Abstract: Methods, systems and apparatus, including computer programs encoded on computer storage medium, for controlling operations of machine tool workstations. Machine tool workstations are grouped into functional groups. Neural networks corresponding to the functional groups are trained to process respective inputs representing parts to be processed to generate respective outputs representing sequences of ordered subsets of the parts that produce a reduced setup time for workstations in the functional groups. Data representing respective collections of parts to be processed by workstations included in the functional groups is processed using the trained neural networks to generate corresponding sequences of ordered subsets of the collection of parts. Average delay times associated with the generated sequences of ordered subsets of the collection of parts are computed.