Patents Assigned to Codon
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Publication number: 20090296540Abstract: A method and apparatus for storing on a portable computer-readable medium, a study comprising at least one medical output produced by a medical modality and formatted in a standard medical format used by specialized computers configured for viewing outputs produced by medical modalities, and optionally labeling the portable computer-readable medium. The method includes receiving a transmission comprising the medical output that is formatted according to the standard medical format, at least temporarily storing the medical output as it is received in a buffer memory to be subsequently stored onto the portable computer-readable medium, and storing the medical output from the buffer memory onto the portable computer-readable medium.Type: ApplicationFiled: November 26, 2008Publication date: December 3, 2009Applicant: Codonics, Inc.Inventors: Alan J. Gilbert, Richard M. Edwards, Stephen N. Mucher, Jeffrey L. Spencer, Gary W. Keefe, Christopher M. Tainer, Garvin Seto, Bret E. Orsburn, Peter O. Botten, Heidi Shaffer
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Publication number: 20090136986Abstract: The invention provides methods and compositions relating to cells having altered functions, and the nucleic acids that impart those functions. Altered cellular function arises from in vivo directed recombination of genetic elements to yield a recombined nucleic acid. These methods and compositions may utilize altered host cells having altered recombination enzyme profiles and/or altered recombination sites. The invention involves in some aspects methods for assembling nucleic acid molecules, such as genomic DNA. Aspects of the invention also provide kits, compositions, devices, and systems for generating novel recombined nucleic acids and cells having altered cell function.Type: ApplicationFiled: November 18, 2008Publication date: May 28, 2009Applicant: Codon Devices, Inc.Inventors: George Church, Brian M. Baynes
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Publication number: 20090137408Abstract: A system and method for aiding in the design of molecular constructs is provided. A feature set associated with a molecular building block in a construct may be determined, wherein the feature set may comprise data indicative of third party rights that restrict use of the molecular segment or the lack of such rights. The method may include steps of defining a molecular structure for use in the construct; searching a database including a plurality of molecular structures and a plurality of rights, each right of the plurality of rights associated with each of the plurality of molecular structures; and displaying rights associated with the defined molecular structures in response to the search of said database.Type: ApplicationFiled: July 24, 2008Publication date: May 28, 2009Applicant: Codon Devices, Inc.Inventor: Joseph M. Jacobson
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Publication number: 20090087840Abstract: Certain aspects of the present invention provide methods for assembling nucleic acid molecules. Some embodiments involve analyzing nucleic acid sequences and determining appropriate assembly strategies based on the presence or absence of sequence features that are known or predicted to interfere with extension-based and/or ligation-based assembly techniques. Aspects of the invention also provide kits, compositions, devices, and systems for assembling synthetic nucleic acids using polymerase-based techniques, ligase-based techniques, or combinations thereof.Type: ApplicationFiled: May 19, 2007Publication date: April 2, 2009Applicant: Codon Devices, Inc.Inventors: Brian M. Baynes, Brad Chapman, Lee Kamentsky
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Publication number: 20090005264Abstract: Aspects of the invention provide compositions and methods for displaying engineered polypeptides on a cell surface. According to aspects of the invention, immobilized polypeptides can be screened to identify one or more variants having one or more functional or structural properties of interest. Aspects of the invention provide composition and methods for producing engineered protein or protein variants having a functional or a structural property of interest.Type: ApplicationFiled: March 26, 2008Publication date: January 1, 2009Applicant: CODON DEVICES, INC.Inventors: James A. Rakestraw, Stan I. Letovsky, Shaun Lippow
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Publication number: 20080287320Abstract: Aspects of the invention relate to the design and synthesis of nucleic acid libraries containing non-random mutations or variants. Aspects of the invention provide methods for assembling libraries containing high densities of predetermined variant sequences. Certain embodiments relate to the design and synthesis of nucleic acid libraries that express a predetermined polypeptide from a library of nucleic acids having silent sequence variants. Certain embodiments relate to the design and synthesis of nucleic acid libraries that express predetermined RNA variants that encode the same polypeptide sequence.Type: ApplicationFiled: October 4, 2007Publication date: November 20, 2008Applicant: Codon DevicesInventors: Brian M. Baynes, Dasa Lipovsek, Subhayu Basu
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Publication number: 20080118141Abstract: A printer receives a plurality of image sections and corresponding image headers from the host as an image concatenation command. The plurality of image sections store the plurality of image sections in a print queue. The printer creates a virtual canvas representing a full image size. The printer determines how many lines of uniform data are present in a top border and a bottom border of the plurality of image sections. A variable formatting module of the printer crops a bottom border of a first image section to create a cropped first image section and a top border of a last image section to create a cropped last image section. The variable formatting module creates a first image frame in the virtual canvas corresponding to the first image section minus the bottom border and a last image frame corresponding to the last image section minus the top border.Type: ApplicationFiled: November 14, 2007Publication date: May 22, 2008Applicant: Codonics, Inc.Inventors: Erica Sommer, Jeremy Audino, Christopher Harley
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Patent number: 7375737Abstract: A hard copy recording device for transferring images to media, the hard copy recording device including an engine, a controller, a first non-volatile memory, and a second non-volatile memory. The engine transfers images to the media in response to control signals. The controller provides the control signals to the engine based upon image data and a first non-volatile memory stores recording device system data accessible by processes executing at the controller. The second non-volatile memory stores a copy of selected portions of the recording device system data, the second non-volatile memory being detachably coupled to the hard copy recording device and capable of being coupled to a second hard copy recording device for downloading the selected portions of the recording device system data to the second hard copy recording device.Type: GrantFiled: July 26, 2007Date of Patent: May 20, 2008Assignee: Codonics, Inc.Inventors: Peter Botten, Michael Kolberg, Lawrence Srnka, Christopher Tainer, Joseph Miller, Peter Adam, James Bias
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Publication number: 20080064610Abstract: Aspects of the invention relate to the design and synthesis of nucleic acid libraries. Certain embodiments relate to the design and synthesis of nucleic acid libraries that express polypeptides. In some embodiments, the invention provides methods for analyzing polypeptide sequences and identifying those that may confer undesirable properties in vivo (e.g., poor solubility, high immunogenicity, low stability, etc.). In some embodiments, the invention provides methods for synthesizing a library of nucleic acids having predetermined sequences (e.g., a library of nucleic acids that encode polypeptides having related sequences with predetermined sequence variations).Type: ApplicationFiled: May 21, 2007Publication date: March 13, 2008Applicant: Codon DevicesInventors: Dasa Lipovsek, Brian Baynes
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Patent number: 7264323Abstract: A multi-media printer includes an engine controller, a printhead controller, and a pulse activation table. The engine controller transmits a row of energy values. The printhead controller receives the row of energy values and transmits an activation signal. The activation signal is transmitted based on a comparison of an activating energy level for each pulse position in a pulse stream with the energy values in the row of energy values. Comparison logic performs the comparison and transmits an activation signal if the energy value for the row of energy values is greater than or equal to the activating energy level for the corresponding pulse positions.Type: GrantFiled: November 21, 2003Date of Patent: September 4, 2007Assignee: Codonics, Inc.Inventors: Christopher M. Tainer, Joseph A. Miller, Gary W. Keefe, Peter O. Botten, William F. Stevens, James C. Bias, Jeremy F. Audino
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Publication number: 20070134044Abstract: A platen roller is placed in a fixture. A plurality of pressurizing rollers are placed in the fixture. At least one of the plurality of pressuring rollers applies a pressure to the platen roller to pre-age the roller. A platen roller is placed in a pressurized chamber. A hydrostatic pressure is applied to the platen roller to pre-age the roller. A pre-aging software program is executed to pre-age a platen roller. The printer is instructed to print a number of large format media prints. The printer is instructed to print a number of small format media prints. This cycling continues for either a pre-determined time or a threshold number of prints.Type: ApplicationFiled: December 8, 2005Publication date: June 14, 2007Applicant: Codonics, Inc.Inventors: Robb Colbrunn, Scott Turk, Christopher Tainer, Pete Botten, Eric Lehuta, Lawrence Srnka
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Publication number: 20070004041Abstract: The present invention provides recombination based methods for assembling nucleic acids. In certain aspects the present invention provides hierarchical assembly methods for producing genome sized polynucleotide constructs. The methods may be used for assembling large polynucleotide constructs, for synthesizing synthetic genomes, or for introducing a plurality of nucleotide changes throughout the genome of an organism. In another aspect, the invention provides cells having increased genomic stability. For example, cells comprising alterations in at least a substantial portion of the transposons in the genome are provided.Type: ApplicationFiled: January 12, 2006Publication date: January 4, 2007Applicant: Codon Devices, Inc.Inventors: George Church, Brian Baynes, Edmund Pitcher
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Patent number: 7116343Abstract: A printer capable of transferring images to different types of media is disclosed. Media sheets of different sizes and types may be dispensed through a single input path to a print station including a printhead and a platen. The printhead is adapted for transferring images to media using either a direct thermal or dye diffusion process. A capstan roller, platen roller, picker assemblies and kicker assemblies are driven by a single motor, allowing for substantial cost and space savings. Other features are directed to improving the quality of images using the direct thermal and dye diffusion processes.Type: GrantFiled: November 29, 2004Date of Patent: October 3, 2006Assignee: Codonics, Inc.Inventors: Peter Botten, Michael Kolberg, Lawrence Srnka, Christopher Tainer, Donald Rahe, Joseph Miller, Peter Adam, Robert Colbrunn, Vladimir Dzodzo, Kevin Roach, Owen Patton, Eric Lab, Neal Somos, James Bias
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Publication number: 20050013796Abstract: An isolated chemokine is disclosed. The isolated chemokine is expressed preferentially in breast tissue or can be detected in breast milk. It includes from about 100 to about 132 amino acids, has a deduced molecular weight of from about 10 to about 16 kDa, and has a deduced isoionic point of from about pH 10.1 to about pH 10.7. Antibodies and binding portions thereof recognizing the subject chemokine and peptides which include the antigenic portions of the subject chemokines are described. DNA molecules which encode the subject chemokines as well as nucleic acid molecules which, under stringent conditions, hybridize to nucleic acid molecules encoding the subject chemokines or to a complement thereof are also disclosed.Type: ApplicationFiled: May 17, 2004Publication date: January 20, 2005Applicant: Codon Diagnostics, LLCInventors: Lawrence Papsidero, Lyn Dyster, Jana Frustaci
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Patent number: 6825864Abstract: A printer capable of transferring images to different types of media is disclosed. Media sheets of different sizes and types may be dispensed through a single input path to a print station including a printhead and a platen. The printhead is adapted for transferring images to media using either a direct thermal or dye diffusion process. A capstan roller, platen roller, picker assemblies and kicker assemblies are driven by a single motor, allowing for substantial cost and space savings. Other features are directed to improving the quality of images using the direct thermal and dye diffusion processes.Type: GrantFiled: November 26, 2001Date of Patent: November 30, 2004Assignee: Codonics, Inc.Inventors: Peter Botten, Michael Kolberg, Lawrence Srnka, Christopher Tainer, Donald Rahe, Joseph Miller, Peter Adam, Robert Colbrunn, Vladimir Dzodzo, Kevin Roach, Owen Patton, Eric Lab, Neal Somos, James Bias
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Patent number: 6723518Abstract: An isolated chemokine is disclosed. The isolated chemokine is expressed preferentially in breast tissue or can be detected in breast milk. It includes from about 100 to about 132 amino acids, has a deduced molecular weight of from about 10 to about 16 kDa, and has a deduced isoionic point of from about pH 10.1 to about pH 10.7. Antibodies and binding portions thereof recognizing the subject chemokine and peptides which include the antigenic portions of the subject chemokines are described. DNA molecules which encode the subject chemokines as well as nucleic acid molecules which, under stringent conditions, hybridize to nucleic acid molecules encoding the subject chemokines or to a complement thereof are also disclosed.Type: GrantFiled: April 13, 2001Date of Patent: April 20, 2004Assignee: Codon Diagnostics, LLCInventors: Lawrence D. Papsidero, Lyn M. Dyster, Jana M. Frustaci
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Publication number: 20030026777Abstract: An isolated chemokine is disclosed. The isolated chemokine is expressed preferentially in breast tissue or can be detected in breast milk. It includes from about 100 to about 132 amino acids, has a deduced molecular weight of from about 10 to about 16 kDa, and has a deduced isoionic point of from about pH 10.1 to about pH 10.7. Antibodies and binding portions thereof recognizing the subject chemokine and peptides which include the antigenic portions of the subject chemokines are described. DNA molecules which encode the subject chemokines as well as nucleic acid molecules which, under stringent conditions, hybridize to nucleic acid molecules encoding the subject chemokines or to a complement thereof are also disclosed.Type: ApplicationFiled: April 13, 2001Publication date: February 6, 2003Applicant: Codon Diagnostics, LLCInventors: Lawrence D. Papsidero, Lyn M. Dyster, Jana M. Frustaci
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Patent number: 6426407Abstract: The invention relates to compositions of matter capable of serving as residues for specific binding of third strands to double-stranded complementary nucleic acids of any base-pair sequence.Type: GrantFiled: June 7, 1995Date of Patent: July 30, 2002Assignees: Codon Pharm., Princeton Univ.Inventors: Jacques R. Fresco, Bin Liu, Lynn C. Klotz
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Publication number: 20020076710Abstract: An isolated chemokine is disclosed. The isolated chemokine is expressed preferentially in breast tissue or can be detected in breast milk. It includes from about 100 to about 132 amino acids, has a deduced molecular weight of from about 10 to about 16 kDa, and has a deduced isoionic point of from about pH 10.1 to about pH 10.7. Antibodies and binding portions thereof recognizing the subject chemokine and peptides which include the antigenic portions of the subject chemokines are described. DNA molecules which encode the subject chemokines as well as nucleic acid molecules which, under stringent conditions, hybridize to nucleic acid molecules encoding the subject chemokines or to a complement thereof are also disclosed.Type: ApplicationFiled: April 13, 2001Publication date: June 20, 2002Applicant: Codon Diagnostics, LLCInventors: Lawrence D. Papsidero, Lyn M. Dyster, Jana M. Frustaci
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Patent number: 6306653Abstract: An isolated chemokine is disclosed. The isolated chemokine is expressed preferentially in breast tissue or can be detected in breast milk. It includes from about 100 to about 132 amino acids, has a deduced molecular weight of from about 10 to about 16 kDa, and has a deduced isoionic point of from about pH 10.1 to about pH 10.7. Antibodies and binding portions thereof recognizing the subject chemokine and peptides which include the antigenic portions of the subject chemokines are described. DNA molecules which encode the subject chemokines as well as nucleic acid molecules which, under stringent conditions, hybridize to nucleic acid molecules encoding the subject chemokines or to a complement thereof are also disclosed.Type: GrantFiled: September 3, 1998Date of Patent: October 23, 2001Assignee: Codon Diagnostics, LLCInventors: Lawrence D. Papsidero, Lyn M. Dyster, Jana M. Frustaci