Patents Assigned to Cold Spring Harbor Laboratories
  • Patent number: 8652777
    Abstract: The invention relates to a method for the analysis of ovarian cancer disorders, comprising determining the genomic methylation status of one or more CpG dinucleotides in a sequence selected from the group of sequences according to SEQ ID NO. 1 to 10 and/or SEQ ID NO. 50 to SEQ ID NO. 60. Optionally, additionally following steps are performed, the one or more results from the methylation status test is input into a classifier that is obtained from a Diagnostic Multi Variate Model, calculating a likelihood as to whether the sample is from a normal tissue or an ovarian cancer tissue and/or, calculating an associated p-value for the confidence in the prediction.
    Type: Grant
    Filed: September 16, 2008
    Date of Patent: February 18, 2014
    Assignees: Koninklijke Philips N.V., Cold Spring Harbor Laboratories
    Inventors: Sitharthan Kamalakaran, Robert Lucito, James Bruce Hicks
  • Publication number: 20120172238
    Abstract: The present invention relates to a method for assisting in diagnosing breast cancer and/or monitoring breast cancer progression in a given sample based on the analysis of differential DNA methylation patterns. More particularly, the method is directed to the identification of one or more epigenetic markers that derive from the application of a variety of statistical methods in order to point out the prognostic significance of the difference in methylation states at one or more genomic loci and predict whether the sample analyzed has a good or bad prognosis following treatment.
    Type: Application
    Filed: September 15, 2010
    Publication date: July 5, 2012
    Applicants: COLD SPRING HARBOR LABORATORIES, KONINKLIJKE PHILIPS ELECTRONICS N.V.
    Inventors: Vinay Varadan, Sitharthan Kamalakaran, James Bruce Hicks
  • Publication number: 20120004118
    Abstract: Provided is a method for the analysis of breast cancer disorders, comprising determining the genomic methylation status of one or more CpG dinucleotides. Furthermore, a computer program product stored on a computer-readable medium comprising software code adapted to perform the steps of the method when executed on a data-processing apparatus is provided. A device comprising means for supporting a clinician is also provided.
    Type: Application
    Filed: January 25, 2010
    Publication date: January 5, 2012
    Applicants: COLD SPRING HARBOR LABORATORIES, KONINKLIJKE PHILIPS ELECTRONICS N.V.
    Inventors: Sitharthan Kamalakaran, Angel Janevski, James Bruce Hicks
  • Publication number: 20100279879
    Abstract: Method for the analysis of breast cancer disorders, comprising determining the genomic methylation status of one or more CpG dinucleotides in a sequence selected from the group of sequences according to SEQ ID NO. 1 to 10 and/or SEQ ID NO. 50 to SEQ ID NO. 60. Optionally, additionally following steps are performed, the one or more results from the methylation status test is input into a classifier that is obtained from a Diagnostic Multi Variate Model, calculating a likelihood as to whether the sample is from a normal tissue or an breast cancer tissue and/or, calculating an associated p-value for the confidence in the prediction.
    Type: Application
    Filed: September 16, 2008
    Publication date: November 4, 2010
    Applicants: KONINKLIJKE PHILIPS ELECTRONICS N.V., COLD SPRING HARBOR LABORATORIES
    Inventors: Sitharthan Kamalakaran, Robert Lucito, James Bruce Hicks, Xiaoyue Zhao, Jude Kendall
  • Patent number: 5994074
    Abstract: Two previously undescribed human cdc25 genes, designated cdc25 A and cdc25 B, which have been shown to have an endogenous tyrosine phosphatase activity that can be specifically activated by B-type cyclin, in the complete absence of cdc2 are described. As a result of this work, new approaches to regulating the cell cycle in eukaryotic cells and, particularly, to regulating the activity of tyrosine specific phosphatases which play a key role in the cell cycle are available. Applicant's invention relates to methods of regulating the cell cycle and, specifically, to regulating activation of cdc2-kinase, through alteration of the activity and/or levels of tyrosine phosphatases or through alteration of the interaction of components of MPF. The present invention also relates to agents or compositions useful in the method of regulating (inhibiting or enhancing) the cell cycle.
    Type: Grant
    Filed: May 9, 1997
    Date of Patent: November 30, 1999
    Assignee: Cold Spring Harbor Laboratories
    Inventors: David H. Beach, Konstantin Galaktionov
  • Patent number: 5977305
    Abstract: Disclosed are methods for detecting mammalian genes encoding proteins which can function in microorganisms, particularly yeast, to modify, complement, or suppress a genetic defect associated with an identifiable phenotypic alteration or characteristic in the microorganism. Disclosed also are mammalian DNA sequences cloned by the above method, as well as polypeptide products of the expression of the DNA sequences in procaryotic or eucaryotic host cells and antibody substances which are specifically immunoreactive with said expression products. More specifically, the present invention relates to methods for cloning mammalian genes which encode products which modify, complement or suppress a genetic defect in a biochemical pathway in which cAMP participates or in a biochemical pathway which is controlled, directly or indirectly, by a RAS-related protein, to products (RNA, proteins) encoded by the mammalian genes cloned in this manner, and to antibodies which can bind the encoded proteins.
    Type: Grant
    Filed: June 7, 1995
    Date of Patent: November 2, 1999
    Assignee: Cold Spring Harbor Laboratories
    Inventors: Michael H. Wigler, John J. Colicelli
  • Patent number: 4762706
    Abstract: Antibodies exhibit specificity toward single amino acid differences between proteins. These antibodies may be produced by synthesizing a peptide of the appropriate amino acid sequence contained in the protein, immunizing a host with the peptide, and extracting sera from the host to obtain the antibodies. The antibodies and the desired protein are then immunoprecipitated under conditions of partial denaturation to expose the epitope of the protein. The antibodies may be used for diagnostic or therapeutic purposes.
    Type: Grant
    Filed: October 17, 1984
    Date of Patent: August 9, 1988
    Assignees: Cetus Corporation, Cold Spring Harbor Laboratories
    Inventors: Francis P. McCormick, Gail L. Wong, Robin Clark, Norman Arnheim, Danute E. Nitecki, James R. Feramisco