Patents Assigned to Nexus Biosystems, Inc.
  • Publication number: 20120003067
    Abstract: Within a storage compartment, closely spaced rows of adjacent stacks are supported on a plurality of parallel sliding rails. A pair of coordinated robots is positioned with one robot on one side of the stacks to push the stacks within a selected row toward the other robot. The pushing robot on one side of the row starts off with a starting stack supported in its support arms. The pushing robot pushes the starting stack into one end of the selected row, causing the row to shift toward the waiting receiving robot, which receives the stack at the opposite end of the row from the starting stack. A series of pushes between the two robots moves a stack containing a desired sample into alignment with an access port in the storage compartment.
    Type: Application
    Filed: June 1, 2011
    Publication date: January 5, 2012
    Applicant: NEXUS BIOSYSTEMS, INC.
    Inventor: Robert K. Neeper
  • Publication number: 20110308335
    Abstract: A sample tube (1) is provided with a top opening (2) that is surrounded by side walls (3) which merge into a bottom (4), the bottom (4) of the sample tube (1) comprising an essentially flat downside (5) that is arranged farther to the top opening (2), wherein the sample tube comprises an identification portion (6) located at the bottom side of the sample tube (1). The sample tube (1) according to the present invention is characterized in that the identification portion (6) is composed of an opaque material (7) with a first color and a transparent cover layer (8), wherein the transparent cover layer (8) comprises a laser sensitive filler that, upon irradiation with a laser marking beam, turns an irradiated area (9) of the transparent cover layer (8) into an opaque area with a second color that is contrasting from the first color.
    Type: Application
    Filed: August 11, 2009
    Publication date: December 22, 2011
    Applicant: NEXUS BIOSYSTEMS, INC.
    Inventors: Rosa Pink, Martin Berger
  • Publication number: 20110237459
    Abstract: In a multiplexed assay, each molecule of a plurality of molecules is attached to a support matrix with a substrate adapted for attachment and/or synthesis of molecules and an integrally-formed memory device with an optically-encoded identifier to uniquely identify the molecule attached to the substrate. The molecules are exposed to one or more processing conditions then placed within the path of an optical detector adapted to read the optically-encoded identifier and measure biochemical processes on each support matrix. The support matrices may be singulated to be read by the optical detector one at a time.
    Type: Application
    Filed: June 10, 2011
    Publication date: September 29, 2011
    Applicant: NEXUS BIOSYSTEMS, INC.
    Inventors: Michael P. Nova, Andrew E. Senyei, Zahra Parandoosh, Gary S. David, Xiao-Yi Xiao
  • Publication number: 20110212857
    Abstract: In a multiplexed assay, each molecule of a plurality of molecules is attached to a support matrix with a substrate adapted for attachment and/or synthesis of molecules and an integrally-formed memory device with an optically-encoded identifier to uniquely identify the molecule attached to the substrate. The molecules are exposed to one or more processing conditions then placed within the path of an optical detector adapted to read the optically-encoded identifier and measure biochemical processes on each support matrix. The support matrices may besingulated to be read by the optical detector one at a time.
    Type: Application
    Filed: May 2, 2011
    Publication date: September 1, 2011
    Applicant: NEXUS BIOSYSTEMS, INC.
    Inventors: Michael P. Nova, Andrew E. Senyei, Zahra Parandoosh, Gary S. David, Xiao-Yi Xiao
  • Patent number: 7975746
    Abstract: A container or array of containers that is are sealed with a peelable seal is transported via a conveyor along a processing path toward a desealing station at which an adhesive surface having a width substantially the same as or greater than the width of the seal is pressed against the upper surface of the peelable seal. A collection rod applies a downward pressure on the adhesive surface, pressing it against the seal and keeping the container or container array in position on the conveyor as the plate moves with the conveyor. As the leading edge of the seal passes the collection rod, the adhesive surface is rolled upward, away from the plane of the seal, pulling up on the leading edge of the seal to separate it from the container or container array while the container or container array is held down by the roller. The removed seal is then discarded.
    Type: Grant
    Filed: December 14, 2009
    Date of Patent: July 12, 2011
    Assignee: Nexus Biosystems, Inc.
    Inventors: Robert K. Neeper, Rhett L. Affleck, Roger Howard
  • Publication number: 20110121001
    Abstract: A storage unit for biological samples has a horizontal footprint and multiple storage compartments separated by partitions and enclosed by a frame. The storage compartments have first and second openings and are fitted to the shape of a biopsy cassette or a glass slide and have a retention mechanism preventing the substantially vertical cassettes or slides in the storage compartments from falling out through the first opening and/or the second opening. A transfer system allows at least two storage units or at least one storage unit and one collection unit to be situated one above the other in alignment and displaced in relation to one another. The transfer system has a manipulator by which a biopsy cassette or a glass slide may be pushed from one storage unit to another, or into the collection unit.
    Type: Application
    Filed: November 5, 2010
    Publication date: May 26, 2011
    Applicant: Nexus Biosystems, Inc.
    Inventors: Donat Elsener, Dietmar Reisch
  • Patent number: 7935659
    Abstract: Combinations, called matrices with memories, of matrix materials with remotely addressable or remotely programmable recording devices that contain at least one data storage unit are provided. The matrix materials are those that are used in as supports in solid phase chemical and biochemical syntheses, immunoassays and hybridization reactions. The matrix materials may additionally include fluophors or other luminescent moieties to produce luminescing matrices with memories. The data storage units are non-volatile antifuse memories or volatile memories, such as EEPROMS, DRAMS or flash memory. By virtue of this combination, molecules and biological particles, such as phage and viral particles and cells, that are in proximity or in physical contact with the matrix combination can be labeled by programming the memory with identifying information and can be identified by retrieving the stored information. Combinations of matrix materials, memories, and linked molecules and biological materials are also provided.
    Type: Grant
    Filed: December 14, 2004
    Date of Patent: May 3, 2011
    Assignee: Nexus Biosystems, Inc.
    Inventors: Michael P. Nova, Andrew E. Senyei, Zahra Parandoosh, Gary S. David, Xiao-Yi Xiao
  • Publication number: 20110089709
    Abstract: A gripper apparatus for removing and replacing objects such as containers or vials in an array of containers has a gripper head which extends downward from a support arm, a planetary gear assembly mounted in the gripper head including at least three planet gears, and at least one gripping pin extending downward from each planet gear and projecting beyond a lower end of the gripper head. A drive motor drives the planetary gear assembly to rotate the planet gears in opposite directions, moving the pins inward and outward along predetermined paths to grip and carry an object and release the object when in a desired location.
    Type: Application
    Filed: October 20, 2010
    Publication date: April 21, 2011
    Applicant: NEXUS BIOSYSTEMS, INC.
    Inventor: Robert K. Neeper
  • Patent number: 7858044
    Abstract: A dual-use, high density plate for storage and assays includes a frame including a matrix of wells. The matrix includes preferably 3456 wells with top portions being arranged preferably approximately flush with a plane of the frame. A solvent-resistant material such as cyclo-olefin polymer forms at least the bottom portions of the wells, and preferably the same solvent resistant material forms the frame, although varying from the bottoms of the wells by being rendered opaque. Evaporation control wells are preferably included at the periphery of the matrix for reducing effects of evaporation on edge wells.
    Type: Grant
    Filed: April 30, 2004
    Date of Patent: December 28, 2010
    Assignee: Nexus Biosystems, Inc.
    Inventors: Peter J. Coassin, Todd Bennett, Brian Grot, David Nicol
  • Patent number: 7854898
    Abstract: The present invention relates to multi-well platforms, lids, caddies and any combination thereof. The multi-well platforms comprise a plurality of wells that can be of any shape and can be arranged in any ornamental pattern. The lid comprises an area corresponding to the well field. The caddy has a footprint approximately that of a standard 96-well microtiter plate. When the multi-well platform is engaged with the caddy, the wells of the well-field of the multi-well platform are preferably not obscured by the caddy when viewed from the bottom of the combination.
    Type: Grant
    Filed: November 14, 2008
    Date of Patent: December 21, 2010
    Assignee: Nexus Biosystems, Inc.
    Inventors: Andrew A. Pham, Peter J. Coassin, Alec Tate Harootunian, Peter N. Pham, Harry Stylli, Roger Y. Tsien
  • Patent number: 7793842
    Abstract: An automated storage system for storing large quantities of samples in trays includes a storage compartment, a tray shuttle compartment abutting the storage compartment on one side and a plurality of independent modules on the other side. The modules perform processing of samples that are retrieved from the storage compartment by a tray shuttle, including extraction of selected samples from retrieved source trays and transfer of the selected samples into a separate, destination tray that can be further processed or removed from the system for use. The independent operation of the modules permits handling and processing to be performed simultaneously by different modules while the tray shuttle accesses additional samples within the storage compartment. In one embodiment, a vertical carousel is used to vertically align a desired tray with the tray shuttle, while the tray shuttle operates within a horizontal plane.
    Type: Grant
    Filed: October 27, 2007
    Date of Patent: September 14, 2010
    Assignee: Nexus Biosystems, Inc.
    Inventors: Robert K. Neeper, Rhett L Affleck, John E. Lillig
  • Publication number: 20100089537
    Abstract: A container or array of containers that is are sealed with a peelable seal is transported via a conveyor along a processing path toward a desealing station at which an adhesive surface having a width substantially the same as or greater than the width of the seal is pressed against the upper surface of the peelable seal. A collection rod applies a downward pressure on the adhesive surface, pressing it against the seal and keeping the container or container array in position on the conveyor as the plate moves with the conveyor. As the leading edge of the seal passes the collection rod, the adhesive surface is rolled upward, away from the plane of the seal, pulling up on the leading edge of the seal to separate it from the container or container array while the container or container array is held down by the roller. The removed seal is then discarded.
    Type: Application
    Filed: December 14, 2009
    Publication date: April 15, 2010
    Applicant: NEXUS BIOSYSTEMS, INC.
    Inventors: Robert K. Neeper, Rhett L. Affleck, Roger Howard
  • Patent number: 7648321
    Abstract: An automated storage system for storing large quantities of samples in trays includes a storage compartment, a tray shuttle compartment abutting the storage compartment on one side and a plurality of independent modules on the other side. The modules perform processing of samples that are retrieved from the storage compartment by a tray shuttle, including extraction of selected samples from retrieved source trays and transfer of the selected samples into a separate, destination tray that can be further processed or removed from the system for use. The independent operation of the modules permits handling and processing to be performed simultaneously by different modules while the tray shuttle accesses additional samples within the storage compartment. In one embodiment, a vertical carousel is used to vertically align a desired tray with the tray shuttle, while the tray shuttle operates within a horizontal plane.
    Type: Grant
    Filed: October 27, 2007
    Date of Patent: January 19, 2010
    Assignee: Nexus Biosystems, Inc.
    Inventors: Robert K. Neeper, Rhett L. Affleck, John E. Lillig
  • Patent number: 7635246
    Abstract: An automated storage system for storing large quantities of samples in trays includes a storage compartment, a tray shuttle compartment abutting the storage compartment on one side and a plurality of independent modules on the other side. The modules perform processing of samples that are retrieved from the storage compartment by a tray shuttle, including extraction of selected samples from retrieved source trays and transfer of the selected samples into a separate, destination tray that can be further processed or removed from the system for use. The independent operation of the modules permits handling and processing to be performed simultaneously by different modules while the tray shuttle accesses additional samples within the storage compartment. In one embodiment, a vertical carousel is used to vertically align a desired tray with the tray shuttle, while the tray shuttle operates within a horizontal plane.
    Type: Grant
    Filed: October 27, 2007
    Date of Patent: December 22, 2009
    Assignee: Nexus Biosystems, Inc.
    Inventors: Robert K. Neeper, Rhett L Affleck, John E. Lillig
  • Patent number: 7596251
    Abstract: An automated biological sample analysis system and method for use in incubating and analyzing multiple samples for protein crystallization. A temperature controlled cabinet houses sample storage, sample transport, and sample imaging systems. The operation of the system is automated and can be controlled by software, which can be reconfigured remotely. An array of storage shelves includes multiple shelf columns arranged around a core. Multiple banks of removable shelves arranged as magazines are accessed through a door on the cabinet. Each shelf stores a multi-well plate and different sizes can be stored in different shelves. The core houses a sample transport system that includes a multi-axis robot that rotates about a vertical axis to access the shelves in the shelf array. The transport system retrieves and replaces the multi-well plates in the shelves and can move plates from the shelves to an imaging system where each sample can be automatically imaged.
    Type: Grant
    Filed: January 30, 2004
    Date of Patent: September 29, 2009
    Assignee: Nexus Biosystems, Inc.
    Inventors: Rhett L. Affleck, Mike Bodnar, Robert K. Levin, John E. Lillig, Robert K. Neeper
  • Publication number: 20090226891
    Abstract: Combinations, called matrices with memories, of matrix materials with remotely addressable or remotely programmable recording devices that contain at least one data storage unit are provided. The matrix materials are those that are used in as supports in solid phase chemical and biochemical syntheses, immunoassays and hybridization reactions. The matrix materials may additionally include fluophors or other luminescent moieties to produce luminescing matrices with memories. The data storage units are non-volatile antifuse memories or volatile memories, such as EEPROMS, DRAMS or flash memory. By virtue of this combination, molecules and biological particles, such as phage and viral particles and cells, that are in proximity or in physical contact with the matrix combination can be labeled by programming the memory with identifying information and can be identified by retrieving the stored information. Combinations of matrix materials, memories, and linked molecules and biological materials are also provided.
    Type: Application
    Filed: December 14, 2004
    Publication date: September 10, 2009
    Applicant: NEXUS BIOSYSTEMS, INC.
    Inventors: Michael Nova, Andrew Senyei, Zahra Parandoosh, Gary David, Xiao-Yi Xiao
  • Publication number: 20080216955
    Abstract: A container or array of containers that is are sealed with a peelable seal is transported via a conveyor along a processing path toward a desealing station at which an adhesive surface having a width substantially the same as or greater than the width of the seal is pressed against the upper surface of the peelable seal. A collection rod applies a downward pressure on the adhesive surface, pressing it against the seal and keeping the container or container array in position on the conveyor as the plate moves with the conveyor. As the leading edge of the seal passes the collection rod, the adhesive surface is rolled upward, away from the plane of the seal, pulling up on the leading edge of the seal to separate it from the container or container array while the container or container array is held down by the roller. The removed seal is then discarded.
    Type: Application
    Filed: March 10, 2008
    Publication date: September 11, 2008
    Applicant: NEXUS BIOSYSTEMS, INC.
    Inventors: Robert K. Neeper, Rhett L. Affleck, Roger Howard
  • Patent number: 7421831
    Abstract: The system for removing or replacing caps for vials in a fixed array includes a removable cartridge with a plurality of sets of gripper plates corresponding to the number of columns in the array. Each plate has a plurality of gripper arms corresponding to the number of rows in the array. The gripper arms have hooked ends which are oriented in opposite directions in each set of plates. Relative positioning of the gripper arms is varied by one or more rotating cams, which cause the gripper arms on one plate of each set to move relative to the gripper arms of the other plate(s) of the set, varying the combined width and/or relative angle of the gripper arms to manipulate a cap inserted into the end of each vial. The plurality of plate sets and gripper arms allow all vials in the array to be capped or de-capped simultaneously.
    Type: Grant
    Filed: November 1, 2006
    Date of Patent: September 9, 2008
    Assignee: Nexus Biosystems, Inc.
    Inventors: Robert K. Neeper, John Bridwell
  • Patent number: RE39571
    Abstract: The present invention provides labeled synthetic libraries of random oligomers and methods and apparatus for generating labeled synthetic oligomer libraries. Each member of such a library is labeled with a unique identifier tag that specifies the structure or sequence of the oligomer. In a preferred embodiment of the present invention the identifier tag is a microchip that is pre-encoded or encodable with information that is related back to a detector when the identifier tag is pulsed with electromagnetic radiation.
    Type: Grant
    Filed: May 7, 2004
    Date of Patent: April 17, 2007
    Assignee: Nexus Biosystems, Inc.
    Inventor: John Cargill
  • Patent number: RE39606
    Abstract: The present invention provides labeled synthetic libraries of random oligomers and methods and apparatus for generating labeled synthetic oligomer libraries. Each member of such a library is labeled with a unique identifier tag that specifies the structure or sequence of the oligomer. In a preferred embodiment of the present invention the identifier tag is a microchip that is pre-encoded or encodable with information that is related back to a detector when the identifier tag is pulsed with electromagnetic radiation.
    Type: Grant
    Filed: May 7, 2004
    Date of Patent: May 1, 2007
    Assignee: Nexus Biosystems, Inc.
    Inventor: John Cargill