Patents Assigned to Torrey Pines Institute for Molecular Studies
  • Patent number: 9233159
    Abstract: Methods and compositions for treating pain are disclosed. The compositions are based on dry powders comprising microparticles of diketopiperazines and an analgesic active agent. The analgesic in the compositions comprises one or more peptide analgesics or derivatives thereof, which are administered to a subject using a pulmonary inhalation drug delivery system comprising a dry powder inhaler and the analgesic composition. The present compositions produce fewer side effects associated with current opioid therapy.
    Type: Grant
    Filed: October 24, 2012
    Date of Patent: January 12, 2016
    Assignees: MannKind Corporation, Torrey Pines Institute for Molecular Studies
    Inventors: Andrea Leone-Bay, Richard A. Houghten, Joseph J. Guarneri, Grayson W. Stowell
  • Patent number: 8663633
    Abstract: Methods for identifying modified proteases with modified substrate specificity or other properties are provided. The methods screen candidate and modified proteases by contacting them with a substrate, such as a serpin, an alpha macroglobulins or a p35 family protein or modified serpins and modified p35 family members or modified alpha macroglobulins, that, upon cleavage of the substrate, traps the protease by forming a stable complex. Also provided are modified proteases.
    Type: Grant
    Filed: July 2, 2012
    Date of Patent: March 4, 2014
    Assignees: Torrey Pines Institute for Molecular Studies, Catalyst Biosciences, Inc.
    Inventor: Edwin L. Madison
  • Publication number: 20130101617
    Abstract: Embodiments of the present invention are drawn to pure forms of human or simian immunodeficiency virus trimeric gp120/gp41 Env protein (Env trimers) and methods for making them. These embodiments address the need for an authentic immunogen lacking uncleaved gp160 Env protein and/or other forms of Env, such as gp41 “stumps” dissociated from gp120, which interfere with neutralizing antibody production in a vaccinated subject.
    Type: Application
    Filed: June 29, 2011
    Publication date: April 25, 2013
    Applicant: TORREY PINES INSTITUTE FOR MOLECULAR STUDIES
    Inventor: James Binley
  • Patent number: 8211428
    Abstract: Methods for identifying modified proteases with modified substrate specificity or other properties are provided. The methods screen candidate and modified proteases by contacting them with a substrate, such as a serpin, an alpha macroglobulins or a p35 family protein or modified serpins and modified p35 family members or modified alpha macroglobulins, that, upon cleavage of the substrate, traps the protease by forming a stable complex. Also provided are modified proteases.
    Type: Grant
    Filed: July 5, 2007
    Date of Patent: July 3, 2012
    Assignees: Torrey Pines Institute for Molecular Studies, Catalyst Biosciences, Inc.
    Inventor: Edwin L. Madison
  • Patent number: 8044029
    Abstract: Disclosed herein are methods for the treatment of autoimmune or immune related diseases or disorders. Also disclosed are methods for treating such autoimmune or immune related diseases or disorders with the administration of sulfatides. Also disclosed herein are methods of treating autoimmune or immune related diseases or disorders by administering an amount of a sulfatide to the body of a patient effective to reduce or prevent the symptoms of the autoimmune or immune related disease or disorder.
    Type: Grant
    Filed: September 28, 2006
    Date of Patent: October 25, 2011
    Assignee: Torrey Pines Institute for Molecular Studies
    Inventor: Vipin Kumar Chaturvedi
  • Publication number: 20110183358
    Abstract: The invention provides isolated agents having novel chemical structures and possessing superior activity as derepressors of IAP inhibited caspase. The invention further provides a method of derepressing an IAP-inhibited caspase. The invention further provides assay methods employing labeled compounds of the invention, especially fluorescent labeled compounds.
    Type: Application
    Filed: March 17, 2006
    Publication date: July 28, 2011
    Applicants: THE BURNHAM INSTITUTE, TORREY PINES INSTITUTE FOR MOLECULAR STUDIES
    Inventors: John C. Reed, Richard A. Houghten, Adel Nefzi, John M. Ostresh, Kate Welsh, Clemencia Pinilla
  • Patent number: 7879558
    Abstract: This invention relates to the diagnosis and monitoring of ischemia, including but not limited to myocardial and cerebral ischemia, by measuring the concentration of molecules that do not originate from the ischemic tissue but whose concentration in the blood and other fluids changes as a consequence of the ischemic state.
    Type: Grant
    Filed: August 20, 2007
    Date of Patent: February 1, 2011
    Assignee: Torrey Pines Institute for Molecular Studies
    Inventor: Alan Kleinfeld
  • Publication number: 20100080784
    Abstract: Disappearance of a cell population, designated CD4+ CD44v.low, has been shown to be associated with cachexia and lymphopenia, and those conditions can be treated or delayed by administering those cells to a patient. In addition, disclosed are assays for those cells for diagnosing or prognosticating cachexia and/or lymphopenia and the end of the honeymoon period in Type I diabetes. Furthermore, disclosed herein are methods related to the use of CD4+ CD44v.low cells in promoting insulin-secreting beta cell mass.
    Type: Application
    Filed: September 10, 2009
    Publication date: April 1, 2010
    Applicant: TORREY PINES INSTITUTE FOR MOLECULAR STUDIES
    Inventor: Joanna Davies
  • Patent number: 7569547
    Abstract: Small, polybasic peptides are disclosed that are effective as furin inhibitors, e.g. hexa- to nona-peptides having L-Arg or L-Lys in most positions. Removing the peptide terminating groups can improve inhibition of furin. High inhibition was seen in a series of non-amidated and non-acetylated polyarginines. The most potent inhibitor identified to date, nona-L-arginine, had a Ki against furin of 40 nM. Non-acetylated, poly-D-arginine-derived molecules are preferred furin inhibitors for therapeutic uses, such as inhibiting certain bacterial infections, viral infections, and cancers. Due to their relatively small size, these peptides should be non-immunogenic. These peptides are efficiently transported across cell membranes.
    Type: Grant
    Filed: April 21, 2006
    Date of Patent: August 4, 2009
    Assignees: Board of Supervisors of Louisiana State University and Agricultural and Mechanical College, Torrey Pines Institute for Molecular Studies
    Inventors: Iris Lindberg, Angus Cameron, Richard A. Houghten, Jon Richard Appel
  • Publication number: 20070286849
    Abstract: Disclosed herein are methods for the treatment of autoimmune or immune related diseases or disorders. Also disclosed are methods for treating such autoimmune or immune related diseases or disorders with the administration of expanded populations of regulatory T cells. Also disclosed herein are methods of treating autoimmune or immune related diseases or disorders by administering an amount of expanded regulatory T cells to the body of a patient effective to reduce or prevent the symptoms of the autoimmune or immune related disease or disorder.
    Type: Application
    Filed: May 15, 2007
    Publication date: December 13, 2007
    Applicant: Torrey Pines Institute for Molecular Studies
    Inventor: Vipin Chaturvedi
  • Patent number: 7262017
    Abstract: This invention relates to the diagnosis and monitoring of ischemia, including but not limited to myocardial and cerebral ischemia, by measuring the concentration of molecules that do not originate from the ischemic tissue but whose concentration in the blood and other fluids changes as a consequence of the ischemic state.
    Type: Grant
    Filed: September 13, 2002
    Date of Patent: August 28, 2007
    Assignee: Torrey Pines Institute for Molecular Studies
    Inventor: Alan Kleinfeld
  • Patent number: 7229621
    Abstract: The present invention is related to a method for enhancing the immunogenicity of an antigen in a mammal by introducing into the mammal an antigen or a portion thereof and administering to the mammal a treatment that increases antigen presentation in a lymphoid organ.
    Type: Grant
    Filed: March 15, 2001
    Date of Patent: June 12, 2007
    Assignee: Torrey Pines Institute for Molecular Studies
    Inventor: Carol O. Cowing
  • Patent number: 7217688
    Abstract: The invention provides isolated agents having novel chemical structures and possessing superior activity as derepressors of IAP inhibited caspase. The invention further provides a method of derepressing an IAP-inhibited caspase. The invention further provides assay methods employing labeled compounds of the invention, especially fluorescent labeled compounds.
    Type: Grant
    Filed: July 19, 2005
    Date of Patent: May 15, 2007
    Assignees: The Burnham Institute, Torrey Pines Institute for Molecular Studies
    Inventors: John C. Reed, Richard A. Houghten, Adel Nefzi, John M. Ostresh, Clemencia Pinilla, Kate Welsh
  • Patent number: 6911426
    Abstract: The invention provides isolated agents having a core peptide selected from the group consisting of Core peptides 5 through 39 and 42 through 55, wherein the agent derepresses an IAP-inhibited caspase. Also provided is an isolated agent having a core structure selected from any of the structures shown in FIGS. 5, 9, 10, 14B, and 21-24 wherein said agent derepresses an IAP-inhibited caspase. The invention further provides a method of derepressing an IAP-inhibited caspase. The method consists of contacting an IAP-inhibited caspase with an effective amount of an agent to derepress an IAP-inhibited caspase, the agent having a core motif selected from the group consisting of a core peptide having a sequence set forth in any of Core peptides 4 through 39 and 42 through 55, and a core structure selected from the group consisting of TPI759, TPI882, TPI914 or TPI927.
    Type: Grant
    Filed: November 21, 2002
    Date of Patent: June 28, 2005
    Assignees: The Burnham Institute, Torrey Pines Institute for Molecular Studies
    Inventors: John C. Reed, Richard A. Houghten, Adel Nefzi, John M. Ostresh, Clemencia Pinilla, Kate Welsh
  • Patent number: 6861523
    Abstract: The solid-phase synthesis of individual 1,3-disubstituted and 1,3,5-trisubstituted-1,3,5-triazine-2,4,6-triones and libraries thereof from a resin is described. Reaction of resin-bound amino acids with isocyanates yields resin-bound ureas, which further react with chlorocarbonyl isocyanate to selectively afford the resin-bound 1,3-disubstituted-1,3,5-triazine-2,4,6-triones. Selective alkylation at the N-5 position of the resin-bound 1,3-disubstituted-1,3,5-triazine-2,4,6-triones produces a trisubstituted triazinetrione. The products are cleaved from their solid support and obtained in good yield and purity.
    Type: Grant
    Filed: February 8, 2002
    Date of Patent: March 1, 2005
    Assignee: Torrey Pines Institute for Molecular Studies
    Inventors: Yongping Yu, John M. Ostresh, Richard A. Houghten
  • Patent number: 6809202
    Abstract: The synthesis of individual di- and tri-substituted-1,4-diazacyclic compounds having 6- to 8-atoms in the cyclic ring, their corresponding 1,6-diketo-2,5-diazacyclic compounds and similar 1,4-diazacyclic ring compounds having one ring carbonyl gorup and 6-8 atoms in the ring is disclosed, as are libraries of such compounds. Methods of preparing and using the libraries of compounds as well as individual compounds of the libraries are also disclosed.
    Type: Grant
    Filed: June 6, 2002
    Date of Patent: October 26, 2004
    Assignee: Torrey Pines Institute for Molecular Studies
    Inventors: Adel Nefzi, John M. Ostresh, Richard A. Houghten
  • Patent number: 6750030
    Abstract: A method of detecting cardiac ischemia by detecting elevated levels of serum free fatty acids in serum unbound to serum albumin (FFAU) compared to an average FFAU level in individuals without cardiac ischemia, wherein the detection method uses a free fatty acid binding protein derivatized with a fluorescent moiety, is disclosed.
    Type: Grant
    Filed: April 22, 2002
    Date of Patent: June 15, 2004
    Assignee: Torrey Pines Institute for Molecular Studies
    Inventor: Alan M. Kleinfeld
  • Patent number: 6664282
    Abstract: Individual substituted [3,5,7]-1H-imidazo[1,5-a]imidazol-2(3H)-one compounds and their pharmaceutically-acceptable salts are disclosed, as are libraries of such compounds. Methods of preparing and using the libraries of compounds as well as individual compounds of the libraries are also disclosed.
    Type: Grant
    Filed: May 8, 2002
    Date of Patent: December 16, 2003
    Assignee: Torrey Pines Institute for Molecular Studies
    Inventors: Hassan M. ElAbdellaoui, John M. Ostresh, Richard A. Houghten
  • Patent number: 6545032
    Abstract: Individual substituted [3,5,7]-1H-imidazo[1,5-a]imidazol-2(3H)-one compounds and their pharmaceutically-acceptable salts are disclosed, as are libraries of such compounds. Methods of preparing and using the libraries of compounds as well as individual compounds of the libraries are also disclosed.
    Type: Grant
    Filed: September 12, 2000
    Date of Patent: April 8, 2003
    Assignee: Torrey Pines Institute for Molecular Studies
    Inventors: Hassan M. ElAbdellaoui, John M. Ostresh, Richard A. Houghten
  • Patent number: 6441172
    Abstract: The synthesis of individual di- and tri-substituted-1,4-diazacyclic compounds having 6- to 8-atoms in the cyclic ring, their corresponding 1,6-diketo-2,5-diazacyclic compounds and similar 1,4-diazacyclic ring compounds having one ring carbonyl group and 6-8 atoms in the ring is disclosed, as are libraries of such compounds. Methods of preparing and using the libraries of compounds as well as individual compounds of the libraries are also disclosed.
    Type: Grant
    Filed: May 12, 1999
    Date of Patent: August 27, 2002
    Assignee: Torrey Pines Institute for Molecular Studies
    Inventors: Adel Nefzi, John M. Ostresh, Richard A. Houghten