Patents Assigned to DNA Script SAS
  • Patent number: 12371680
    Abstract: The present invention is directed to terminal deoxynucleotidyltransferase (TdT) variants that (i) comprise an amino acid sequence that is at least a specified percent identical to an indicated SEQ ID NOs and have at least one substitution at Q455 or at least Q455 plus at least one further substitution at G186, S248, T331, Q390, K394 or H466 (where positions are with respect to SEQ ID NO 1 and functionally equivalent positions in indicated SEQ ID NOs), (ii) are capable of template-free extension of a polynucleotide, and (iii) exhibit enhanced stability or enhanced efficiency in incorporating 3?-0-blocked nucleoside triphosphates into a polynucleotide. The invention is also directed to the use of these TdT variants for synthesizing polynucleotides of any predetermined sequence.
    Type: Grant
    Filed: November 7, 2023
    Date of Patent: July 29, 2025
    Assignee: DNA Script SAS
    Inventors: Elise Champion, Jérôme Loc'h, Mikhael Soskine, Elodie Sune
  • Patent number: 11993773
    Abstract: The invention is directed to methods for synthesizing oligonucleotides directly on biomolecules or cells living or fixed. In some embodiments, template-free enzymatic synthesis is implemented under biological conditions with successive cycles of (i) enzymatic addition of a 3?-O-blocked nucleoside triphosphate and (ii) enzymatic deblocking of the incorporated nucleotide to regenerate a free 3? hydroxyl. The invention has applications in single-cell cDNA library construction and analysis.
    Type: Grant
    Filed: March 4, 2021
    Date of Patent: May 28, 2024
    Assignee: DNA Script SAS
    Inventors: Xavier Godron, Adrian Horgan, Sylvain Gariel, Jeffrey Jeddeloh, Robert Nicol, Thomas Ybert
  • Patent number: 11905541
    Abstract: The present invention is directed to methods and kits for template-free enzymatic synthesis of polynucleotides that include or enable a step of efficiently cleaving the polynucleotide products from its initiator using an endonuclease V activity and initiator with a 3?-penultimate deoxyinosine.
    Type: Grant
    Filed: June 10, 2022
    Date of Patent: February 20, 2024
    Assignee: DNA Script SAS
    Inventor: Sandrine Creton
  • Patent number: 11661436
    Abstract: Methods for preparing 3?-O-amino-2?-deoxyribonucleoside-5?-triphosphates with reduced 3?-hydroxy-2?-deoxyribonucleoside-5?-triphosphate contamination by converting 3?-(N-acetone-oxime)-2?-deoxynucleoside triphosphate to 3?-O-amine-2?-deoxynucleoside triphosphate by treatment with an aryl-oxyamine and compositions produced therefrom.
    Type: Grant
    Filed: March 26, 2021
    Date of Patent: May 30, 2023
    Assignee: DNA SCRIPT SAS
    Inventors: Filip Wojciechowski, Thomas Ybert
  • Publication number: 20230105977
    Abstract: The present invention is directed to methods and kits for template-free enzymatic synthesis of polynucleotides that include or enable a step of efficiently cleaving the polynucleotide products from its initiator using an endonuclease V activity and initiator with a 3?-penultimate deoxyinosine.
    Type: Application
    Filed: June 10, 2022
    Publication date: April 6, 2023
    Applicant: DNA Script SAS
    Inventor: Sandrine Creton
  • Publication number: 20220389048
    Abstract: The invention relates to a process for preparing a 3?-O-amino-ribonucleotide. It also relates to a compound of formula (III), and its use as a precursor for the synthesis of a 3?-O-amino-ribonucleotide. In formula (III), B is a nitrogenous base or a protected derivative thereof, G and G? are identical or different, and are a protecting group, and RN— is a phthalimido or an imino group.
    Type: Application
    Filed: April 22, 2022
    Publication date: December 8, 2022
    Applicant: DNA Script SAS
    Inventors: Ivo SARAC, Cédric BARBOUX, Supaporn NIYOMCHON, Florent BEAUFILS, Martin BUESCHLEB
  • Publication number: 20220186213
    Abstract: The invention is directed to methods for synthesizing oligonucleotides direction on biomolecules or cells living or fixed. In some embodiments, template-free enzymatic synthesis is implemented under biological conditions with successive cycles of (i) enzymatic addition of a 3?-O-blocked nucleoside triphosphate and (ii) enzymatic deblocking of the incorporated nucleotide to regenerate a free 3? hydroxyl. The invention has applications in single-cell cDNA library construction and analysis.
    Type: Application
    Filed: March 4, 2022
    Publication date: June 16, 2022
    Applicant: DNA Script SAS
    Inventors: Xavier Godron, Adrian Horgan, Sylvain Gariel, Jeffrey Jeddeloh, Robert Nicol, Thomas Ybert
  • Patent number: 11359221
    Abstract: The present invention is directed to methods and kits for template-free enzymatic synthesis of polynucleotides that include or enable a step of efficiently cleaving the polynucleotide products from its initiator using endonuclease V activity and initiator with a 3?-penultimate deoxyinosine.
    Type: Grant
    Filed: February 11, 2020
    Date of Patent: June 14, 2022
    Assignee: DNA Script SAS
    Inventor: Sandrine Creton
  • Patent number: 11312742
    Abstract: The invention relates to a process for preparing a 3?-O-amino-ribonucleotide. It also relates to a compound of formula (III), and its use as a precursor for the synthesis of a 3?-O-amino-ribonucleotide. In formula (III), B is a nitrogenous base or a protected derivative thereof, G and G? are identical or different, and are a protecting group, and RN— is a phthalimido or an imino group.
    Type: Grant
    Filed: February 13, 2020
    Date of Patent: April 26, 2022
    Assignee: DNA Script SAS
    Inventors: Ivo Sarac, Cédric Barboux, Supaporn Niyomchon, Florent Beaufils, Martin Bueschleb
  • Patent number: 11268091
    Abstract: The invention is directed to methods for synthesizing oligonucleotides directly on biomolecules or cells living or fixed. In some embodiments, template-free enzymatic synthesis is implemented under biological conditions with successive cycles of (i) enzymatic addition of a 3?-O-blocked nucleoside triphosphate and (ii) enzymatic deblocking of the incorporated nucleotide to regenerate a free 3? hydroxyl. The invention has applications in single-cell cDNA library construction and analysis.
    Type: Grant
    Filed: December 10, 2019
    Date of Patent: March 8, 2022
    Assignee: DNA Script SAS
    Inventors: Xavier Godron, Adrian Horgan, Sylvain Gariel, Jeffrey Jeddeloh, Robert Nicol, Thomas Ybert
  • Patent number: 11208637
    Abstract: The present invention relates to variants of Terminal deoxynucleotidyl Transferase (TdT), each of which (i) has an amino acid sequence similarity to SEQ ID NO: 2. 11, 13, 15, 17, 19, 21, 23, 25, 27, 29, 31, 33 or 35 with corresponding amino acid substitutions, (ii) is capable of synthesizing a nucleic acid fragment without a template and (iii) is capable of incorporating a modified nucleotide into the nucleic acid fragment.
    Type: Grant
    Filed: July 10, 2020
    Date of Patent: December 28, 2021
    Assignees: DNA Script SAS, Institut Pasteur, National Center for Scientific Research (CNRS)
    Inventors: Elise Champion, Mikhael Soskine, Thomas Ybert, Marc Delarue
  • Publication number: 20210300961
    Abstract: Methods for preparing 3?-O-amino-2?-deoxyribonucleoside-5?-triphosphates with reduced 3?-hydroxy-2?-deoxyribonucleoside-5?-triphosphate contamination by converting 3?-(N-acetone-oxime)-2?-deoxynucleoside triphosphate to 3?-O-amine-2?-deoxynucleoside triphosphate by treatment with an aryl-oxyamine and compositions produced therefrom.
    Type: Application
    Filed: March 26, 2021
    Publication date: September 30, 2021
    Applicant: DNA Script SAS
    Inventors: Filip WOJCIECHOWSKI, Thomas YBERT
  • Publication number: 20210254114
    Abstract: The present invention is directed to methods and kits for template-free enzymatic synthesis of polynucleotides that include or enable a step of efficiently cleaving the polynucleotide products from its initiator using endonuclease V activity and initiator with a 3?-penultimate deoxyinosine.
    Type: Application
    Filed: February 11, 2020
    Publication date: August 19, 2021
    Applicant: DNA Script SAS
    Inventor: Sandrine Creton
  • Publication number: 20210198661
    Abstract: The invention is directed to methods for synthesizing oligonucleotides direction on biomolecules or cells living or fixed. In some embodiments, template-free enzymatic synthesis is implemented under biological conditions with successive cycles of (i) enzymatic addition of a 3?-O-blocked nucleoside triphosphate and (ii) enzymatic deblocking of the incorporated nucleotide to regenerate a free 3? hydroxyl. The invention has applications in single-cell cDNA library construction and analysis.
    Type: Application
    Filed: March 4, 2021
    Publication date: July 1, 2021
    Applicant: DNA Script SAS
    Inventors: Xavier Godron, Adrian Horgan, Sylvain Gariel, Jeffrey Jeddaloh, Robert Nicol, Thomas Ybert
  • Publication number: 20210009994
    Abstract: The invention is directed to methods for synthesizing oligonucleotides direction on biomolecules or cells living or fixed. In some embodiments, template-free enzymatic synthesis is implemented under biological conditions with successive cycles of (i) enzymatic addition of a 3?-O-blocked nucleoside triphosphate and (ii) enzymatic deblocking of the incorporated nucleotide to regenerate a free 3? hydroxyl. The invention has applications in single-cell cDNA library construction and analysis.
    Type: Application
    Filed: December 10, 2019
    Publication date: January 14, 2021
    Applicant: DNA Script SAS
    Inventors: Xavier Godron, Adrian Horgan, Sylvain Gariel, Jeffrey Jeddaloh, Robert Nicol, Thomas Ybert