Patents Assigned to DNA Script
  • Publication number: 20250002958
    Abstract: The present invention is directed to methods and kits for template-free enzymatic synthesis of polynucleotides that include or enable a step of efficiently cleaving the polynucleotide products from its initiator using an endonuclease V activity and initiator with a 3?-penultimate deoxyinosine.
    Type: Application
    Filed: January 12, 2024
    Publication date: January 2, 2025
    Applicant: DNA Script
    Inventor: Sandrine Creton
  • Patent number: 12173333
    Abstract: The present invention relates to variant of Family A polymerases able to synthesize a nucleic acid fragment without template and to incorporate a reversible modified terminator nucleotide during the nucleic acid fragment synthesis. The present invention further relates to uses thereof for enzymatic synthesis of nucleic acid molecules.
    Type: Grant
    Filed: July 6, 2022
    Date of Patent: December 24, 2024
    Assignee: DNA Script
    Inventors: Thomas Ybert, Elise Champion, Omar Vivar, Ahmed Said
  • Patent number: 12163172
    Abstract: This disclosure relates to an enzymatic method of synthesizing a polynucleotide, comprising a deprotecting step which uses as a deprotecting agent a specific phosphonate compound. It also pertains to a method for deprotecting 3?-O-amino elongated fragments of a polynucleotide in an enzymatic method of synthesizing a polynucleotide, comprising contacting the elongated fragments with this phosphonate compound. This disclosure further relates to a kit for synthesizing a polynucleotide comprising one or more vials of synthesis reagents, at least one of which contains an effective amount of a phosphonate compound and to a specific method for preparing said phosphonate compound.
    Type: Grant
    Filed: May 3, 2024
    Date of Patent: December 10, 2024
    Assignee: DNA SCRIPT
    Inventors: Ilya Aparin, Mikhael Soskine, Weidong Wu, Adeline Veillet
  • Publication number: 20240368656
    Abstract: This disclosure relates to an enzymatic method of synthesizing a polynucleotide, comprising a deprotecting step which uses as a deprotecting agent a specific phosphonate compound. It also pertains to a method for deprotecting 3?-O-amino elongated fragments of a polynucleotide in an enzymatic method of synthesizing a polynucleotide, comprising contacting the elongated fragments with this phosphonate compound. This disclosure further relates to a kit for synthesizing a polynucleotide comprising one or more vials of synthesis reagents, at least one of which contains an effective amount of a phosphonate compound and to a specific method for preparing said phosphonate compound.
    Type: Application
    Filed: May 3, 2024
    Publication date: November 7, 2024
    Applicant: DNA Script
    Inventors: Ilya APARIN, Mikhael SOSKINE, Weidong WU, Adeline Veillet
  • Patent number: 12071638
    Abstract: The present invention relates to variants of Terminal deoxynucleotidyl Transferase (TdT), each of which (i) has an amino acid sequence similarity to SEQ ID NO: 2. 11, 13, 15, 17, 19, 21, 23, 25, 27, 29, 31, 33 or 35 with corresponding amino acid substitutions, (ii) is capable of synthesizing a nucleic acid fragment without a template and (iii) is capable of incorporating a modified nucleotide into the nucleic acid fragment.
    Type: Grant
    Filed: December 7, 2021
    Date of Patent: August 27, 2024
    Assignees: DNA Script, Institut Pasteur, Centre National de la Recherche Scientifique
    Inventors: Elise Champion, Mikhael Soskine, Thomas Ybert, Marc Delarue
  • Patent number: 12065461
    Abstract: The invention relates to a method for preparing 3?-O-amino-2?-deoxyribonucleoside-5?-triphosphate. It also relates to a solid support functionalized with at least one N-hydroxyphthalimide moiety and uses thereof for protecting 3?-hydroxy group of a 2?-deoxyribonucleoside during synthesis of a nucleoside or a derivative thereof.
    Type: Grant
    Filed: August 29, 2019
    Date of Patent: August 20, 2024
    Assignees: DNA Script, Institut Pasteur, Centre National de la Recherche Scientifique
    Inventors: Ivo Sarac, Marcel Hollenstein
  • Patent number: 11993773
    Abstract: The invention is directed to methods for synthesizing oligonucleotides directly on biomolecules or cells living or fixed. In some embodiments, template-free enzymatic synthesis is implemented under biological conditions with successive cycles of (i) enzymatic addition of a 3?-O-blocked nucleoside triphosphate and (ii) enzymatic deblocking of the incorporated nucleotide to regenerate a free 3? hydroxyl. The invention has applications in single-cell cDNA library construction and analysis.
    Type: Grant
    Filed: March 4, 2021
    Date of Patent: May 28, 2024
    Assignee: DNA Script SAS
    Inventors: Xavier Godron, Adrian Horgan, Sylvain Gariel, Jeffrey Jeddeloh, Robert Nicol, Thomas Ybert
  • Patent number: 11905541
    Abstract: The present invention is directed to methods and kits for template-free enzymatic synthesis of polynucleotides that include or enable a step of efficiently cleaving the polynucleotide products from its initiator using an endonuclease V activity and initiator with a 3?-penultimate deoxyinosine.
    Type: Grant
    Filed: June 10, 2022
    Date of Patent: February 20, 2024
    Assignee: DNA Script SAS
    Inventor: Sandrine Creton
  • Patent number: 11859217
    Abstract: The present invention is directed to terminal deoxynucleotidyltransferase (TdT) variants that (i) comprise an amino acid sequence that is at least a specified percent identical to an indicated SEQ ID NOs and have at least one substitution at Q455 or at least Q455 plus at least one further substitution at G186, S248, T331, Q390, K394 or H466 (where positions are with respect to SEQ ID NO 1 and functionally equivalent positions in indicated SEQ ID NOs), (ii) are capable of template-free extension of a polynucleotide, and (iii) exhibit enhanced stability or enhanced efficiency in incorporating 3?-0-blocked nucleoside triphosphates into a polynucleotide. The invention is also directed to the use of these TdT variants for synthesizing polynucleotides of any predetermined sequence.
    Type: Grant
    Filed: November 13, 2019
    Date of Patent: January 2, 2024
    Assignee: DNA Script
    Inventors: Elise Champion, Jéröme Loc'h, Mikhael Soskine, Elodie Sune
  • Patent number: 11685941
    Abstract: The invention relates to a method for synthesising long nucleic acids, including at least one cycle of elongating initial fragments of nucleic acids, including a) a phase comprising the enzymatic addition of nucleotides to said fragments, b) a phase comprising the purification of the fragments having a correct sequence, c) an optional phase of enzymatic amplification, each cycle being performed in a reaction medium which is compatible with enzymatic addition and amplification, such as an aqueous medium, the synthesis method also comprising, at the end of all the elongation cycles, a last step of final amplification. The invention also relates to the use of the method for the production of genes, or sequences of synthetic nucleic acids, DNA or RNA. The invention further relates to a kit for implementing said method.
    Type: Grant
    Filed: October 14, 2020
    Date of Patent: June 27, 2023
    Assignee: DNA Script
    Inventors: Thomas Ybert, Sylvain Gariel
  • Patent number: 11661436
    Abstract: Methods for preparing 3?-O-amino-2?-deoxyribonucleoside-5?-triphosphates with reduced 3?-hydroxy-2?-deoxyribonucleoside-5?-triphosphate contamination by converting 3?-(N-acetone-oxime)-2?-deoxynucleoside triphosphate to 3?-O-amine-2?-deoxynucleoside triphosphate by treatment with an aryl-oxyamine and compositions produced therefrom.
    Type: Grant
    Filed: March 26, 2021
    Date of Patent: May 30, 2023
    Assignee: DNA SCRIPT SAS
    Inventors: Filip Wojciechowski, Thomas Ybert
  • Publication number: 20230105977
    Abstract: The present invention is directed to methods and kits for template-free enzymatic synthesis of polynucleotides that include or enable a step of efficiently cleaving the polynucleotide products from its initiator using an endonuclease V activity and initiator with a 3?-penultimate deoxyinosine.
    Type: Application
    Filed: June 10, 2022
    Publication date: April 6, 2023
    Applicant: DNA Script SAS
    Inventor: Sandrine Creton
  • Publication number: 20220389048
    Abstract: The invention relates to a process for preparing a 3?-O-amino-ribonucleotide. It also relates to a compound of formula (III), and its use as a precursor for the synthesis of a 3?-O-amino-ribonucleotide. In formula (III), B is a nitrogenous base or a protected derivative thereof, G and G? are identical or different, and are a protecting group, and RN— is a phthalimido or an imino group.
    Type: Application
    Filed: April 22, 2022
    Publication date: December 8, 2022
    Applicant: DNA Script SAS
    Inventors: Ivo SARAC, Cédric BARBOUX, Supaporn NIYOMCHON, Florent BEAUFILS, Martin BUESCHLEB
  • Patent number: 11390856
    Abstract: The present invention relates to variant of Family A polymerases able to synthesize a nucleic acid fragment without template and to incorporate a reversible modified terminator nucleotide during the nucleic acid fragment synthesis. The present invention further relates to uses thereof for enzymatic synthesis of nucleic acid molecules.
    Type: Grant
    Filed: August 6, 2018
    Date of Patent: July 19, 2022
    Assignee: DNA Script
    Inventors: Thomas Ybert, Elise Champion, Omar Vivar, Ahmed Said
  • Publication number: 20220186213
    Abstract: The invention is directed to methods for synthesizing oligonucleotides direction on biomolecules or cells living or fixed. In some embodiments, template-free enzymatic synthesis is implemented under biological conditions with successive cycles of (i) enzymatic addition of a 3?-O-blocked nucleoside triphosphate and (ii) enzymatic deblocking of the incorporated nucleotide to regenerate a free 3? hydroxyl. The invention has applications in single-cell cDNA library construction and analysis.
    Type: Application
    Filed: March 4, 2022
    Publication date: June 16, 2022
    Applicant: DNA Script SAS
    Inventors: Xavier Godron, Adrian Horgan, Sylvain Gariel, Jeffrey Jeddeloh, Robert Nicol, Thomas Ybert
  • Patent number: 11359221
    Abstract: The present invention is directed to methods and kits for template-free enzymatic synthesis of polynucleotides that include or enable a step of efficiently cleaving the polynucleotide products from its initiator using endonuclease V activity and initiator with a 3?-penultimate deoxyinosine.
    Type: Grant
    Filed: February 11, 2020
    Date of Patent: June 14, 2022
    Assignee: DNA Script SAS
    Inventor: Sandrine Creton
  • Patent number: 11312742
    Abstract: The invention relates to a process for preparing a 3?-O-amino-ribonucleotide. It also relates to a compound of formula (III), and its use as a precursor for the synthesis of a 3?-O-amino-ribonucleotide. In formula (III), B is a nitrogenous base or a protected derivative thereof, G and G? are identical or different, and are a protecting group, and RN— is a phthalimido or an imino group.
    Type: Grant
    Filed: February 13, 2020
    Date of Patent: April 26, 2022
    Assignee: DNA Script SAS
    Inventors: Ivo Sarac, Cédric Barboux, Supaporn Niyomchon, Florent Beaufils, Martin Bueschleb
  • Patent number: 11268091
    Abstract: The invention is directed to methods for synthesizing oligonucleotides directly on biomolecules or cells living or fixed. In some embodiments, template-free enzymatic synthesis is implemented under biological conditions with successive cycles of (i) enzymatic addition of a 3?-O-blocked nucleoside triphosphate and (ii) enzymatic deblocking of the incorporated nucleotide to regenerate a free 3? hydroxyl. The invention has applications in single-cell cDNA library construction and analysis.
    Type: Grant
    Filed: December 10, 2019
    Date of Patent: March 8, 2022
    Assignee: DNA Script SAS
    Inventors: Xavier Godron, Adrian Horgan, Sylvain Gariel, Jeffrey Jeddeloh, Robert Nicol, Thomas Ybert
  • Patent number: 11208637
    Abstract: The present invention relates to variants of Terminal deoxynucleotidyl Transferase (TdT), each of which (i) has an amino acid sequence similarity to SEQ ID NO: 2. 11, 13, 15, 17, 19, 21, 23, 25, 27, 29, 31, 33 or 35 with corresponding amino acid substitutions, (ii) is capable of synthesizing a nucleic acid fragment without a template and (iii) is capable of incorporating a modified nucleotide into the nucleic acid fragment.
    Type: Grant
    Filed: July 10, 2020
    Date of Patent: December 28, 2021
    Assignees: DNA Script SAS, Institut Pasteur, National Center for Scientific Research (CNRS)
    Inventors: Elise Champion, Mikhael Soskine, Thomas Ybert, Marc Delarue
  • Publication number: 20210300961
    Abstract: Methods for preparing 3?-O-amino-2?-deoxyribonucleoside-5?-triphosphates with reduced 3?-hydroxy-2?-deoxyribonucleoside-5?-triphosphate contamination by converting 3?-(N-acetone-oxime)-2?-deoxynucleoside triphosphate to 3?-O-amine-2?-deoxynucleoside triphosphate by treatment with an aryl-oxyamine and compositions produced therefrom.
    Type: Application
    Filed: March 26, 2021
    Publication date: September 30, 2021
    Applicant: DNA Script SAS
    Inventors: Filip WOJCIECHOWSKI, Thomas YBERT