Patents Assigned to Torrey Pines Institute
  • Patent number: 7262017
    Abstract: This invention relates to the diagnosis and monitoring of ischemia, including but not limited to myocardial and cerebral ischemia, by measuring the concentration of molecules that do not originate from the ischemic tissue but whose concentration in the blood and other fluids changes as a consequence of the ischemic state.
    Type: Grant
    Filed: September 13, 2002
    Date of Patent: August 28, 2007
    Assignee: Torrey Pines Institute for Molecular Studies
    Inventor: Alan Kleinfeld
  • Patent number: 7229621
    Abstract: The present invention is related to a method for enhancing the immunogenicity of an antigen in a mammal by introducing into the mammal an antigen or a portion thereof and administering to the mammal a treatment that increases antigen presentation in a lymphoid organ.
    Type: Grant
    Filed: March 15, 2001
    Date of Patent: June 12, 2007
    Assignee: Torrey Pines Institute for Molecular Studies
    Inventor: Carol O. Cowing
  • Patent number: 7217688
    Abstract: The invention provides isolated agents having novel chemical structures and possessing superior activity as derepressors of IAP inhibited caspase. The invention further provides a method of derepressing an IAP-inhibited caspase. The invention further provides assay methods employing labeled compounds of the invention, especially fluorescent labeled compounds.
    Type: Grant
    Filed: July 19, 2005
    Date of Patent: May 15, 2007
    Assignees: The Burnham Institute, Torrey Pines Institute for Molecular Studies
    Inventors: John C. Reed, Richard A. Houghten, Adel Nefzi, John M. Ostresh, Clemencia Pinilla, Kate Welsh
  • Patent number: 6911426
    Abstract: The invention provides isolated agents having a core peptide selected from the group consisting of Core peptides 5 through 39 and 42 through 55, wherein the agent derepresses an IAP-inhibited caspase. Also provided is an isolated agent having a core structure selected from any of the structures shown in FIGS. 5, 9, 10, 14B, and 21-24 wherein said agent derepresses an IAP-inhibited caspase. The invention further provides a method of derepressing an IAP-inhibited caspase. The method consists of contacting an IAP-inhibited caspase with an effective amount of an agent to derepress an IAP-inhibited caspase, the agent having a core motif selected from the group consisting of a core peptide having a sequence set forth in any of Core peptides 4 through 39 and 42 through 55, and a core structure selected from the group consisting of TPI759, TPI882, TPI914 or TPI927.
    Type: Grant
    Filed: November 21, 2002
    Date of Patent: June 28, 2005
    Assignees: The Burnham Institute, Torrey Pines Institute for Molecular Studies
    Inventors: John C. Reed, Richard A. Houghten, Adel Nefzi, John M. Ostresh, Clemencia Pinilla, Kate Welsh
  • Patent number: 6861523
    Abstract: The solid-phase synthesis of individual 1,3-disubstituted and 1,3,5-trisubstituted-1,3,5-triazine-2,4,6-triones and libraries thereof from a resin is described. Reaction of resin-bound amino acids with isocyanates yields resin-bound ureas, which further react with chlorocarbonyl isocyanate to selectively afford the resin-bound 1,3-disubstituted-1,3,5-triazine-2,4,6-triones. Selective alkylation at the N-5 position of the resin-bound 1,3-disubstituted-1,3,5-triazine-2,4,6-triones produces a trisubstituted triazinetrione. The products are cleaved from their solid support and obtained in good yield and purity.
    Type: Grant
    Filed: February 8, 2002
    Date of Patent: March 1, 2005
    Assignee: Torrey Pines Institute for Molecular Studies
    Inventors: Yongping Yu, John M. Ostresh, Richard A. Houghten
  • Patent number: 6809202
    Abstract: The synthesis of individual di- and tri-substituted-1,4-diazacyclic compounds having 6- to 8-atoms in the cyclic ring, their corresponding 1,6-diketo-2,5-diazacyclic compounds and similar 1,4-diazacyclic ring compounds having one ring carbonyl gorup and 6-8 atoms in the ring is disclosed, as are libraries of such compounds. Methods of preparing and using the libraries of compounds as well as individual compounds of the libraries are also disclosed.
    Type: Grant
    Filed: June 6, 2002
    Date of Patent: October 26, 2004
    Assignee: Torrey Pines Institute for Molecular Studies
    Inventors: Adel Nefzi, John M. Ostresh, Richard A. Houghten
  • Patent number: 6750030
    Abstract: A method of detecting cardiac ischemia by detecting elevated levels of serum free fatty acids in serum unbound to serum albumin (FFAU) compared to an average FFAU level in individuals without cardiac ischemia, wherein the detection method uses a free fatty acid binding protein derivatized with a fluorescent moiety, is disclosed.
    Type: Grant
    Filed: April 22, 2002
    Date of Patent: June 15, 2004
    Assignee: Torrey Pines Institute for Molecular Studies
    Inventor: Alan M. Kleinfeld
  • Patent number: 6664282
    Abstract: Individual substituted [3,5,7]-1H-imidazo[1,5-a]imidazol-2(3H)-one compounds and their pharmaceutically-acceptable salts are disclosed, as are libraries of such compounds. Methods of preparing and using the libraries of compounds as well as individual compounds of the libraries are also disclosed.
    Type: Grant
    Filed: May 8, 2002
    Date of Patent: December 16, 2003
    Assignee: Torrey Pines Institute for Molecular Studies
    Inventors: Hassan M. ElAbdellaoui, John M. Ostresh, Richard A. Houghten
  • Patent number: 6545032
    Abstract: Individual substituted [3,5,7]-1H-imidazo[1,5-a]imidazol-2(3H)-one compounds and their pharmaceutically-acceptable salts are disclosed, as are libraries of such compounds. Methods of preparing and using the libraries of compounds as well as individual compounds of the libraries are also disclosed.
    Type: Grant
    Filed: September 12, 2000
    Date of Patent: April 8, 2003
    Assignee: Torrey Pines Institute for Molecular Studies
    Inventors: Hassan M. ElAbdellaoui, John M. Ostresh, Richard A. Houghten
  • Patent number: 6441172
    Abstract: The synthesis of individual di- and tri-substituted-1,4-diazacyclic compounds having 6- to 8-atoms in the cyclic ring, their corresponding 1,6-diketo-2,5-diazacyclic compounds and similar 1,4-diazacyclic ring compounds having one ring carbonyl group and 6-8 atoms in the ring is disclosed, as are libraries of such compounds. Methods of preparing and using the libraries of compounds as well as individual compounds of the libraries are also disclosed.
    Type: Grant
    Filed: May 12, 1999
    Date of Patent: August 27, 2002
    Assignee: Torrey Pines Institute for Molecular Studies
    Inventors: Adel Nefzi, John M. Ostresh, Richard A. Houghten
  • Patent number: 6287787
    Abstract: Dimeric oligopeptide mixture sets, their synthesis and use in determining the sequence of an oligopeptide dimer ligand that optimally binds to a receptor are disclosed. A dimeric oligopeptide mixture set has two oligopeptide portions bonded together by a disulfide bond. Each oligopeptide of a first oligopeptide portion has the same number of 3 to about 10 residues including an oxidized mercaptan-containing residue that forms part of the disulfide bond and an amino acid residue sequence that includes at least one of at least six residues in addition to the oxidized mercaptan-containing residue at the same one or more predetermined positions of the oligopeptide chain. The second portion has an oligopeptide chain having a length of 4 to about 10 residues, including an oxidized mercaptan-containing residue that forms part of the disulfide bond.
    Type: Grant
    Filed: November 24, 1993
    Date of Patent: September 11, 2001
    Assignee: Torrey Pines Institute for Molecular Studies
    Inventors: Richard A. Houghten, Clemencia Pinilla
  • Patent number: 6210672
    Abstract: Disclosed is a method for enhancing an immune response against an antigen by topical administration of an antigen or a portion thereof in conjunction with an enhancer of skin penetration and an inducer of Langerhans cell migration.
    Type: Grant
    Filed: October 20, 1998
    Date of Patent: April 3, 2001
    Assignee: Torrey Pines Institute for Molecular Studies
    Inventor: Carol Cowing
  • Patent number: 6197529
    Abstract: Linear substituted oligoalkyleneimine molecules and libraries of molecules are disclosed, as are their methods of synthesis and use in acceptor binding assays. Each molecule or chain of a library contains the same number of 2 to about 10 substituted alkyleneimine repeating units, whose substituents are reduced amino acid side chains bonded to the repeating units at a position alpha to the nitrogen atom, and the member chains of a library are present in equimolar amounts. The chains of a library contain one or more predetermined reduced amino acid side chain-substituted repeating units at one or more predetermined positions of the substituted oligoalkyleneimine chain. The library contains equimolar amounts of at least six different reduced amino acid side chain-substituted repeating units at one or more of the same predetermined positions of the substituted oligoalkyleneimine chain. Particularly preferred linear substituted oligoalkyleneimine molecules and libraries are linear substituted oligoethyleneimines.
    Type: Grant
    Filed: May 18, 1993
    Date of Patent: March 6, 2001
    Assignee: Torrey Pines Institute for Molecular Studies
    Inventors: Richard A. Houghten, Julio Hernan Cuervo, Fred F. Weitl
  • Patent number: 5919897
    Abstract: The present invention provides novel opioid peptides. Disclosed are opioid peptides having the general structures Ac-Phe-Arg-Trp-Trp-Tyr-Xaa-NH.sub.2 (SEQ ID NO. 1); Ac-Arg-Trp-Ile-Gly-Trp-Xaa-NH.sub.2 (SEQ ID NO. 2); Trp-Trp-Pro-Lys-His-Xaa-NH.sub.2 (SEQ ID NO. 3); and shorter versions of the latter, namely, Trp-Trp-Pro-Xaa-NH.sub.2 (SEQ ID NO. 4); Tyr-Pro-Phe-Gly-Phe-Xaa-NH.sub.2 (SEQ ID NO. 5); (D)Ile-(D)Met-(D)Ser-(D)Trp-(D)Trp-Gly.sub.n -Xaa-NH.sub.2 (SEQ ID NO. 6); and (D)Ile-(D)Met-(D)Thr-(D)Trp-Gly-Xaa-NH.sub.2 (SEQ ID NO. 7). Within each genus, Xaa is substituted by a specific amino acid. The invention also relates to an opioid peptide having the general structure Tyr-A1-B2-C3-NH.sub.2 (SEQ ID NO. 214), wherein A is D-Nve or D-Nle, B is Gly, Phe, or Trp, and C is Trp or Nap. Also included within the invention are opioid peptides of the general structure Me.sub.x H.sub.y N-Tyr-Tyr-Phe.sub.m -Pro.sub.n -NH.sub.2 (SEQ ID NO.
    Type: Grant
    Filed: June 7, 1995
    Date of Patent: July 6, 1999
    Assignee: Torrey Pines Institute for Molecular Studies
    Inventors: Colette T. Dooley, Richard A. Houghten
  • Patent number: 5840697
    Abstract: The present invention relates to novel family of peptides which inhibit calmodulin and which have the general structure Ac-A1-B2-C3-D4-E5-F6-NH.sub.2, (SEQ ID No. 1), wherein A1 is (D)Leu or Leu, B2 is (D)Gln, Gln, (D)Trp, or Trp, C3 is (D)Arg, Arg, (D)Ile, or Ile, D4 is (D)Ile, Ile, (D)His, or His, E5 is (D)Leu, Leu, (D)His, or His, and F6 is (D)Trp, Trp, (D)Arg, or Arg. The novel peptides can be used to inhibit the activity of calmodulin. In addition, the present invention relates to pharmaceutical compositions comprising a pharmaceutically acceptable carrier and a calmodulin-inhibitor peptide. These compositions can be used to treat calmodulin related disorders.
    Type: Grant
    Filed: June 6, 1996
    Date of Patent: November 24, 1998
    Assignee: Torrey Pines Institute for Molecular Studies
    Inventors: Sylvie E. Blondelle, Richard A. Houghten, Enrique Perez-Paya
  • Patent number: 5814470
    Abstract: Sets and libraries of sets of polypeptides that are related in sequence to melittin are disclosed that have antimicrobial, hemolytic and hydrolytically catalytic activities, as are processes for making and using the same. A contemplated set is a mixture of equimolar amounts of a polypeptide of SEQ ID NO:2, and more preferably SEQ ID NO:3.
    Type: Grant
    Filed: July 7, 1997
    Date of Patent: September 29, 1998
    Assignee: Torrey Pines Institute for Molecular Studies
    Inventors: Sylvie Blondelle, Richard A. Houghten, Enrique Perez-Paya
  • Patent number: 5763193
    Abstract: Linear C.sub.1 -C.sub.7 -alkyl peralkylated oligopeptide sets of molecules are disclosed, as are their methods of synthesis and use in acceptor binding assays. Each molecule or chain of a set contains the same number of two to about ten substituted C.sub.1 -C.sub.7 -alkyl peralkylated amino acid residues, and the member chains of a set are present in equimolar amounts. The chains of a set contain one or more predetermined peralkylated amino acid residues at one or more predetermined positions of the peralkylated oligopeptide chain. The set contains equimolar amounts of at least six different peralkylated amino acid residues at one or more of the same predetermined positions of the peralkylated oligopeptide chain. Libraries of such sets, processes for their use and solid support-linked peralkylated sets are also contemplated, as are specific permethylated oligopeptides.
    Type: Grant
    Filed: December 22, 1995
    Date of Patent: June 9, 1998
    Assignee: Torrey Pines Institute for Molecular Studies
    Inventors: Richard A. Houghten, John M. Ostresh, Sylvie Blondelle
  • Patent number: 5698673
    Abstract: Disclosed are peptides having anti-mellitin activity and having the formulae AC-IVILZZ-NH.sub.2, wherein Z is an amino acid. Also disclosed are compositions containing these peptides and methods of using them.
    Type: Grant
    Filed: May 4, 1995
    Date of Patent: December 16, 1997
    Assignee: Torrey Pines Institute
    Inventors: Sylvie E. Blondelle, Clemencia Pinilla, Richard A. Houghten
  • Patent number: 5645996
    Abstract: Sets and libraries of sets of polypeptides that are related in sequence to melittin are disclosed that have antimicrobial, hemolytic and hydrolyrically catalytic activities, as are processes for making and using the same. A contemplated set is a mixture of equimolar amounts of a polypeptide of SEQ ID NO:2, and more preferably SEQ ID NO:3.
    Type: Grant
    Filed: August 24, 1994
    Date of Patent: July 8, 1997
    Assignee: Torrey Pines Institute for Molecular Studies
    Inventors: Sylvie Blondelle, Richard A. Houghten, Enrique Perez-Paya
  • Patent number: 5641861
    Abstract: The present invention provides novel opioid peptides. Disclosed are opioid peptides having the general structures Ac-Phe-Arg-Trp-Trp-Tyr-Xaa--NH.sub.2 (SEQ ID NO. 1); Ac-Arg-Trp-Ile-Gly-Trp-Xaa--NH.sub.2 (SEQ ID NO. 2); Trp-Trp-Pro-Lys-His-Xaa--NH.sub.2 (SEQ ID NO. 3); and shorter versions of the latter, namely, Trp-Trp-Pro-Xaa--NH.sub.2 (SEQ ID NO. 4); Tyr-Pro-Phe-Gly-Phe-Xaa--NH.sub.2 (SEQ ID NO. 5); (D)Ile-(D)Met-(D)Ser-(D)Trp-(D)Trp-Gly.sub.n -Xaa--NH.sub.2 (SEQ ID NO. 6); and (D)Ile-(D)Met-(D)Thr-(D)Trp-Gly-Xaa--NH.sub.2 (SEQ ID NO. 7). Within each genus, Xaa is substituted by a specific amino acid. The invention also relates to an opioid peptide having the general structure Tyr-A1-B2-C3--NH.sub.2 (SEQ ID NO. 214), wherein A is D-Nve or D-Nle, B is Gly, Phe, or Trp, and C is Trp or Nap. Also included within the invention are opioid peptides of the general structure Pm and red {Me.sub.x H.sub.y N-Tyr-(NMe).sub.z -Tyr-Xaa.sub.z --NH.sub.2 } (SEQ ID NO.
    Type: Grant
    Filed: June 7, 1995
    Date of Patent: June 24, 1997
    Assignee: Torrey Pines Institute For Molecular Studies
    Inventors: Colette T. Dooley, Richard A. Houghten