Patents Assigned to Synthetic Genomics, Inc.
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Patent number: 11193132Abstract: Mutant photosynthetic organisms having reduced chlorophyll and increased photosynthetic efficiency are provided. The mutant strains have mutated or attenuated: chloroplastic SRP54 gene and SGI1 gene; chloroplastic SRP54 gene and SGI2 gene; chloroplastic SRP54 gene, SGI1, and SGI2 genes are disclosed. The mutant photosynthetic organisms exhibit increased productivity with respect to wild-type strains. Also provided are mutant photosynthetic organisms having mutated or attenuated cytosolic SRP54 genes. Provided herein are methods of producing biomass and other products such as lipids using strains having mutations in an SRP54 gene, SGI1, SGI2 genes, a combination of SGI1/SRP54, and a combination of SGI2 and SRP54 genes. Also included are constructs and methods for attenuating or disrupting SRP54, SGI1, and SGI2 genes.Type: GrantFiled: December 27, 2018Date of Patent: December 7, 2021Assignee: Synthetic Genomics, Inc.Inventors: Imad Ajjawi, Fedor I. Kuzminov, Randor R. Radakovits, John H. Verruto, Sarah Potts, Roberto Spreafico, William F. Lambert, Jessica Greiner
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Patent number: 11162106Abstract: The present application provides novel algal regulatory elements including inducible nitrate/nitrite promoter sequences and terminator sequences. The application further discloses DNA constructs comprising these novel regulatory elements, and recombinant microorganisms comprising these regulatory elements. Methods of modifying, producing, and using the regulatory elements are also disclosed. Methods disclosed in the present application are suited for inducible expressions of genes, such as a transgene or a native gene in algal species.Type: GrantFiled: December 18, 2019Date of Patent: November 2, 2021Assignee: Synthetic Genomics, Inc.Inventors: John Verruto, Jessica Weir
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Patent number: 11124798Abstract: The present invention provides mutant microorganisms having attenuated expression of a gene encoding a polypeptide that includes a TPR domain, wherein the mutant microorganisms have higher lipid productivity and/or exhibit increased partitioning of carbon to lipid as compared to wild type microorganisms from which they are derived. Also provided are methods of producing lipids using the mutant microorganisms, guide RNAs, and nucleic acid constructs used for producing mutant microorganisms.Type: GrantFiled: December 7, 2018Date of Patent: September 21, 2021Assignee: Synthetic Genomics, Inc.Inventors: John Verruto, Eric Moellering, Imad Ajjawi
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Patent number: 11098328Abstract: The present invention provides mutant microorganisms having attenuated expression of a gene encoding a polypeptide that includes a GAF domain wherein the mutant microorganisms have higher lipid productivity and/or exhibit increased partitioning of carbon to lipid as compared to wild-type microorganisms from which they are derived. Also provided are methods of producing lipids using the mutant microorganisms, guide RNAs, and nucleic acid constructs used for producing mutant microorganisms.Type: GrantFiled: December 4, 2018Date of Patent: August 24, 2021Assignee: Synthetic Genomics, Inc.Inventor: Imad Ajjawi
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Patent number: 11046979Abstract: The present invention provides a mutant algal microorganism that has a mutation that causes attenuated expression of TrifuncB and/or TrifuncA and as a result produces more lipids than a control algal microorganism. The mutant algal microorganism can further include a mutation in a gene encoding a peroxisomal beta-oxidation pathway protein, such as an ACO1 or PXA1 gene, or a glyoxylate pathway protein, such as an ICL1 gene, that results in attenuated expression and further increased lipid production. Furthermore, provided herein are methods of producing lipids using the mutant algal microorganisms and methods of making the mutant microorganisms.Type: GrantFiled: July 22, 2019Date of Patent: June 29, 2021Assignee: Synthetic Genomics, Inc.Inventors: Eric R. Moellering, Tom Carlson
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Patent number: 10968259Abstract: Disclosed herein are mutant photosynthetic microorgnaisms having an attenuated SGI1 gene. The mutants have reduced chlorophyll and increased productivity with respect to wild type cells. Also disclosed are methods of using such mutants for producing biomass or bioproducts, and methods of screening for such mutants.Type: GrantFiled: December 29, 2017Date of Patent: April 6, 2021Assignee: Synthetic Genomics, Inc.Inventors: Eric R. Moellering, Nicholas Bauman, Randor R. Radakovits, Roberto Spreafico, Fedor Kuzminov, Imad Ajjawi, Saheed Imam, Andrew Schultz, Kathleen Kwok, Moena Aqui, Jennifer Nominati, John Verruto, Shaun Bailey
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Patent number: 10864264Abstract: New influenza donor strains for the production of reassortant influenza B viruses are provided.Type: GrantFiled: October 18, 2019Date of Patent: December 15, 2020Assignees: Seqirus UK Limited, Synthetic Genomics, Inc.Inventors: Philip Dormitzer, Peter Mason, Pirada Suphaphiphat, Raul Gomila
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Publication number: 20200215184Abstract: New influenza donor strains for the production of reassortant influenza B viruses are provided.Type: ApplicationFiled: October 18, 2019Publication date: July 9, 2020Applicants: Seqirus UK Limited, Synthetic Genomics, Inc.Inventors: Philip DORMITZER, Peter MASON, Pirada SUPHAPHIPHAT, Raul GOMILA
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Patent number: 10689676Abstract: The present invention provides mutant microorganism that have higher lipid productivity than the wild type microorganisms from which they are derived while producing biomass at levels that are at least 45% of wild type biomass productivity under nitrogen replete conditions. Particular mutants produce at least 50% as much FAME lipid as wild type while producing at least the amount of biomass produced by wild type cells under nitrogen replete conditions. Also provided are methods of producing lipid using the mutant strains.Type: GrantFiled: November 2, 2016Date of Patent: June 23, 2020Assignee: Synthetic Genomics, Inc.Inventors: Imad Ajjawi, Leah Soriaga, Moena Aqui, Eric R. Moellering
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Patent number: 10683514Abstract: The application provides recombinant microorganisms with increased productivity with respect to control or wildtype microorganisms. The recombinant microorganisms can include a non-native gene encoding a SKP1 polypeptide or a CHORD-derived polypeptide. Increased productivity can be increased biomass or lipid productivity. These recombinant microorganisms can be used to produce products of interest.Type: GrantFiled: July 11, 2019Date of Patent: June 16, 2020Assignee: Synthetic Genomics, Inc.Inventors: Nicholas Bauman, Imad Ajjawi
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Publication number: 20200172877Abstract: Improved methods for the production of reassortant influenza viruses are provided.Type: ApplicationFiled: September 26, 2019Publication date: June 4, 2020Applicants: Seqirus UK Limited, Synthetic Genomics, Inc.Inventors: Philip DORMITZER, Peter MASON, Pirada SUPHAPHIPHAT, Daniel GIBSON, David WENTWORTH, Timothy STOCKWELL, John GLASS
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Publication number: 20200155666Abstract: New influenza donor strains for the production of reassortant influenza A viruses are provided.Type: ApplicationFiled: October 28, 2019Publication date: May 21, 2020Applicants: Synthetic Genomics, Inc.Inventors: Peter MASON, Philip Ralph DORMITZER, Heidi TRUSHEIM, Pirada SUPHAPHIPHAT
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Patent number: 10563232Abstract: The present invention provides mutant microorganism that have higher lipid productivity than the wild type microorganisms from which they are derived while biomass at levels that are within approximately 50% of wild type biomass productivities under nitrogen replete conditions. Particular mutants produce at least twice as much FAME lipid as wild type while producing at least 75% of the biomass produced by wild type cells under nitrogen replete conditions. Also provided are methods of producing lipid using the mutant strains.Type: GrantFiled: February 5, 2019Date of Patent: February 18, 2020Assignee: Synthetic Genomics, Inc.Inventors: Imad Ajjawi, Eric R. Moellering, Leah Soriaga, Moena Aqui
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Patent number: 10544424Abstract: Mutant photosynthetic microorganisms having reduced chlorophyll and increased photosynthetic efficiency are provided. The mutant strains have mutated chloroplastic SRP54 genes and exhibit increased productivity with respect to wild type strains. Also provided are mutant algal strains having mutated cytosolic SRP54 genes. Provided herein are methods of producing biomass and other products such as lipids using strains having mutations in an SRP54 gene. Also included are constructs and methods for attenuating or disrupting SRP54 genes.Type: GrantFiled: April 15, 2016Date of Patent: January 28, 2020Assignee: Synthetic Genomics, Inc.Inventors: Christen G. DiPetrillo, Jay McCarren, Leah Soriaga
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Patent number: 10500266Abstract: New influenza donor strains for the production of reassortant influenza A viruses are provided.Type: GrantFiled: June 13, 2017Date of Patent: December 10, 2019Assignees: Seqirus UK Limited, Synthetic Genomics, Inc.Inventors: Peter Mason, Philip Ralph Dormitzer, Heidi Trusheim, Pirada Suphaphiphat
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Patent number: 10377997Abstract: The present disclosure relates to the seminal discovery of a generation and use of genetically engineered Vibrio sp. Provided is the use of the genetically engineered bacteria for the construction, maintenance, manipulation, and/or propagation of DNA constructs; protein expression; protein secretion; vectors and other metabolic tools; metabolic engineering; expression of cellular extracts for cell-free biology; shuttle vectors; cloning vectors; and for synthetic biology applications. The disclosure also relates to the use of the replication machinery of Vibrio sp. as a cloning or expression vector for replication of recombinant DNA constructs. The disclosure also relates to methods of use of the above.Type: GrantFiled: December 1, 2016Date of Patent: August 13, 2019Assignee: Synthetic Genomics, Inc.Inventors: Matthew T Weinstock, Christopher M. Wilson, Eric D. Hesek
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Patent number: 10351869Abstract: The application provides recombinant microorganisms with increased productivity with respect to control or wildtype microorganisms. The recombinant microorganisms can include a non-native gene encoding a SKP1 polypeptide or a CHORD-derived polypeptide. Increased productivity can be increased biomass or lipid productivity. These recombinant microorganisms can be used to produce products of interest.Type: GrantFiled: September 2, 2016Date of Patent: July 16, 2019Assignee: Synthetic Genomics, Inc.Inventors: Nicholas Bauman, Imad Ajjawi
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Patent number: 10351860Abstract: The present invention relates to the seminal discovery of a highly efficient method of transforming algal cells. Specifically, the invention relates to a novel method of delivering a plasmid containing a nucleic acid molecule to algal cells by bacterial conjugation wherein the plasmid remains episomal in the algal cell through multiple generations.Type: GrantFiled: February 19, 2016Date of Patent: July 16, 2019Assignee: Synthetic Genomics, Inc.Inventors: Bogumil Karas, Christopher L. Dupont, Philip D. Weyman, Andrew E. Allen
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Patent number: 10329537Abstract: The invention provides reassortant influenza strains.Type: GrantFiled: June 6, 2014Date of Patent: June 25, 2019Assignees: Seqirus UK Limited, Synthetic Genomics, Inc.Inventors: Peter Mason, Pirada Suphaphiphat, Raul Gomila, Philip Dormitzer
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Patent number: 10266865Abstract: The present invention relates to methods of joining two or more double-stranded (ds) or single-stranded (ss) DNA molecules of interest in vitro, wherein the distal region of the first DNA molecule and the proximal region of the second DNA molecule of each pair share a region of sequence identity. The method allows the joining of a large number of DNA fragments, in a predetermined order and orientation, without the use of restriction enzymes. It can be used, e.g., to join synthetically produced sub-fragments of a gene or genome of interest. Kits for performing the method are also disclosed. The methods of joining DNA molecules may be used to generate combinatorial libraries useful to generate, for example, optimal protein expression through codon optimization, gene optimization, and pathway optimization.Type: GrantFiled: March 2, 2015Date of Patent: April 23, 2019Assignee: Synthetic Genomics, Inc.Inventors: Daniel G. Gibson, Hamilton O. Smith, Clyde A. Hutchison, Lei Young, J. Craig Venter