Patents Assigned to DNA Script
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Publication number: 20250002958Abstract: The present invention is directed to methods and kits for template-free enzymatic synthesis of polynucleotides that include or enable a step of efficiently cleaving the polynucleotide products from its initiator using an endonuclease V activity and initiator with a 3?-penultimate deoxyinosine.Type: ApplicationFiled: January 12, 2024Publication date: January 2, 2025Applicant: DNA ScriptInventor: Sandrine Creton
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Patent number: 12173333Abstract: The present invention relates to variant of Family A polymerases able to synthesize a nucleic acid fragment without template and to incorporate a reversible modified terminator nucleotide during the nucleic acid fragment synthesis. The present invention further relates to uses thereof for enzymatic synthesis of nucleic acid molecules.Type: GrantFiled: July 6, 2022Date of Patent: December 24, 2024Assignee: DNA ScriptInventors: Thomas Ybert, Elise Champion, Omar Vivar, Ahmed Said
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Patent number: 12163172Abstract: This disclosure relates to an enzymatic method of synthesizing a polynucleotide, comprising a deprotecting step which uses as a deprotecting agent a specific phosphonate compound. It also pertains to a method for deprotecting 3?-O-amino elongated fragments of a polynucleotide in an enzymatic method of synthesizing a polynucleotide, comprising contacting the elongated fragments with this phosphonate compound. This disclosure further relates to a kit for synthesizing a polynucleotide comprising one or more vials of synthesis reagents, at least one of which contains an effective amount of a phosphonate compound and to a specific method for preparing said phosphonate compound.Type: GrantFiled: May 3, 2024Date of Patent: December 10, 2024Assignee: DNA SCRIPTInventors: Ilya Aparin, Mikhael Soskine, Weidong Wu, Adeline Veillet
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Publication number: 20240368656Abstract: This disclosure relates to an enzymatic method of synthesizing a polynucleotide, comprising a deprotecting step which uses as a deprotecting agent a specific phosphonate compound. It also pertains to a method for deprotecting 3?-O-amino elongated fragments of a polynucleotide in an enzymatic method of synthesizing a polynucleotide, comprising contacting the elongated fragments with this phosphonate compound. This disclosure further relates to a kit for synthesizing a polynucleotide comprising one or more vials of synthesis reagents, at least one of which contains an effective amount of a phosphonate compound and to a specific method for preparing said phosphonate compound.Type: ApplicationFiled: May 3, 2024Publication date: November 7, 2024Applicant: DNA ScriptInventors: Ilya APARIN, Mikhael SOSKINE, Weidong WU, Adeline Veillet
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Patent number: 12071638Abstract: The present invention relates to variants of Terminal deoxynucleotidyl Transferase (TdT), each of which (i) has an amino acid sequence similarity to SEQ ID NO: 2. 11, 13, 15, 17, 19, 21, 23, 25, 27, 29, 31, 33 or 35 with corresponding amino acid substitutions, (ii) is capable of synthesizing a nucleic acid fragment without a template and (iii) is capable of incorporating a modified nucleotide into the nucleic acid fragment.Type: GrantFiled: December 7, 2021Date of Patent: August 27, 2024Assignees: DNA Script, Institut Pasteur, Centre National de la Recherche ScientifiqueInventors: Elise Champion, Mikhael Soskine, Thomas Ybert, Marc Delarue
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Patent number: 12065461Abstract: The invention relates to a method for preparing 3?-O-amino-2?-deoxyribonucleoside-5?-triphosphate. It also relates to a solid support functionalized with at least one N-hydroxyphthalimide moiety and uses thereof for protecting 3?-hydroxy group of a 2?-deoxyribonucleoside during synthesis of a nucleoside or a derivative thereof.Type: GrantFiled: August 29, 2019Date of Patent: August 20, 2024Assignees: DNA Script, Institut Pasteur, Centre National de la Recherche ScientifiqueInventors: Ivo Sarac, Marcel Hollenstein
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Patent number: 11993773Abstract: The invention is directed to methods for synthesizing oligonucleotides directly on biomolecules or cells living or fixed. In some embodiments, template-free enzymatic synthesis is implemented under biological conditions with successive cycles of (i) enzymatic addition of a 3?-O-blocked nucleoside triphosphate and (ii) enzymatic deblocking of the incorporated nucleotide to regenerate a free 3? hydroxyl. The invention has applications in single-cell cDNA library construction and analysis.Type: GrantFiled: March 4, 2021Date of Patent: May 28, 2024Assignee: DNA Script SASInventors: Xavier Godron, Adrian Horgan, Sylvain Gariel, Jeffrey Jeddeloh, Robert Nicol, Thomas Ybert
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Patent number: 11905541Abstract: The present invention is directed to methods and kits for template-free enzymatic synthesis of polynucleotides that include or enable a step of efficiently cleaving the polynucleotide products from its initiator using an endonuclease V activity and initiator with a 3?-penultimate deoxyinosine.Type: GrantFiled: June 10, 2022Date of Patent: February 20, 2024Assignee: DNA Script SASInventor: Sandrine Creton
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Patent number: 11859217Abstract: The present invention is directed to terminal deoxynucleotidyltransferase (TdT) variants that (i) comprise an amino acid sequence that is at least a specified percent identical to an indicated SEQ ID NOs and have at least one substitution at Q455 or at least Q455 plus at least one further substitution at G186, S248, T331, Q390, K394 or H466 (where positions are with respect to SEQ ID NO 1 and functionally equivalent positions in indicated SEQ ID NOs), (ii) are capable of template-free extension of a polynucleotide, and (iii) exhibit enhanced stability or enhanced efficiency in incorporating 3?-0-blocked nucleoside triphosphates into a polynucleotide. The invention is also directed to the use of these TdT variants for synthesizing polynucleotides of any predetermined sequence.Type: GrantFiled: November 13, 2019Date of Patent: January 2, 2024Assignee: DNA ScriptInventors: Elise Champion, Jéröme Loc'h, Mikhael Soskine, Elodie Sune
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Patent number: 11685941Abstract: The invention relates to a method for synthesising long nucleic acids, including at least one cycle of elongating initial fragments of nucleic acids, including a) a phase comprising the enzymatic addition of nucleotides to said fragments, b) a phase comprising the purification of the fragments having a correct sequence, c) an optional phase of enzymatic amplification, each cycle being performed in a reaction medium which is compatible with enzymatic addition and amplification, such as an aqueous medium, the synthesis method also comprising, at the end of all the elongation cycles, a last step of final amplification. The invention also relates to the use of the method for the production of genes, or sequences of synthetic nucleic acids, DNA or RNA. The invention further relates to a kit for implementing said method.Type: GrantFiled: October 14, 2020Date of Patent: June 27, 2023Assignee: DNA ScriptInventors: Thomas Ybert, Sylvain Gariel
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Patent number: 11661436Abstract: Methods for preparing 3?-O-amino-2?-deoxyribonucleoside-5?-triphosphates with reduced 3?-hydroxy-2?-deoxyribonucleoside-5?-triphosphate contamination by converting 3?-(N-acetone-oxime)-2?-deoxynucleoside triphosphate to 3?-O-amine-2?-deoxynucleoside triphosphate by treatment with an aryl-oxyamine and compositions produced therefrom.Type: GrantFiled: March 26, 2021Date of Patent: May 30, 2023Assignee: DNA SCRIPT SASInventors: Filip Wojciechowski, Thomas Ybert
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Publication number: 20230105977Abstract: The present invention is directed to methods and kits for template-free enzymatic synthesis of polynucleotides that include or enable a step of efficiently cleaving the polynucleotide products from its initiator using an endonuclease V activity and initiator with a 3?-penultimate deoxyinosine.Type: ApplicationFiled: June 10, 2022Publication date: April 6, 2023Applicant: DNA Script SASInventor: Sandrine Creton
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Publication number: 20220389048Abstract: The invention relates to a process for preparing a 3?-O-amino-ribonucleotide. It also relates to a compound of formula (III), and its use as a precursor for the synthesis of a 3?-O-amino-ribonucleotide. In formula (III), B is a nitrogenous base or a protected derivative thereof, G and G? are identical or different, and are a protecting group, and RN— is a phthalimido or an imino group.Type: ApplicationFiled: April 22, 2022Publication date: December 8, 2022Applicant: DNA Script SASInventors: Ivo SARAC, Cédric BARBOUX, Supaporn NIYOMCHON, Florent BEAUFILS, Martin BUESCHLEB
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Patent number: 11390856Abstract: The present invention relates to variant of Family A polymerases able to synthesize a nucleic acid fragment without template and to incorporate a reversible modified terminator nucleotide during the nucleic acid fragment synthesis. The present invention further relates to uses thereof for enzymatic synthesis of nucleic acid molecules.Type: GrantFiled: August 6, 2018Date of Patent: July 19, 2022Assignee: DNA ScriptInventors: Thomas Ybert, Elise Champion, Omar Vivar, Ahmed Said
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Publication number: 20220186213Abstract: The invention is directed to methods for synthesizing oligonucleotides direction on biomolecules or cells living or fixed. In some embodiments, template-free enzymatic synthesis is implemented under biological conditions with successive cycles of (i) enzymatic addition of a 3?-O-blocked nucleoside triphosphate and (ii) enzymatic deblocking of the incorporated nucleotide to regenerate a free 3? hydroxyl. The invention has applications in single-cell cDNA library construction and analysis.Type: ApplicationFiled: March 4, 2022Publication date: June 16, 2022Applicant: DNA Script SASInventors: Xavier Godron, Adrian Horgan, Sylvain Gariel, Jeffrey Jeddeloh, Robert Nicol, Thomas Ybert
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Patent number: 11359221Abstract: The present invention is directed to methods and kits for template-free enzymatic synthesis of polynucleotides that include or enable a step of efficiently cleaving the polynucleotide products from its initiator using endonuclease V activity and initiator with a 3?-penultimate deoxyinosine.Type: GrantFiled: February 11, 2020Date of Patent: June 14, 2022Assignee: DNA Script SASInventor: Sandrine Creton
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Patent number: 11312742Abstract: The invention relates to a process for preparing a 3?-O-amino-ribonucleotide. It also relates to a compound of formula (III), and its use as a precursor for the synthesis of a 3?-O-amino-ribonucleotide. In formula (III), B is a nitrogenous base or a protected derivative thereof, G and G? are identical or different, and are a protecting group, and RN— is a phthalimido or an imino group.Type: GrantFiled: February 13, 2020Date of Patent: April 26, 2022Assignee: DNA Script SASInventors: Ivo Sarac, Cédric Barboux, Supaporn Niyomchon, Florent Beaufils, Martin Bueschleb
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Patent number: 11268091Abstract: The invention is directed to methods for synthesizing oligonucleotides directly on biomolecules or cells living or fixed. In some embodiments, template-free enzymatic synthesis is implemented under biological conditions with successive cycles of (i) enzymatic addition of a 3?-O-blocked nucleoside triphosphate and (ii) enzymatic deblocking of the incorporated nucleotide to regenerate a free 3? hydroxyl. The invention has applications in single-cell cDNA library construction and analysis.Type: GrantFiled: December 10, 2019Date of Patent: March 8, 2022Assignee: DNA Script SASInventors: Xavier Godron, Adrian Horgan, Sylvain Gariel, Jeffrey Jeddeloh, Robert Nicol, Thomas Ybert
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Patent number: 11208637Abstract: The present invention relates to variants of Terminal deoxynucleotidyl Transferase (TdT), each of which (i) has an amino acid sequence similarity to SEQ ID NO: 2. 11, 13, 15, 17, 19, 21, 23, 25, 27, 29, 31, 33 or 35 with corresponding amino acid substitutions, (ii) is capable of synthesizing a nucleic acid fragment without a template and (iii) is capable of incorporating a modified nucleotide into the nucleic acid fragment.Type: GrantFiled: July 10, 2020Date of Patent: December 28, 2021Assignees: DNA Script SAS, Institut Pasteur, National Center for Scientific Research (CNRS)Inventors: Elise Champion, Mikhael Soskine, Thomas Ybert, Marc Delarue
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Publication number: 20210300961Abstract: Methods for preparing 3?-O-amino-2?-deoxyribonucleoside-5?-triphosphates with reduced 3?-hydroxy-2?-deoxyribonucleoside-5?-triphosphate contamination by converting 3?-(N-acetone-oxime)-2?-deoxynucleoside triphosphate to 3?-O-amine-2?-deoxynucleoside triphosphate by treatment with an aryl-oxyamine and compositions produced therefrom.Type: ApplicationFiled: March 26, 2021Publication date: September 30, 2021Applicant: DNA Script SASInventors: Filip WOJCIECHOWSKI, Thomas YBERT