Patents Assigned to Illumina Singapore Pte Ltd
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Patent number: 12239992Abstract: Temperature-controllable reagent cartridges and systems for controlling the temperature in such reagent cartridges are provided. An example such system may include a reagent cartridge having reagent reservoirs located at least in part within an interior plenum volume of a cartridge housing. In such an example system, each reagent reservoir may be defined, in part, by a sidewall, and a first reagent reservoir may be spaced apart from a second reagent reservoir to form a fluid flow passage between corresponding sidewalls thereof. A fluid inlet through the cartridge housing may be provided that fluidically connects the interior plenum volume with a fluid supply port of a temperature control system of an analysis instrument when the reagent cartridge is received by the analysis instrument; a fluid outlet through the cartridge housing that fluidically connects the interior plenum volume with a fluid return port of the temperature control system may also be provided.Type: GrantFiled: November 25, 2019Date of Patent: March 4, 2025Assignees: Illumina, Inc., Illumina Singapore Pte. Ltd.Inventors: Ashish Kumar, Kevin Michael Festini, Venkatesh Mysore Nagaraja Rao, Erik Lewis Williamson
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Publication number: 20250059521Abstract: Presented herein are altered polymerase enzymes for improved incorporation of nucleotides and nucleotide analogues, in particular altered polymerases that maintain high fidelity under reduced incorporation times, as well as methods and kits using the same.Type: ApplicationFiled: September 4, 2024Publication date: February 20, 2025Applicants: ILLUMINA, INC., ILLUMINA CAMBRIDGE LIMITED, ILLUMINA SINGAPORE PTE. LTD.Inventors: Kay Klausing, Hamed Tabatabaei Ghomi, Misha Golynskiy, Saurabh Nirantar, Seth McDonald, Sergio Peisajovich
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Generating nucleic acids with modified bases using recombinant terminal deoxynucleotidyl transferase
Patent number: 12209266Abstract: Disclosed herein include methods of generating a single stranded deoxyribonucleic acid (ssDNA) scaffold comprising nucleotides with modified bases using a recombinant terminal deoxynucleotidyl transferase (TdT). The recombinant TdT can comprise an amino acid sequence that is at least 80% identical to a Bos taurus TdT, or a fragment thereof, and for example comprise one or more amino acid substitution mutations at one or more positions functionally equivalent to Glu191, Lys193, Glu194, Asp242, Lys287, Phe296, Met299, Thr342, and His420 in the Bos taurus TdT.Type: GrantFiled: May 11, 2021Date of Patent: January 28, 2025Assignees: Illumina, Inc., Illumina Singapore Pte. Ltd.Inventors: Saurabh Rajendra Nirantar, Sergio Peisajovich, Eric Brustad -
Patent number: 12203076Abstract: The present invention relates to a method for introducing mutations into at least one target nucleic acid molecule comprising (a) providing at least one sample comprising at least one target nucleic acid molecule; and (b) amplifying the at least one target nucleic acid molecule using a low bias DNA polymerase. The present further relates to a use of a low bias DNA polymerase in a method for introducing mutations into one or more nucleic acid molecule(s), a group of sample tags, a method for designing the group of sample tags, a computer readable medium, and a method for preferentially amplifying target nucleic acid molecules.Type: GrantFiled: June 20, 2022Date of Patent: January 21, 2025Assignee: Illumina Singapore Pte. Ltd.Inventors: Leigh G. Monahan, Joyce To, Catherine Maree Burke, Michael Imelfort, Aaron Earl Darling
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Patent number: 12168227Abstract: Actuation systems and methods for use with flow cells. An example apparatus includes a flow cell assembly including a flow cell including at least one channel, a flow cell inlet, and a flow cell outlet. The flow cell assembly includes a gasket assembly operatively fluidically coupled to the flow cell and having a flow cell inlet gasket and a flow cell outlet gasket. The flow cell inlet gasket having a through bore and being fluidically coupled to the flow cell inlet. The flow cell outlet gasket having a through bore and being fluidically coupled to the flow cell outlet. The apparatus includes a reagent cartridge adapted to receive the flow cell assembly and including a pair of reagent cartridge ports adapted to be fluidly coupled to the flow cell inlet gasket and the flow cell outlet gasket.Type: GrantFiled: December 8, 2020Date of Patent: December 17, 2024Assignee: Illumina Singapore PTE. LTD.Inventors: Shyun Long Wang, Beng Keong Ang
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Patent number: 12110516Abstract: Disclosed herein include recombinant terminal deoxynucleotidyl transferases (TdTs). In some embodiments, the recombinant TdT comprises an amino acid sequence that is at least 80% identical to a bovine TdT, wherein the recombinant TdT comprises one or more amino acid substitution mutations at one or more positions functionally equivalent to Glu191, Lys193, Glu194, Asp242, Lys287, Phe296, Met299, Thr342, and His421 in the bovine TdT.Type: GrantFiled: May 11, 2021Date of Patent: October 8, 2024Assignees: Illumina, Inc., Illumina Singapore Pte. Ltd., National University of SingaporeInventors: Saurabh Rajendra Nirantar, Jasmine Puay Suan Chua, Sergio Peisajovich, Wen Shan Yew, Maybelle Darlene Kho Go
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Patent number: 12109563Abstract: A test cartridge for insertion into an analysis instrument having an actuation mechanism, the test cartridge having one or more sensors for measuring an aspect of the actuation mechanism.Type: GrantFiled: September 29, 2020Date of Patent: October 8, 2024Assignee: Illumina Singapore Pte. Ltd.Inventors: Beng Keong Ang, Shyun Long Wang, Heng Kuang Cheng, Chow Jin Chng, Ai Wee Lee, Yashwanth Panduga
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Patent number: 12104182Abstract: Presented herein are altered polymerase enzymes for improved incorporation of nucleotides and nucleotide analogues, in particular altered polymerases that maintain high fidelity under reduced incorporation times, as well as methods and kits using the same.Type: GrantFiled: March 13, 2023Date of Patent: October 1, 2024Assignees: ILLUMINA, INC., ILLUMINA CAMBRIDGE LIMITED, ILLUMINA SINGAPORE PTE. LTD.Inventors: Kay Klausing, Hamed Tabatabaei Ghomi, Misha Golynskiy, Saurabh Nirantar, Seth McDonald, Sergio Peisajovich
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Patent number: 11993801Abstract: Disclosed herein include methods and compositions for nucleic acid synthesis using a terminal deoxynucleotidyl transferase with deoxyribonucleotide trisphosphates each comprising a modified base with a photocleavable carbon chain moiety that enables single incorporations when present.Type: GrantFiled: July 20, 2021Date of Patent: May 28, 2024Assignees: Illumina Singapore Pte. Ltd., Nanyang Technological UniversityInventors: Pin Koon Ee, Yin Nah Teo, Shunsuke Chiba
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Publication number: 20240150508Abstract: In some examples, novel photochemically-reversible hydrogels and nanogel particles are described comprising copolymer chains including at least one reactive alkene or reactive 1,4-diene end group capable of [2+2] or [2+2+2+2] photodimerization, respectively, at wavelengths >270 nm. In various examples, the photochemically-reversible hydrogels comprise copolymer chains including at least one —N3, —C?CH or —CO2H end group for dual functionality and/or pH responsiveness. For nucleic acid sequencing, amplification primers are grafted to photochemically-reversible hydrogels or nanogel particles reversibly bound to surfaces within a flow cell. After sequencing is complete, the photochemically-reversible hydrogel or nanogel particles is/are removable from the flow cell surfaces by irradiation, enabling the flow cell to be reusable.Type: ApplicationFiled: October 6, 2023Publication date: May 9, 2024Applicants: Illumina, Inc., Illumina Cambridge Limited, Illumina Singapore Pte. Ltd.Inventors: Nam Nguyen, Xavier von Hatten, Wayne George, Gianluca Artioli, Brian Mather, Johan Basuki, Shima Gholizadeh
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Publication number: 20230357731Abstract: Presented herein are altered polymerase enzymes for improved incorporation of nucleotides and nucleotide analogues, in particular altered polymerases that maintain high fidelity under reduced incorporation times, as well as methods and kits using the same.Type: ApplicationFiled: March 13, 2023Publication date: November 9, 2023Applicants: ILLUMINA, INC., ILLUMINA CAMBRIDGE LIMITED, ILLUMINA SINGAPORE PTE. LTD.Inventors: Kay Klausing, Hamed Tabatabaei Ghomi, Misha Golynskiy, Saurabh Nirantar, Seth McDonald, Sergio Peisajovich
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Publication number: 20230235388Abstract: Provided herein are compositions and methods for sequencing using at least altering electrical characteristics of polymer ridges. In some examples, the bridges may span the space between first and second electrodes and may include a single-stranded conjugated polymer chain. A plurality of nucleotides may be coupled to corresponding labels. A polymerase may be coupled to the bridge and may add nucleotides to a first polynucleotide using at least a sequence of a second polynucleotide. The labels corresponding to those nucleotides respectively may alter an electrical characteristic of the conjugated polymer chain. Detection circuitry may detect a sequence in which the polymerase adds the nucleotides to the first polynucleotide using at least changes in an electrical signal through the bridge, the changes being responsive to the respective alterations of hybridization using the labels corresponding to those nucleotides.Type: ApplicationFiled: June 24, 2021Publication date: July 27, 2023Applicant: Illumina Singapore PTE. LTD.Inventors: Hassan Bohra, Yin Nah Teo
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Publication number: 20230212534Abstract: Presented herein are altered polymerase enzymes for improved incorporation of nucleotides and nucleotide analogues, in particular altered polymerases that maintain high fidelity under reduced incorporation times, as well as methods and kits using the same.Type: ApplicationFiled: December 21, 2022Publication date: July 6, 2023Applicants: ILLUMINA, INC., ILLUMINA SINGAPORE PTE LTDInventors: Misha Golynskiy, Seth McDonald, Saurabh Nirantar, Matthew Kellinger, Michael Previte, Sergio Peisajovich, Molly He
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Patent number: 11667969Abstract: An example of a method includes providing a substrate with an exposed surface comprising a first chemical group, wherein the providing optionally comprises modifying the exposed surface of the substrate to incorporate the first chemical group; reacting the first chemical group with a first reactive group of a functionalized polymer molecule to form a functionalized polymer coating layer covalently bound to the exposed surface of the substrate; grafting a primer to the functionalized polymer coating layer by reacting the primer with a second reactive group of the functionalized polymer coating layer; and forming a water-soluble protective coating on the primer and the functionalized polymer coating layer. Examples of flow cells incorporating examples of the water-soluble protective coating are also disclosed herein.Type: GrantFiled: May 2, 2018Date of Patent: June 6, 2023Assignees: Illumina, Inc., Illumina Cambridge Limited, Illumina Singapore Pte. Ltd.Inventors: Sean M. Ramirez, Brian D. Mather, Edwin Li, Sojeong Moon, Innsu Daniel Kim, Alexandre Richez, Ludovic Vincent, Xavier von Hatten, Hai Quang Tran, Maxwell Zimmerley, Julia Morrison, Gianluca Andrea Artioli, Krystal Sly, Hayden Black, Lewis J. Kraft, Hong Xie, Wei Wei, Ryan Sanford
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Patent number: D1049423Type: GrantFiled: July 15, 2022Date of Patent: October 29, 2024Assignees: Illumina, Inc., Illumina Singapore Pte. Ltd.Inventors: Erik Allegoren, Jack Godfrey Wood, Boon Kheng Lim, Ridwan Liow, Max Warren Pollock, Robert Nicholas Dean
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Patent number: D1053380Type: GrantFiled: July 15, 2022Date of Patent: December 3, 2024Assignees: Illumina, Inc., Illumina Singapore Pte. Ltd.Inventors: Erik Allegoren, Emerico Alberto Brewer, Robert Nicholas Dean, Max Warren Pollock, Bashkaran Subramanian
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Patent number: D1055310Type: GrantFiled: July 15, 2022Date of Patent: December 24, 2024Assignees: Illumina, Inc., Illumina Singapore Pte. Ltd.Inventors: Erik Allegoren, Emerico Alberto Brewer, Robert Nicholas Dean, Boon Leng Lim, Max Warren Pollock
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Patent number: D1064315Type: GrantFiled: July 15, 2022Date of Patent: February 25, 2025Assignees: Illumina, Inc., Illumina Singapore Pte. Ltd.Inventors: Erik Allegoren, Emerico Alberto Brewer, Boon Leng Lim, Max Warren Pollock
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Patent number: D1065580Type: GrantFiled: July 15, 2022Date of Patent: March 4, 2025Assignees: Illumina, Inc., Illumina Singapore Pte. Ltd.Inventors: Erik Allegoren, Emerico Alberto Brewer, Robert Nicholas Dean, Max Warren Pollock, Bashkaran Subramanian
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Patent number: D1069163Type: GrantFiled: July 15, 2022Date of Patent: April 1, 2025Assignees: Illumina, Inc., Illumina Singapore Pte. Ltd.Inventors: Erik Allegoren, Emerico Alberto Brewer, Robert Nicholas Dean, Max Warren Pollock, Bashkaran Subramanian