Patents Assigned to Marshfield Clinic
  • Publication number: 20150017733
    Abstract: The present invention provides methods for detecting and quantifying metabolites in a biological sample by measuring the concentration of a test metabolite in the sample and comparing that concentration against the concentration of the reference metabolite; enabling accurate metabolite concentration measurements to determine aberrant drug usage patterns. Also disclosed is an analytical testing device and related computer-assisted products for detecting and quantifying metabolites in a biological sample efficiently and accurately.
    Type: Application
    Filed: August 12, 2014
    Publication date: January 15, 2015
    Applicant: MARSHFIELD CLINIC, INC.
    Inventors: Michael E.M. Larson, Thomas M. Richards
  • Patent number: 8765982
    Abstract: A composition is provided that, when utilized in combination with warfarin, greatly improves the anticoagulant effects of warfarin in mammalian subjects. The composition is a compound having a naphthohydroquinone ring system substantially similar to the ring system of the reduced form of vitamin K1 and has the general formula: where R1 and R4 are hydrogen or acyl, R2 is a saturated or unsaturated alkyl group with up to 6 carbons, and R3 is a saturated or unsaturated alkyl group with up to 20 carbons, or R2 and R3 are part of a cyclic or polycyclic ring system.
    Type: Grant
    Filed: September 30, 2010
    Date of Patent: July 1, 2014
    Assignee: Marshfield Clinic Health System, Inc.
    Inventors: David E. Lewis, Michael D. Caldwell
  • Patent number: 8084229
    Abstract: The present invention is directed to isolated nucleic acids containing functional polynucleotide sequences representing an enhancer element for the Gene Differentially Expressed in Prostate (GDEP). Such molecules are useful in conferring retinal specific transcriptional responsiveness on associated promoters and methods for directing retinal specific gene expression are accordingly disclosed.
    Type: Grant
    Filed: December 29, 2008
    Date of Patent: December 27, 2011
    Assignee: Marshfield Clinic
    Inventors: Deanna S. Cross, James K. Burmester
  • Publication number: 20110251195
    Abstract: The invention provides a single nucleotide polymorphism (SNP) rs1042714 in the human ADRB2 gene (Gln27Glu) associated with a clinically meaningful reduction in intraocular pressure (IOP) in a human following treatment with a topical beta-blocker. Nucleic acids comprising the SNP are used to screen glaucoma-afflicted individuals to thereby provide an improved method for genotype-based prescribing of beta-blockers in glaucoma management.
    Type: Application
    Filed: June 23, 2011
    Publication date: October 13, 2011
    Applicant: Marshfield Clinic
    Inventors: Catherine Anne McCarty, James K. Burmester, Bickol N. Mukesh, Richard B. Patchett, Russell Alan Wilke
  • Publication number: 20110189675
    Abstract: The present invention provides a method for use in treating a patient with an anticoagulant to optimize drug therapy and/or to prevent an adverse drug response. More particularly, the present invention relates to a method and system for use in treating a patient with Coumadin® or a substance containing warfarin. Methods of the present invention utilize variables that include the patient's CYP4F2 genotype.
    Type: Application
    Filed: April 13, 2011
    Publication date: August 4, 2011
    Applicant: Marshfield Clinic
    Inventors: Michael D. Caldwell, Richard L. Berg, James K. Burmester
  • Patent number: 7964715
    Abstract: The promoter region and various fragments thereof for the yellow fever mosquito (Aedes aegypti) ribonucleotide reductase small subunit (R2) are disclosed. Nucleic acids and host cells that contain the promoter sequences are also disclosed. Further disclosed are various methods involving the use of these sequences.
    Type: Grant
    Filed: December 6, 2006
    Date of Patent: June 21, 2011
    Assignee: Marshfield Clinic
    Inventors: Daphne Quynh-Dao Pham, Joy J. Winzerling
  • Patent number: 7785895
    Abstract: The present invention provides methods for detecting and quantifying metabolites in a biological sample by measuring the concentration of a test metabolite in the sample and comparing that concentration against the concentration of the reference metabolite; enabling accurate metabolite concentration measurements to determine aberrant drug usage patterns. Also disclosed is an analytical testing device and related computer-assisted products for detecting and quantifying metabolites in a biological sample efficiently and accurately.
    Type: Grant
    Filed: August 3, 2009
    Date of Patent: August 31, 2010
    Assignee: Marshfield Clinic
    Inventors: Michael E. M. Larson, Thomas M. Richards
  • Patent number: 7771942
    Abstract: The invention provides a method for determining a genetic predisposition to prostate cancer in a male human subject. In one aspect, the method comprises determining whether the subject has the genotype GG of refSNP rs125555, where the genotype GG of refSNP rs125555 indicates that the subject is genetically predisposed to prostate cancer.
    Type: Grant
    Filed: July 25, 2007
    Date of Patent: August 10, 2010
    Assignee: Marshfield Clinic
    Inventor: James K. Burmester
  • Publication number: 20090176870
    Abstract: The present invention provides a method of modulating TGF-? activity in a subject. Methods of the present invention comprise administering to the subject an effective amount of a compound of the formula: or a salt, prodrug, tautomer, hydrate, solvate, or stereoisomer thereof, wherein a is an integer from 0 to 4; each R1 is independently hydroxy, alkoxy, halide, alkyl, cyano, nitro, amino, monoalkylamino, dialkylamino, or carboxy; R2 is aryl, cycloalkyl, alkenyl, or alkyl, each of which is optionally substituted; each of X1 and X2 is independently O, S or NR3, wherein R3 is hydrogen or alkyl; X3 is hydrogen, alkoxy, alkyl, hydroxy, halide, amino, monoalkylamino, or dialkylamino; and X4 is alkoxy, hydroxy, halide, amino, monoalkylamino, or dialkylamino.
    Type: Application
    Filed: January 9, 2009
    Publication date: July 9, 2009
    Applicant: MARSHFIELD CLINIC
    Inventor: James K. Burmester
  • Publication number: 20090087856
    Abstract: The present invention provides a method for use in treating a patient with an anticoagulant to optimize drug therapy and/or to prevent an adverse drug response. More particularly, the present invention relates to a method and system for use in treating a patient with Coumadin® or a substance containing warfarin. Methods of the present invention utilize variables that include the patient's CYP4F2 genotype.
    Type: Application
    Filed: October 15, 2008
    Publication date: April 2, 2009
    Applicant: Marshfield Clinic
    Inventors: Michael D. Caldwell, Richard L. Berg, James K. Burmester
  • Patent number: 7250265
    Abstract: Disclosed is a method of screening a substance for angiotensinogen receptor-modulatory activity. The method includes the steps of contacting placental-derived cells with labeled angiotensinogen and a candidate substance; and then determining whether the candidate substance inhibits the binding of angiotensinogen to the placental-derived cells relative to a control wherein the placental-derived cells are contacted with angiotensinogen in the absence of the candidate substance.
    Type: Grant
    Filed: April 5, 2002
    Date of Patent: July 31, 2007
    Assignee: Marshfield Clinic
    Inventor: Duane A. Tewksbury
  • Publication number: 20070166722
    Abstract: The present invention provides a method for determining the presence of Mycobacterium avium subspecies paratuberculosis (MAP) in a sample. The method involves using a pair of oligonucleotide probes and detecting the presence or absence of fluorescence resonance energy transfer (FRET) between the donor fluorescent moiety of the first probe and the corresponding acceptor fluorescent moiety of the second probe. The present invention also provides a method for isolating and/or extracting DNA from a microorganism.
    Type: Application
    Filed: August 9, 2005
    Publication date: July 19, 2007
    Applicant: Marshfield Clinic
    Inventor: Jay Ellingson
  • Patent number: 7241566
    Abstract: A method for detecting a Salmonella species, E. coli O157:H7, or Listeria monocytogenes is disclosed. The method involves amplifying a genomic nucleotide sequence of a corresponding species and detecting the amplification product. Various primers and probes that can be used in the method are also disclosed. In one embodiment, the amplification step of the method is accomplished by real-time PCR and the amplification product is detected by fluorescence resonance energy transfer using a pair of labeled polynucleotides.
    Type: Grant
    Filed: June 21, 2002
    Date of Patent: July 10, 2007
    Assignee: Marshfield Clinic
    Inventors: Jay L. E. Ellingson, Dirk N. Vevea
  • Patent number: 7232547
    Abstract: The present invention is directed to a well sampling tape (otherwise known as “microwell tape” or simply “tape”), a dispenser for dispensing small volumes of liquid into the wells formed in the tape and a detector for high-throughput sample reading of the liquid dispensed in the individual wells. The present invention is more specifically directed to a bioassay system incorporating the materials listed above.
    Type: Grant
    Filed: March 21, 2003
    Date of Patent: June 19, 2007
    Assignee: Marshfield Clinic
    Inventors: Terry L. Rusch, James L. Weber, Mitchel J. Doktycz, Kim M. Fieweger, Jon P. Chudyk, J. Steven Hicks, Jianhong Che
  • Patent number: 7205111
    Abstract: Disclosed is a method of detecting bacteria in a biological sample, especially a blood sample, without the need for extensive sub-culturing of the sample. Nucleic acid present within the sample is isolated and bacterial DNA specifically amplified using primers that uniquely prime the amplification of 16s rRNA-encoding nucleic acid. The amplicons are then digested with an endonuclease to yield a restriction fragment length profile for the biological sample. The restriction fragment length profile for the biological sample is then compare to a database of profiles made using cultures of known bacterial species. A match between the sample profile and the database identifies the bacteria present in the sample.
    Type: Grant
    Filed: July 23, 2004
    Date of Patent: April 17, 2007
    Assignee: Marshfield Clinic
    Inventors: Jeffrey E. Christensen, Pamela J. Squires, Kurt D. Reed
  • Publication number: 20060172334
    Abstract: The present invention provides a method for detecting adverse reaction susceptibility and/or severity risk to an HMG CoA reductase inhibitor by determining the genotype of a CYP3A gene of a subject.
    Type: Application
    Filed: January 31, 2006
    Publication date: August 3, 2006
    Applicant: Marshfield Clinic
    Inventors: Russell Wilke, James Burmester, Richard Berg
  • Patent number: 5858251
    Abstract: A method of concentrating waterborne pathogenic organisms from water potentially contaminated by dilute densities of the organisms is described. Potentially contaminated water is directed along an elongated flow path which rests generally within a plane perpendicular to an axis of rotation, and is subjected to centrifugal forces by rotating the flow path about the rotational axis. The method may be executed by use of a conventional continuous flow channel-type blood plasmapheresis centrifuge. The method has been tested for its capability for recovering pathogenic protozoan parasites such as Cryptosporidium and Giardia from contaminated water, and recovery rates of up to 100% have been observed.
    Type: Grant
    Filed: August 11, 1997
    Date of Patent: January 12, 1999
    Assignee: Marshfield Medical Research and Education Foundation, A Division of Marshfield Clinic
    Inventors: Mark A. Borchardt, Susan K. Spencer
  • Patent number: 5846439
    Abstract: A method of concentrating oocysts of waterborne protozoan parasites from water potentially contaminated by dilute densities of the parasites is described. Potentially contaminated water is fed into the separation channel of a continuous separation channel centrifuge. The water is centrifuged for a period of time sufficient to collect the parasitic oocysts and cysts in the channel.
    Type: Grant
    Filed: February 28, 1996
    Date of Patent: December 8, 1998
    Assignee: Marshfield Medical Research & Education Foundation, a Division of Marshfield Clinic
    Inventors: Mark A. Borchardt, Susan Spencer
  • Patent number: 5660186
    Abstract: A bioptic device of the cannula and internal stylet type wherein the stylet includes a sharp tip with a gutter adjacent to the tip for obtaining a tissue sample within a larger body of tissue. The cannula, stylet tip, and gutter bear threading to better enable the bioptic device to fix tissue when the bioptic device is rotationally advanced within the body of tissue. The cannula and stylet may additionally bear complementary threading to ensure that they can only be rotationally actuated with respect to each other.
    Type: Grant
    Filed: June 7, 1995
    Date of Patent: August 26, 1997
    Assignee: Marshfield Clinic
    Inventor: Joseph S. Bachir
  • Patent number: 5582979
    Abstract: Abundant interspersed repetitive DNA sequences of the form (dC-dA).sub.n.(dG-dT).sub.n have been shown to exhibit length polymorphisms. The polymorphisms can be used to identify individuals as in paternity and forensic testing, and can be used to map genes which are involved in genetic diseases or in other economically important traits. The polynucleotide provided consists of a DNA fragment, preferably .ltoreq.300 base pairs in length containing one or more blocks of tandem dinucleotide repeats (dC-dA).sub.n.(dG-dT).sub.n wherein n.gtoreq.6 and preferably .gtoreq.10.
    Type: Grant
    Filed: April 4, 1994
    Date of Patent: December 10, 1996
    Assignee: Marshfield Clinic
    Inventor: James L. Weber