: George Church, Brian M. Baynes
  • Publication number: 20090137408
    Abstract: A system and method for aiding in the design of molecular constructs is provided. A feature set associated with a molecular building block in a construct may be determined, wherein the feature set may comprise data indicative of third party rights that restrict use of the molecular segment or the lack of such rights. The method may include steps of defining a molecular structure for use in the construct; searching a database including a plurality of molecular structures and a plurality of rights, each right of the plurality of rights associated with each of the plurality of molecular structures; and displaying rights associated with the defined molecular structures in response to the search of said database.
    Type: Application
    Filed: July 24, 2008
    Publication date: May 28, 2009
    Applicant: Codon Devices, Inc.
    Inventor: Joseph M. Jacobson
  • Publication number: 20090087840
    Abstract: Certain aspects of the present invention provide methods for assembling nucleic acid molecules. Some embodiments involve analyzing nucleic acid sequences and determining appropriate assembly strategies based on the presence or absence of sequence features that are known or predicted to interfere with extension-based and/or ligation-based assembly techniques. Aspects of the invention also provide kits, compositions, devices, and systems for assembling synthetic nucleic acids using polymerase-based techniques, ligase-based techniques, or combinations thereof.
    Type: Application
    Filed: May 19, 2007
    Publication date: April 2, 2009
    Applicant: Codon Devices, Inc.
    Inventors: Brian M. Baynes, Brad Chapman, Lee Kamentsky
  • Publication number: 20090005264
    Abstract: Aspects of the invention provide compositions and methods for displaying engineered polypeptides on a cell surface. According to aspects of the invention, immobilized polypeptides can be screened to identify one or more variants having one or more functional or structural properties of interest. Aspects of the invention provide composition and methods for producing engineered protein or protein variants having a functional or a structural property of interest.
    Type: Application
    Filed: March 26, 2008
    Publication date: January 1, 2009
    Applicant: CODON DEVICES, INC.
    Inventors: James A. Rakestraw, Stan I. Letovsky, Shaun Lippow
  • Publication number: 20080287320
    Abstract: Aspects of the invention relate to the design and synthesis of nucleic acid libraries containing non-random mutations or variants. Aspects of the invention provide methods for assembling libraries containing high densities of predetermined variant sequences. Certain embodiments relate to the design and synthesis of nucleic acid libraries that express a predetermined polypeptide from a library of nucleic acids having silent sequence variants. Certain embodiments relate to the design and synthesis of nucleic acid libraries that express predetermined RNA variants that encode the same polypeptide sequence.
    Type: Application
    Filed: October 4, 2007
    Publication date: November 20, 2008
    Applicant: Codon Devices
    Inventors: Brian M. Baynes, Dasa Lipovsek, Subhayu Basu
  • Publication number: 20080118141
    Abstract: A printer receives a plurality of image sections and corresponding image headers from the host as an image concatenation command. The plurality of image sections store the plurality of image sections in a print queue. The printer creates a virtual canvas representing a full image size. The printer determines how many lines of uniform data are present in a top border and a bottom border of the plurality of image sections. A variable formatting module of the printer crops a bottom border of a first image section to create a cropped first image section and a top border of a last image section to create a cropped last image section. The variable formatting module creates a first image frame in the virtual canvas corresponding to the first image section minus the bottom border and a last image frame corresponding to the last image section minus the top border.
    Type: Application
    Filed: November 14, 2007
    Publication date: May 22, 2008
    Applicant: Codonics, Inc.
    Inventors: Erica Sommer, Jeremy Audino, Christopher Harley
  • Patent number: 7375737
    Abstract: A hard copy recording device for transferring images to media, the hard copy recording device including an engine, a controller, a first non-volatile memory, and a second non-volatile memory. The engine transfers images to the media in response to control signals. The controller provides the control signals to the engine based upon image data and a first non-volatile memory stores recording device system data accessible by processes executing at the controller. The second non-volatile memory stores a copy of selected portions of the recording device system data, the second non-volatile memory being detachably coupled to the hard copy recording device and capable of being coupled to a second hard copy recording device for downloading the selected portions of the recording device system data to the second hard copy recording device.
    Type: Grant
    Filed: July 26, 2007
    Date of Patent: May 20, 2008
    Assignee: Codonics, Inc.
    Inventors: Peter Botten, Michael Kolberg, Lawrence Srnka, Christopher Tainer, Joseph Miller, Peter Adam, James Bias
  • Publication number: 20080064610
    Abstract: Aspects of the invention relate to the design and synthesis of nucleic acid libraries. Certain embodiments relate to the design and synthesis of nucleic acid libraries that express polypeptides. In some embodiments, the invention provides methods for analyzing polypeptide sequences and identifying those that may confer undesirable properties in vivo (e.g., poor solubility, high immunogenicity, low stability, etc.). In some embodiments, the invention provides methods for synthesizing a library of nucleic acids having predetermined sequences (e.g., a library of nucleic acids that encode polypeptides having related sequences with predetermined sequence variations).
    Type: Application
    Filed: May 21, 2007
    Publication date: March 13, 2008
    Applicant: Codon Devices
    Inventors: Dasa Lipovsek, Brian Baynes
  • Patent number: 7264323
    Abstract: A multi-media printer includes an engine controller, a printhead controller, and a pulse activation table. The engine controller transmits a row of energy values. The printhead controller receives the row of energy values and transmits an activation signal. The activation signal is transmitted based on a comparison of an activating energy level for each pulse position in a pulse stream with the energy values in the row of energy values. Comparison logic performs the comparison and transmits an activation signal if the energy value for the row of energy values is greater than or equal to the activating energy level for the corresponding pulse positions.
    Type: Grant
    Filed: November 21, 2003
    Date of Patent: September 4, 2007
    Assignee: Codonics, Inc.
    Inventors: Christopher M. Tainer, Joseph A. Miller, Gary W. Keefe, Peter O. Botten, William F. Stevens, James C. Bias, Jeremy F. Audino
  • Publication number: 20070134044
    Abstract: A platen roller is placed in a fixture. A plurality of pressurizing rollers are placed in the fixture. At least one of the plurality of pressuring rollers applies a pressure to the platen roller to pre-age the roller. A platen roller is placed in a pressurized chamber. A hydrostatic pressure is applied to the platen roller to pre-age the roller. A pre-aging software program is executed to pre-age a platen roller. The printer is instructed to print a number of large format media prints. The printer is instructed to print a number of small format media prints. This cycling continues for either a pre-determined time or a threshold number of prints.
    Type: Application
    Filed: December 8, 2005
    Publication date: June 14, 2007
    Applicant: Codonics, Inc.
    Inventors: Robb Colbrunn, Scott Turk, Christopher Tainer, Pete Botten, Eric Lehuta, Lawrence Srnka
  • Publication number: 20070004041
    Abstract: The present invention provides recombination based methods for assembling nucleic acids. In certain aspects the present invention provides hierarchical assembly methods for producing genome sized polynucleotide constructs. The methods may be used for assembling large polynucleotide constructs, for synthesizing synthetic genomes, or for introducing a plurality of nucleotide changes throughout the genome of an organism. In another aspect, the invention provides cells having increased genomic stability. For example, cells comprising alterations in at least a substantial portion of the transposons in the genome are provided.
    Type: Application
    Filed: January 12, 2006
    Publication date: January 4, 2007
    Applicant: Codon Devices, Inc.
    Inventors: George Church, Brian Baynes, Edmund Pitcher
  • Patent number: 7116343
    Abstract: A printer capable of transferring images to different types of media is disclosed. Media sheets of different sizes and types may be dispensed through a single input path to a print station including a printhead and a platen. The printhead is adapted for transferring images to media using either a direct thermal or dye diffusion process. A capstan roller, platen roller, picker assemblies and kicker assemblies are driven by a single motor, allowing for substantial cost and space savings. Other features are directed to improving the quality of images using the direct thermal and dye diffusion processes.
    Type: Grant
    Filed: November 29, 2004
    Date of Patent: October 3, 2006
    Assignee: Codonics, Inc.
    Inventors: Peter Botten, Michael Kolberg, Lawrence Srnka, Christopher Tainer, Donald Rahe, Joseph Miller, Peter Adam, Robert Colbrunn, Vladimir Dzodzo, Kevin Roach, Owen Patton, Eric Lab, Neal Somos, James Bias
  • Publication number: 20050013796
    Abstract: An isolated chemokine is disclosed. The isolated chemokine is expressed preferentially in breast tissue or can be detected in breast milk. It includes from about 100 to about 132 amino acids, has a deduced molecular weight of from about 10 to about 16 kDa, and has a deduced isoionic point of from about pH 10.1 to about pH 10.7. Antibodies and binding portions thereof recognizing the subject chemokine and peptides which include the antigenic portions of the subject chemokines are described. DNA molecules which encode the subject chemokines as well as nucleic acid molecules which, under stringent conditions, hybridize to nucleic acid molecules encoding the subject chemokines or to a complement thereof are also disclosed.
    Type: Application
    Filed: May 17, 2004
    Publication date: January 20, 2005
    Applicant: Codon Diagnostics, LLC
    Inventors: Lawrence Papsidero, Lyn Dyster, Jana Frustaci
  • Patent number: 6825864
    Abstract: A printer capable of transferring images to different types of media is disclosed. Media sheets of different sizes and types may be dispensed through a single input path to a print station including a printhead and a platen. The printhead is adapted for transferring images to media using either a direct thermal or dye diffusion process. A capstan roller, platen roller, picker assemblies and kicker assemblies are driven by a single motor, allowing for substantial cost and space savings. Other features are directed to improving the quality of images using the direct thermal and dye diffusion processes.
    Type: Grant
    Filed: November 26, 2001
    Date of Patent: November 30, 2004
    Assignee: Codonics, Inc.
    Inventors: Peter Botten, Michael Kolberg, Lawrence Srnka, Christopher Tainer, Donald Rahe, Joseph Miller, Peter Adam, Robert Colbrunn, Vladimir Dzodzo, Kevin Roach, Owen Patton, Eric Lab, Neal Somos, James Bias
  • Patent number: 6723518
    Abstract: An isolated chemokine is disclosed. The isolated chemokine is expressed preferentially in breast tissue or can be detected in breast milk. It includes from about 100 to about 132 amino acids, has a deduced molecular weight of from about 10 to about 16 kDa, and has a deduced isoionic point of from about pH 10.1 to about pH 10.7. Antibodies and binding portions thereof recognizing the subject chemokine and peptides which include the antigenic portions of the subject chemokines are described. DNA molecules which encode the subject chemokines as well as nucleic acid molecules which, under stringent conditions, hybridize to nucleic acid molecules encoding the subject chemokines or to a complement thereof are also disclosed.
    Type: Grant
    Filed: April 13, 2001
    Date of Patent: April 20, 2004
    Assignee: Codon Diagnostics, LLC
    Inventors: Lawrence D. Papsidero, Lyn M. Dyster, Jana M. Frustaci
  • Publication number: 20030026777
    Abstract: An isolated chemokine is disclosed. The isolated chemokine is expressed preferentially in breast tissue or can be detected in breast milk. It includes from about 100 to about 132 amino acids, has a deduced molecular weight of from about 10 to about 16 kDa, and has a deduced isoionic point of from about pH 10.1 to about pH 10.7. Antibodies and binding portions thereof recognizing the subject chemokine and peptides which include the antigenic portions of the subject chemokines are described. DNA molecules which encode the subject chemokines as well as nucleic acid molecules which, under stringent conditions, hybridize to nucleic acid molecules encoding the subject chemokines or to a complement thereof are also disclosed.
    Type: Application
    Filed: April 13, 2001
    Publication date: February 6, 2003
    Applicant: Codon Diagnostics, LLC
    Inventors: Lawrence D. Papsidero, Lyn M. Dyster, Jana M. Frustaci
  • Patent number: 6426407
    Abstract: The invention relates to compositions of matter capable of serving as residues for specific binding of third strands to double-stranded complementary nucleic acids of any base-pair sequence.
    Type: Grant
    Filed: June 7, 1995
    Date of Patent: July 30, 2002
    Assignees: Codon Pharm., Princeton Univ.
    Inventors: Jacques R. Fresco, Bin Liu, Lynn C. Klotz
  • Publication number: 20020076710
    Abstract: An isolated chemokine is disclosed. The isolated chemokine is expressed preferentially in breast tissue or can be detected in breast milk. It includes from about 100 to about 132 amino acids, has a deduced molecular weight of from about 10 to about 16 kDa, and has a deduced isoionic point of from about pH 10.1 to about pH 10.7. Antibodies and binding portions thereof recognizing the subject chemokine and peptides which include the antigenic portions of the subject chemokines are described. DNA molecules which encode the subject chemokines as well as nucleic acid molecules which, under stringent conditions, hybridize to nucleic acid molecules encoding the subject chemokines or to a complement thereof are also disclosed.
    Type: Application
    Filed: April 13, 2001
    Publication date: June 20, 2002
    Applicant: Codon Diagnostics, LLC
    Inventors: Lawrence D. Papsidero, Lyn M. Dyster, Jana M. Frustaci
  • Patent number: 6306653
    Abstract: An isolated chemokine is disclosed. The isolated chemokine is expressed preferentially in breast tissue or can be detected in breast milk. It includes from about 100 to about 132 amino acids, has a deduced molecular weight of from about 10 to about 16 kDa, and has a deduced isoionic point of from about pH 10.1 to about pH 10.7. Antibodies and binding portions thereof recognizing the subject chemokine and peptides which include the antigenic portions of the subject chemokines are described. DNA molecules which encode the subject chemokines as well as nucleic acid molecules which, under stringent conditions, hybridize to nucleic acid molecules encoding the subject chemokines or to a complement thereof are also disclosed.
    Type: Grant
    Filed: September 3, 1998
    Date of Patent: October 23, 2001
    Assignee: Codon Diagnostics, LLC
    Inventors: Lawrence D. Papsidero, Lyn M. Dyster, Jana M. Frustaci