Patents Assigned to Molecular Assemblies, Inc.
  • Patent number: 11612873
    Abstract: Nucleic acid memory strands encoding digital data using a sequence of homopolymer tracts of repeated nucleotides provides a cheaper and faster alternative to conventional digital DNA storage techniques. The use of homopolymer tracts allows for lower fidelity, high throughput sequencing techniques such as nanopore sequencing to read data encoded in the memory strands. Specialized synthesis techniques allow for synthesis of long memory strands capable of encoding large volumes of data despite the reduced data density afforded by homopolymer tracts as compared to conventional single nucleotide sequences.
    Type: Grant
    Filed: April 24, 2019
    Date of Patent: March 28, 2023
    Assignee: Molecular Assemblies, Inc.
    Inventors: J. William Efcavitch, Sanjay Agarwalla, Kim Albizati, Alan W. Grubbs, Matthew T. Holden, Patrycja A. Hopkins, Jay K. Singh
  • Patent number: 11390858
    Abstract: The invention includes methods for identifying polymerases, such as modified terminal nucleotidyl transferases (TdT), that are capable of binding nucleotides comprising removable 3?-O-blocking moieties to a nucleic acid initiator, without the use of a template. The invention further includes the identified polymerases, and methods of using the polymerases for de novo synthesis of predetermined oligonucleotide sequences.
    Type: Grant
    Filed: June 3, 2020
    Date of Patent: July 19, 2022
    Assignee: Molecular Assemblies, Inc.
    Inventors: Julie L. Tubbs, Prem Sinha, Boguslaw Stec, Christopher Wilson, J. William Efcavitch, Deanne W. Sammond
  • Patent number: 11384377
    Abstract: The invention provides improved methods for synthesizing polynucleotides, such as DNA and RNA, using renewable initiators coupled to a solid support. Using the methods of the invention, specific sequences of polynucleotides can be synthesized de novo, base by base, in an aqueous environment, without the use of a nucleic acid template.
    Type: Grant
    Filed: April 6, 2020
    Date of Patent: July 12, 2022
    Assignee: Molecular Assemblies, Inc.
    Inventors: J. William Efcavitch, Kim Albizati, Natasha Paul, Sanjay Agarwalla
  • Patent number: 11331643
    Abstract: The invention provides improved methods for synthesizing polynucleotides, such as DNA and RNA, using renewable initiators coupled to a solid support. Using the methods of the invention, specific sequences of polynucleotides can be synthesized de novo, base by base, in an aqueous environment, without the use of a nucleic acid template.
    Type: Grant
    Filed: January 29, 2019
    Date of Patent: May 17, 2022
    Assignee: Molecular Assemblies, Inc.
    Inventors: J. William Efcavitch, Matthew T. Holden
  • Patent number: 11174512
    Abstract: Nucleic acid memory strands encoding digital data using a sequence of homopolymer tracts of repeated nucleotides provides a cheaper and faster alternative to conventional digital DNA storage techniques. The use of homopolymer tracts allows for lower fidelity, high throughput sequencing techniques such as nanopore sequencing to read data encoded in the memory strands. Specialized synthesis techniques allow for synthesis of long memory strands capable of encoding large volumes of data despite the reduced data density afforded by homopolymer tracts as compared to conventional single nucleotide sequences.
    Type: Grant
    Filed: August 21, 2018
    Date of Patent: November 16, 2021
    Assignee: Molecular Assemblies, Inc.
    Inventors: J. William Efcavitch, Matthew T. Holden
  • Patent number: 10982276
    Abstract: Nucleic acid memory strands encoding digital data using a sequence of homopolymer tracts of repeated nucleotides provides a cheaper and faster alternative to conventional digital DNA storage techniques. The use of homopolymer tracts allows for lower fidelity, high throughput sequencing techniques such as nanopore sequencing to read data encoded in the memory strands. Specialized synthesis techniques allow for synthesis of long memory strands capable of encoding large volumes of data despite the reduced data density afforded by homopolymer tracts as compared to conventional single nucleotide sequences.
    Type: Grant
    Filed: May 31, 2018
    Date of Patent: April 20, 2021
    Assignee: Molecular Assemblies, Inc.
    Inventors: J. William Efcavitch, Matthew T. Holden
  • Patent number: 10774316
    Abstract: The invention includes methods for identifying polymerases, such as modified terminal nucleotidyl transferases (TdT), that are capable of binding nucleotides comprising removable 3?-O-blocking moieties to a nucleic acid initiator, without the use of a template. The invention further includes the identified polymerases, and methods of using the polymerases for de novo synthesis of predetermined oligonucleotide sequences.
    Type: Grant
    Filed: October 19, 2018
    Date of Patent: September 15, 2020
    Assignee: Molecular Assemblies, Inc.
    Inventors: J. William Efcavitch, Julie L. Tubbs, Prem Sinha, Boguslaw Stec
  • Patent number: 10760063
    Abstract: The invention includes methods for identifying polymerases, such as modified terminal nucleotidyl transferases (TdT), that are capable of binding nucleotides comprising removable 3?-O-blocking moieties to a nucleic acid initiator, without the use of a template. The invention further includes the identified polymerases, and methods of using the polymerases for de novo synthesis of predetermined oligonucleotide sequences.
    Type: Grant
    Filed: August 27, 2018
    Date of Patent: September 1, 2020
    Assignee: Molecular Assemblies, Inc.
    Inventors: J. William Efcavitch, Julie L. Tubbs, Prem Sinha, Boguslaw Stec
  • Patent number: 10683536
    Abstract: The invention provides improved methods for synthesizing polynucleotides, such as DNA and RNA, using renewable initiators coupled to a solid support. Using the methods of the invention, specific sequences of polynucleotides can be synthesized de novo, base by base, in an aqueous environment, without the use of a nucleic acid template.
    Type: Grant
    Filed: August 18, 2015
    Date of Patent: June 16, 2020
    Assignee: Molecular Assemblies, Inc.
    Inventor: J. William Efcavitch
  • Publication number: 20180274001
    Abstract: Provided herein are methods for template-independent synthesis of oligonucleotides using a DNA polymerase. Also provided are methods for template-directed synthesis of oligonucleotides and for sequencing of nucleic acids using DNA polymerase theta and 3?-aminoalkoxy nucleotides.
    Type: Application
    Filed: March 20, 2018
    Publication date: September 27, 2018
    Applicant: Molecular Assemblies, Inc.
    Inventors: J. William Efcavitch, Julie L. Tubbs
  • Patent number: 10059929
    Abstract: The invention includes methods for identifying polymerases, such as modified terminal nucleotidyl transferases (TdT), that are capable of binding nucleotides comprising removable 3?-O-blocking moieties to a nucleic acid initiator, without the use of a template. The invention further includes the identified polymerases, and methods of using the polymerases for de novo synthesis of predetermined oligonucleotide sequences.
    Type: Grant
    Filed: October 20, 2015
    Date of Patent: August 28, 2018
    Assignee: Molecular Assemblies, Inc.
    Inventors: J. William Efcavitch, Juliesta E. Sylvester
  • Patent number: 10041110
    Abstract: The invention provides improved methods for synthesizing polynucleotides, such as DNA and RNA, using enzymes and specially designed nucleotide analogs. Using the methods of the invention, specific sequences of polynucleotides can be synthesized de novo, base by base, in an aqueous environment, without the use of a nucleic acid template. Because the nucleotide analogs have an unmodified 3? OH, i.e., as found in “natural” deoxyribose and ribose molecules, the analogs result in natural polynucleotides suitable for incorporation into biological systems.
    Type: Grant
    Filed: July 28, 2014
    Date of Patent: August 7, 2018
    Assignee: Molecular Assemblies, Inc.
    Inventors: J. William Efcavitch, Suhaib Siddiqi
  • Patent number: 9771613
    Abstract: The invention provides improved methods for synthesizing polynucleotides, such as DNA and RNA, using enzymes and specially designed nucleotide analogs. Using the methods of the invention, specific sequences of polynucleotides can be synthesized de novo, base by base, in an aqueous environment, without the use of a nucleic acid template. Because the nucleotide analogs have an unmodified 3? OH, i.e., as found in “natural” deoxyribose and ribose molecules, the analogs result in natural polynucleotides suitable for incorporation into biological systems.
    Type: Grant
    Filed: August 18, 2015
    Date of Patent: September 26, 2017
    Assignee: Molecular Assemblies, Inc.
    Inventor: J. William Efcavitch
  • Patent number: 9695470
    Abstract: The invention provides improved methods for synthesizing polynucleotides, such as DNA and RNA, using enzymes and specially designed nucleotide analogs. Using the methods of the invention, specific sequences of polynucleotides can be synthesized de novo, base by base, in an aqueous environment, without the use of a nucleic acid template. Because the nucleotide analogs have an unmodified 3? OH, i.e., as found in “natural” deoxyribose and ribose molecules, the analogs result in natural polynucleotides suitable for incorporation into biological systems.
    Type: Grant
    Filed: February 19, 2016
    Date of Patent: July 4, 2017
    Assignee: Molecular Assemblies, Inc.
    Inventors: J. William Efcavitch, Suhaib Siddiqi
  • Patent number: 9279149
    Abstract: The invention provides improved methods for synthesizing polynucleotides, such as DNA and RNA, using enzymes and specially designed nucleotide analogs. Using the methods of the invention, specific sequences of polynucleotides can be synthesized de novo, base by base, in an aqueous environment, without the use of a nucleic acid template. Because the nucleotide analogs have an unmodified 3? OH, i.e., as found in “natural” deoxyribose and ribose molecules, the analogs result in natural polynucleotides suitable for incorporation into biological systems.
    Type: Grant
    Filed: August 13, 2014
    Date of Patent: March 8, 2016
    Assignee: Molecular Assemblies, Inc.
    Inventors: J. William Efcavitch, Suhaib Siddiqi
  • Patent number: 8808989
    Abstract: The invention provides improved methods for synthesizing polynucleotides, such as DNA and RNA, using enzymes and specially designed nucleotide analogs. Using the methods of the invention, specific sequences of polynucleotides can be synthesized de novo, base by base, in an aqueous environment, without the use of a nucleic acid template. Because the nucleotide analogs have an unmodified 3? OH, i.e., as found in “natural” deoxyribose and ribose molecules, the analogs result in natural polynucleotides suitable for incorporation into biological systems.
    Type: Grant
    Filed: October 17, 2013
    Date of Patent: August 19, 2014
    Assignee: Molecular Assemblies, Inc.
    Inventors: J. William Efcavitch, Suhaib Siddiqi