Patents Assigned to Molecular Assemblies, Inc.
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Patent number: 11612873Abstract: Nucleic acid memory strands encoding digital data using a sequence of homopolymer tracts of repeated nucleotides provides a cheaper and faster alternative to conventional digital DNA storage techniques. The use of homopolymer tracts allows for lower fidelity, high throughput sequencing techniques such as nanopore sequencing to read data encoded in the memory strands. Specialized synthesis techniques allow for synthesis of long memory strands capable of encoding large volumes of data despite the reduced data density afforded by homopolymer tracts as compared to conventional single nucleotide sequences.Type: GrantFiled: April 24, 2019Date of Patent: March 28, 2023Assignee: Molecular Assemblies, Inc.Inventors: J. William Efcavitch, Sanjay Agarwalla, Kim Albizati, Alan W. Grubbs, Matthew T. Holden, Patrycja A. Hopkins, Jay K. Singh
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Patent number: 11390858Abstract: The invention includes methods for identifying polymerases, such as modified terminal nucleotidyl transferases (TdT), that are capable of binding nucleotides comprising removable 3?-O-blocking moieties to a nucleic acid initiator, without the use of a template. The invention further includes the identified polymerases, and methods of using the polymerases for de novo synthesis of predetermined oligonucleotide sequences.Type: GrantFiled: June 3, 2020Date of Patent: July 19, 2022Assignee: Molecular Assemblies, Inc.Inventors: Julie L. Tubbs, Prem Sinha, Boguslaw Stec, Christopher Wilson, J. William Efcavitch, Deanne W. Sammond
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Patent number: 11384377Abstract: The invention provides improved methods for synthesizing polynucleotides, such as DNA and RNA, using renewable initiators coupled to a solid support. Using the methods of the invention, specific sequences of polynucleotides can be synthesized de novo, base by base, in an aqueous environment, without the use of a nucleic acid template.Type: GrantFiled: April 6, 2020Date of Patent: July 12, 2022Assignee: Molecular Assemblies, Inc.Inventors: J. William Efcavitch, Kim Albizati, Natasha Paul, Sanjay Agarwalla
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Patent number: 11331643Abstract: The invention provides improved methods for synthesizing polynucleotides, such as DNA and RNA, using renewable initiators coupled to a solid support. Using the methods of the invention, specific sequences of polynucleotides can be synthesized de novo, base by base, in an aqueous environment, without the use of a nucleic acid template.Type: GrantFiled: January 29, 2019Date of Patent: May 17, 2022Assignee: Molecular Assemblies, Inc.Inventors: J. William Efcavitch, Matthew T. Holden
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Patent number: 11174512Abstract: Nucleic acid memory strands encoding digital data using a sequence of homopolymer tracts of repeated nucleotides provides a cheaper and faster alternative to conventional digital DNA storage techniques. The use of homopolymer tracts allows for lower fidelity, high throughput sequencing techniques such as nanopore sequencing to read data encoded in the memory strands. Specialized synthesis techniques allow for synthesis of long memory strands capable of encoding large volumes of data despite the reduced data density afforded by homopolymer tracts as compared to conventional single nucleotide sequences.Type: GrantFiled: August 21, 2018Date of Patent: November 16, 2021Assignee: Molecular Assemblies, Inc.Inventors: J. William Efcavitch, Matthew T. Holden
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Patent number: 10982276Abstract: Nucleic acid memory strands encoding digital data using a sequence of homopolymer tracts of repeated nucleotides provides a cheaper and faster alternative to conventional digital DNA storage techniques. The use of homopolymer tracts allows for lower fidelity, high throughput sequencing techniques such as nanopore sequencing to read data encoded in the memory strands. Specialized synthesis techniques allow for synthesis of long memory strands capable of encoding large volumes of data despite the reduced data density afforded by homopolymer tracts as compared to conventional single nucleotide sequences.Type: GrantFiled: May 31, 2018Date of Patent: April 20, 2021Assignee: Molecular Assemblies, Inc.Inventors: J. William Efcavitch, Matthew T. Holden
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Patent number: 10774316Abstract: The invention includes methods for identifying polymerases, such as modified terminal nucleotidyl transferases (TdT), that are capable of binding nucleotides comprising removable 3?-O-blocking moieties to a nucleic acid initiator, without the use of a template. The invention further includes the identified polymerases, and methods of using the polymerases for de novo synthesis of predetermined oligonucleotide sequences.Type: GrantFiled: October 19, 2018Date of Patent: September 15, 2020Assignee: Molecular Assemblies, Inc.Inventors: J. William Efcavitch, Julie L. Tubbs, Prem Sinha, Boguslaw Stec
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Patent number: 10760063Abstract: The invention includes methods for identifying polymerases, such as modified terminal nucleotidyl transferases (TdT), that are capable of binding nucleotides comprising removable 3?-O-blocking moieties to a nucleic acid initiator, without the use of a template. The invention further includes the identified polymerases, and methods of using the polymerases for de novo synthesis of predetermined oligonucleotide sequences.Type: GrantFiled: August 27, 2018Date of Patent: September 1, 2020Assignee: Molecular Assemblies, Inc.Inventors: J. William Efcavitch, Julie L. Tubbs, Prem Sinha, Boguslaw Stec
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Patent number: 10683536Abstract: The invention provides improved methods for synthesizing polynucleotides, such as DNA and RNA, using renewable initiators coupled to a solid support. Using the methods of the invention, specific sequences of polynucleotides can be synthesized de novo, base by base, in an aqueous environment, without the use of a nucleic acid template.Type: GrantFiled: August 18, 2015Date of Patent: June 16, 2020Assignee: Molecular Assemblies, Inc.Inventor: J. William Efcavitch
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Publication number: 20180274001Abstract: Provided herein are methods for template-independent synthesis of oligonucleotides using a DNA polymerase. Also provided are methods for template-directed synthesis of oligonucleotides and for sequencing of nucleic acids using DNA polymerase theta and 3?-aminoalkoxy nucleotides.Type: ApplicationFiled: March 20, 2018Publication date: September 27, 2018Applicant: Molecular Assemblies, Inc.Inventors: J. William Efcavitch, Julie L. Tubbs
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Patent number: 10059929Abstract: The invention includes methods for identifying polymerases, such as modified terminal nucleotidyl transferases (TdT), that are capable of binding nucleotides comprising removable 3?-O-blocking moieties to a nucleic acid initiator, without the use of a template. The invention further includes the identified polymerases, and methods of using the polymerases for de novo synthesis of predetermined oligonucleotide sequences.Type: GrantFiled: October 20, 2015Date of Patent: August 28, 2018Assignee: Molecular Assemblies, Inc.Inventors: J. William Efcavitch, Juliesta E. Sylvester
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Patent number: 10041110Abstract: The invention provides improved methods for synthesizing polynucleotides, such as DNA and RNA, using enzymes and specially designed nucleotide analogs. Using the methods of the invention, specific sequences of polynucleotides can be synthesized de novo, base by base, in an aqueous environment, without the use of a nucleic acid template. Because the nucleotide analogs have an unmodified 3? OH, i.e., as found in “natural” deoxyribose and ribose molecules, the analogs result in natural polynucleotides suitable for incorporation into biological systems.Type: GrantFiled: July 28, 2014Date of Patent: August 7, 2018Assignee: Molecular Assemblies, Inc.Inventors: J. William Efcavitch, Suhaib Siddiqi
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Patent number: 9771613Abstract: The invention provides improved methods for synthesizing polynucleotides, such as DNA and RNA, using enzymes and specially designed nucleotide analogs. Using the methods of the invention, specific sequences of polynucleotides can be synthesized de novo, base by base, in an aqueous environment, without the use of a nucleic acid template. Because the nucleotide analogs have an unmodified 3? OH, i.e., as found in “natural” deoxyribose and ribose molecules, the analogs result in natural polynucleotides suitable for incorporation into biological systems.Type: GrantFiled: August 18, 2015Date of Patent: September 26, 2017Assignee: Molecular Assemblies, Inc.Inventor: J. William Efcavitch
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Patent number: 9695470Abstract: The invention provides improved methods for synthesizing polynucleotides, such as DNA and RNA, using enzymes and specially designed nucleotide analogs. Using the methods of the invention, specific sequences of polynucleotides can be synthesized de novo, base by base, in an aqueous environment, without the use of a nucleic acid template. Because the nucleotide analogs have an unmodified 3? OH, i.e., as found in “natural” deoxyribose and ribose molecules, the analogs result in natural polynucleotides suitable for incorporation into biological systems.Type: GrantFiled: February 19, 2016Date of Patent: July 4, 2017Assignee: Molecular Assemblies, Inc.Inventors: J. William Efcavitch, Suhaib Siddiqi
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Patent number: 9279149Abstract: The invention provides improved methods for synthesizing polynucleotides, such as DNA and RNA, using enzymes and specially designed nucleotide analogs. Using the methods of the invention, specific sequences of polynucleotides can be synthesized de novo, base by base, in an aqueous environment, without the use of a nucleic acid template. Because the nucleotide analogs have an unmodified 3? OH, i.e., as found in “natural” deoxyribose and ribose molecules, the analogs result in natural polynucleotides suitable for incorporation into biological systems.Type: GrantFiled: August 13, 2014Date of Patent: March 8, 2016Assignee: Molecular Assemblies, Inc.Inventors: J. William Efcavitch, Suhaib Siddiqi
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Patent number: 8808989Abstract: The invention provides improved methods for synthesizing polynucleotides, such as DNA and RNA, using enzymes and specially designed nucleotide analogs. Using the methods of the invention, specific sequences of polynucleotides can be synthesized de novo, base by base, in an aqueous environment, without the use of a nucleic acid template. Because the nucleotide analogs have an unmodified 3? OH, i.e., as found in “natural” deoxyribose and ribose molecules, the analogs result in natural polynucleotides suitable for incorporation into biological systems.Type: GrantFiled: October 17, 2013Date of Patent: August 19, 2014Assignee: Molecular Assemblies, Inc.Inventors: J. William Efcavitch, Suhaib Siddiqi