Abstract: A method, system, and computer program product allow a user to annotate and manipulate a plurality of electronic documents. The user loads a first electronic document comprising electronic content, which content may be annotated or otherwise manipulated by the user and which annotations are made using a user-defined indication means. The annotated content is outputted to a second electronic document, wherein the content is automatically organized into a corresponding grouping defined by a user-selected identifying aspect. The user may subsequently reorganize any of the outputted annotations within the second electronic document. The method, system, and computer program product further utilize a file browser within which a plurality of electronic documents may be organized and maintained by the user and a client-server protocol for communicating data between a remote database and a local storage medium.