Patents Assigned to Japan Biological Informatics Consortium
  • Publication number: 20220090100
    Abstract: The present invention provides a method for producing a modified compound, including the following steps: (1) a step of cleaving in vitro using a CRISPR/Cas9 system, a target site in a gene cluster involved in the biosynthesis of a compound, (2) a step of connecting using Gibson assembly in vitro the gene cluster cleaved in step (1) and a polynucleotide for modification, and (3) a step of expressing the modified gene cluster obtained in step (2) in a microorganism expression system.
    Type: Application
    Filed: January 30, 2020
    Publication date: March 24, 2022
    Applicant: JAPAN BIOLOGICAL INFORMATICS CONSORTIUM
    Inventors: Kazuo SHINYA, Haruo IKEDA, Mamoru KOMATSU, Junko HASHIMOTO, Ikuko KOZONE, Takuya HASHIMOTO, Kei KUDO
  • Patent number: 8951801
    Abstract: Reprogramming substances capable of substituting for Klf4, selected from the group consisting of members of the IRX family (e.g., IRX6), members of the GLIS family (e.g., GLIS1), members of the PTX family (e.g., PITX2), DMRTB1, and nucleic acids that encode the same, are provided. Also provided are a method of producing iPS cells, comprising the step of introducing into a somatic cell both one or more kinds of the above-described nuclear reprogramming substances and a substance capable of inducing iPS cells from a somatic cell when combined with Klf4. Still also provided are iPS cells comprising an extraneous nucleic acid that encodes any one of the above-described nuclear reprogramming substances, that can be obtained by the method, and a method of producing somatic cells by inducing the iPS cells to differentiate.
    Type: Grant
    Filed: February 19, 2010
    Date of Patent: February 10, 2015
    Assignees: Kyoto University, National Institute of Advanced Industrial Science and Technology, Japan Biological Informatics Consortium
    Inventors: Shinya Yamanaka, Naoki Goshima, Momoko Maekawa, Yoshifumi Kawamura, Hiromi Mochizuki
  • Patent number: 8927277
    Abstract: Provided are a method of improving the efficiency of establishment of iPS cells, comprising the step of contacting one or more substances selected from the group consisting of members of the GLIS family (e.g., GLIS1) and nucleic acids that encode the same and one or more substances selected from the group consisting of members of the Klf family and nucleic acids that encode the same, with a somatic cell, an iPS cell comprising an exogenous nucleic acid that encodes a member of the GLIS family or a member of the Klf family, that can be obtained by the method, and a method of producing a somatic cell by inducing the differentiation of the iPS cell.
    Type: Grant
    Filed: February 16, 2011
    Date of Patent: January 6, 2015
    Assignees: Kyoto University, National Institute of Advanced Industrial Science and Technology, Japan Biological Informatics Consortium
    Inventors: Shinya Yamanaka, Naoki Goshima, Momoko Maekawa, Yoshifumi Kawamura, Hiromi Mochizuki
  • Publication number: 20130029423
    Abstract: Provided are a method of improving the efficiency of establishment of iPS cells, comprising the step of contacting one or more substances selected from the group consisting of members of the GLIS family (e.g., GLIS1) and nucleic acids that encode the same and one or more substances selected from the group consisting of members of the Klf family and nucleic acids that encode the same, with a somatic cell, an iPS cell comprising an exogenous nucleic acid that encodes a member of the GLIS family or a member of the Klf family, that can be obtained by the method, and a method of producing a somatic cell by inducing the differentiation of the iPS cell.
    Type: Application
    Filed: February 16, 2011
    Publication date: January 31, 2013
    Applicants: Kyoto University, Japan Biological Informatics Consortium, National Institute of Advanced Industrial Science and Technology
    Inventors: Shinya Yamanaka, Naoki Goshima, Momoko Maekawa, Yoshifumi Kawamura, Hiromi Mochizuki
  • Publication number: 20120052583
    Abstract: Reprogramming substances capable of substituting for Klf4, selected from the group consisting of members of the IRX family (e.g., IRX6), members of the GLIS family (e.g., GLIS1), members of the PTX family (e.g., PITX2), DMRTB1, and nucleic acids that encode the same, are provided. Also provided are a method of producing iPS cells, comprising the step of introducing into a somatic cell both one or more kinds of the above-described nuclear reprogramming substances and a substance capable of inducing iPS cells from a somatic cell when combined with Klf4. Still also provided are iPS cells comprising an extraneous nucleic acid that encodes any one of the above-described nuclear reprogramming substances, that can be obtained by the method, and a method of producing somatic cells by inducing the iPS cells to differentiate.
    Type: Application
    Filed: February 19, 2010
    Publication date: March 1, 2012
    Applicants: KYOTO UNIVERSITY, National Institute of Advances Industtrial Science and Technology, JAPAN BIOLOGICAL INFORMATICS CONSORTIUM
    Inventors: Shinya Yamanaka, Naoki Goshima, Momoko Maekawa, Yoshifumi Kawamura, Hiromi Mochizuki
  • Publication number: 20100262376
    Abstract: Provided is an apparatus by which a nucleic acid may be analyzed quickly and precisely.
    Type: Application
    Filed: July 24, 2008
    Publication date: October 14, 2010
    Applicants: The University of Tokyo, Japan Biological Informatics Consortium
    Inventors: Tsutomu Suzuki, Hiroki Ueda
  • Publication number: 20050095629
    Abstract: Multi-dimensional scaling is used to solve characteristic polynomials of similarity matrixes, in order to determine a minimal-number SNP set (htSNPs (haplotype-tagging SNPS)) for identifying an arbitrary number of haplotypes in blocks with strong linkage disequilibrium. Thus, unnecessary SNP typing in blocks with strong linkage disequilibrium can be avoided.
    Type: Application
    Filed: September 10, 2004
    Publication date: May 5, 2005
    Applicants: NEC Corporation, Mitsubishi Research Institute, Inc., Japan Biological Informatics Consortium
    Inventors: Toshio Furuta, Naoyuki Kamatani, Yoshihiro Nakamura, Toshikazu Ito, Eisuke Inoue
  • Publication number: 20040219566
    Abstract: More precise correction of global and local distortions of microarray data and correction of measurement errors caused by a difference in sensitivity between fluorescent dyes. A data standardization unit for a first process inputs gene expression intensity data from an input device, standardizes the gene expression intensity data by using grid-by-grid order statistics on the assumption that most genes are in a non-expression state, and outputs the standardized gene expression intensity data. A spot-position-based correction unit for a second process estimates a distortion depending on a spot position on a grid by grid basis by a nonparametric smoothing method and outputs gene expression intensity data whose distortion depending on the spot position has been corrected.
    Type: Application
    Filed: October 30, 2003
    Publication date: November 4, 2004
    Applicants: NEC CORPORATION, MEGU OHTAKI, JAPAN BIOLOGICAL INFORMATICS CONSORTIUM
    Inventors: Masataka Andoh, Akira Saitoh, Megu Ohtaki, Kenichi Satoh, Masahiko Nishiyama, Keiko Otani