Patents Examined by A. Achutamurthy
  • Patent number: 7186523
    Abstract: A method for the production of aryl-carotenoids is provided through bioconversion of cyclic carotenoids having at least one ?-ionone ring. Expression of a heterologous gene encoding a carotene desaturase (crtU) enzyme in a host cell that produces a suitable cyclic carotenoid substrate effect the production of aryl carotenoids.
    Type: Grant
    Filed: May 5, 2003
    Date of Patent: March 6, 2007
    Assignee: E. I. du Pont de Nemours and Company
    Inventors: Qiong Cheng, Luan Tao, Pierre E. Rouvier
  • Patent number: 7186802
    Abstract: This invention relates to new members of the human Claudin polypeptide family, to methods of making such polypeptides, and to methods of using them to treat Claudin-associated conditions and to identify compounds that alter Claudin polypeptide activities.
    Type: Grant
    Filed: August 15, 2001
    Date of Patent: March 6, 2007
    Assignee: Immunex Corporation
    Inventors: Adel Youakim, Robert F. DuBose, Steven R. Wiley
  • Patent number: 7186532
    Abstract: The present invention relates to: a process for producing D-serine wherein a microbial cell which is modified to have a higher L-serine deaminase activity than Escherichia coli DH5? strain, a culture of said cell, or a processed product thereof is brought into contact with DL-serine in a DL-serine-containing medium to decompose L-serine, and the remaining D-serine is recovered from the medium; and a microorganism used for this production process. D-serine is a useful compound as a synthetic intermediate for useful medicaments such as D-cycloserine.
    Type: Grant
    Filed: October 29, 2001
    Date of Patent: March 6, 2007
    Assignee: Kyowa Hakko Kogyo Co., Ltd.
    Inventors: Hajime Ikeda, Yoshiyuki Yonetani, Shin-ichi Hashimoto
  • Patent number: 7186534
    Abstract: The cDNA sequence of the human 9-cis-retinol dehydrogenase enzyme is disclosed.
    Type: Grant
    Filed: March 29, 2000
    Date of Patent: March 6, 2007
    Assignee: The Trustees of Columbia University in the City of New York
    Inventors: William S. Blaner, Roseann Piantedosi Zott, Mary V. Gamble, James R. Mertz
  • Patent number: 7179895
    Abstract: Novel sequences for calcium channel ?2?-2 and ?2?-3 subunits are provided. Also provided are cell lines that express the novel calcium channel subunits of the invention. These cells may be used for identifying compounds capable of stimulating or inhibiting the activation of the calcium channels.
    Type: Grant
    Filed: August 23, 2004
    Date of Patent: February 20, 2007
    Assignee: Neuromed Pharmaceuticals Ltd.
    Inventors: David Parker, Xianghong Xu, Afsheen Khawaja, Terrance P. Snutch
  • Patent number: 7176277
    Abstract: Compounds that modulate the function of anti-apoptotic proteins such as Bcl-2 and Bcl-XL are identified. These compounds have the ability to convert the activity of Bcl-2-family member proteins from anti-apoptotic to pro-apoptotic. Methods for inducing apoptosis are described, together with methods for identifying molecules that induce apoptosis through interaction with Bcl-2-family members.
    Type: Grant
    Filed: October 7, 2005
    Date of Patent: February 13, 2007
    Assignee: The Burnham Institute
    Inventors: John C. Reed, Xiao-kun Zhang, Bin Guo, Bingzhen Lin, Siva Kumar Kolluri
  • Patent number: 7176009
    Abstract: This invention relates to an isolated nucleic acid fragment encoding a sucrose phosphate synthase. The invention also relates to the construction of a chimeric gene encoding all or a portion of the sucrose phosphate synthase, in sense or antisense orientation, wherein expression of the chimeric gene results in production of altered levels of the sucrose phosphate synthase in a transformed host cell.
    Type: Grant
    Filed: August 14, 2003
    Date of Patent: February 13, 2007
    Assignee: E.I. du Pont de Nemours and Company
    Inventors: Stephen M. Allen, Perry G. Caimi, Emil M. Orozco, Jr., Mitchell C. Tarczynski
  • Patent number: 7153663
    Abstract: The invention relates to the isolation, sequencing, and recombinant expression of genes encoding either a nitrile hydratase (NHase) or amidase (Am) from Comamonas testosteroni 5-MGAM-4D, where the NHase is useful for catalyzing the hydration of nitriles to the corresponding amides, and the amidase is useful for hydrolysis of amides to the corresponding carboxylic acids. Also provided are transformed host cells containing polynucleotides for expressing the nitrile hydratase or amidase enzymes from Comamonas testosteroni 5-MGAM-4D.
    Type: Grant
    Filed: October 29, 2004
    Date of Patent: December 26, 2006
    Assignee: E. I. du Pont de Nemours and Company
    Inventors: Mark S. Payne, Robert DiCosimo, John E. Gavagan, Robert D. Fallon
  • Patent number: 7144985
    Abstract: The invention relates to methods of determining islet cell activity by detecting the level of Archipelin or a fragment thereof and comparing the level to a baseline level or range associated with a known islet cell activity. Such methods are useful in diagnosing and studying the development of diabetes.
    Type: Grant
    Filed: December 2, 2002
    Date of Patent: December 5, 2006
    Assignee: Metabolex, Inc.
    Inventors: Jeffrey D. Johnson, John E. Blume, John F. Palma, Yun-Ping Zhou
  • Patent number: 7141401
    Abstract: Protein complexes are provided comprising COX1 and one or more proteins selected from the group consisting of THR S14 and Opa1. The protein complexes are useful in screening assays for identifying compounds effective in modulating the protein complexes and in treating and/or preventing diseases and disorders associated with COX1 and its interacting partner proteins. In addition, methods of detecting the protein complexes and modulating the functions and activities of the protein complexes or interacting members thereof are also provided.
    Type: Grant
    Filed: March 18, 2002
    Date of Patent: November 28, 2006
    Assignee: Myriad Genetics, Inc.
    Inventor: Daniel Albert Wettstein
  • Patent number: 7118904
    Abstract: The present invention is directed to nucleotide sequences coding for a bacterial enolase enzyme. These sequences may be used in improved methods for the fermentative preparation of amino acids using coryneform bacteria.
    Type: Grant
    Filed: December 8, 2003
    Date of Patent: October 10, 2006
    Assignee: Degussa AG
    Inventors: Bettina Möckel, Walter Pfefferle, Thomas Hermann, Alfred Pühler, Jörn Kalinowski, Brigitte Bathe
  • Patent number: 7115403
    Abstract: This invention relates to the expression of improved polynucleotide and polypeptide sequences encoding for eukaryotic enzymes, particularly oxidase enzymes. The enzymes are advantageously produced in conventional or facile expression systems. Various methods for directed evolution of polynucleotide sequences can be used to obtain the improved sequences. The improved characteristics of the polypeptides or proteins generated in this manner include improved expression, enhanced activity toward one or more substrates, and increased thermal stability. In a particular embodiment, the invention relates to improved expression of the galactose oxidase gene and galactose oxidase enzymes. GAO mutants that are highly active and/or thermostable are disclosed.
    Type: Grant
    Filed: May 16, 2000
    Date of Patent: October 3, 2006
    Assignee: The California Institute of Technology
    Inventors: Frances H. Arnold, Ioanna P. Petrounia, Lianhong Sun
  • Patent number: 7115735
    Abstract: The object of the present invention is to provide a novel dehydrogenase having a property which is different from that of known dehydrogenases. The present invention provides a dehydrogenase having the following physicochemical properties: (1) effect: to produce N-alkyl-L-alanine from pyruvic acid and alkylamine or dialkylamine using NADPH and/or NADH as coenzyme; (2) substrate specificity: to show activity to alkylamine or dialkylamine but not to ammonium; (3) optimal pH when using phenylpyruvic acid and methylamine as substrates is around 10; and (4) when treated at 30 ° C. for 30 minutes, the enzyme is stable at around pH 5 to 10.5.
    Type: Grant
    Filed: August 27, 2004
    Date of Patent: October 3, 2006
    Assignee: Mitsubishi Chemical Corporation
    Inventors: Nobuyoshi Esaki, Hisaaki Mihara, Mari Hara, Makoto Ueda
  • Patent number: 7109009
    Abstract: Novel genes have been isolated which encode cytochrome P450 and NADPH reductase enzymes of the ?-hydroxylase complex of C. tropicalis 20336. Vectors including these genes, transfected host cells and transformed host cells are provided. Methods of producing of cytochrome P450 and NADPH reductase enzymes are also provided which involve transforming a host cell with a gene encoding these enzymes and culturing the cells. Methods of increasing the production of a dicarboxylic acid and methods of increasing production of the aforementioned enzymes are also provided which involve increasing in the host cell the number of genes encoding these enzymes. A method for discriminating members of a gene family by quantifying the expression of genes is also provided.
    Type: Grant
    Filed: April 2, 2003
    Date of Patent: September 19, 2006
    Assignee: Cognis Corporation
    Inventors: C. Ron Wilson, David L. Craft, L. Dudley Eirich, Mark Eshoo, Krishna M. Madduri, Cathy A. Cornett, Alfred A. Brenner, Maria Tang, John C. Loper, Martin Gleeson
  • Patent number: 7109008
    Abstract: The present invention provides a novel L-glutamate oxidase, a gene encoding the enzyme, and a method for producing the enzyme. By use of a gene encoding the enzyme, L-glutamate oxidase can be readily prepared at low costs through a recombinant DNA technique. The novel L-glutamate oxidase has the following physicochemical properties: (A) action: catalyzing the following reaction: L-glutamic acid+O2+H2O??-ketoglutaric acid+H2O2+NH3; (B) substrate specificity: being specific to L-glutamic acid; (C) molecular weight and subunit structure: molecular weight as determined through SDS-polyacrylamide gel electrophoresis of 70,000±6,000, molecular weight as determined through gel filtration of 140,000±10,000, and being a dimer formed of the same subunits having a molecular weight of 70,000±6,000; (D) optimum pH: around pH 6.0 to 8.5; (E) heat stability: being stable up to 60° C. at a pH of 7.4 for 30 minutes; and (F) coenzyme: flavin adenine dinucleotide (FAD).
    Type: Grant
    Filed: April 19, 2001
    Date of Patent: September 19, 2006
    Assignee: Yamasa Corporation
    Inventors: Kenji Inagaki, Jiro Arima, Makoto Ashiuchi, Toshiharu Yagi, Hitoshi Kusakabe
  • Patent number: 7105296
    Abstract: Genes have been isolated from a variety of bacteria encoding Baeyer-Villiger monooxygenase activity. The genes and their products are useful for the conversion of ketones to the corresponding esters. A series of motifs, common to all genes, has been identified as diagnostic for genes encoding proteins of this activity.
    Type: Grant
    Filed: August 28, 2002
    Date of Patent: September 12, 2006
    Assignee: E. I. du Pont de Nemours and Company
    Inventors: Michael G. Bramucci, Patricia C. Brzostowicz, Kristy N Kostichka, Vasantha Nagarajan, Pierre E. Rouviere, Stuart M. Thomas
  • Patent number: 7101696
    Abstract: A novel polyhydroxyalkanoate (PHA) synthase derived from a microorganism capable of producing a PHA having a novel side-chain structure and a DNA encoding the amino acid sequence for the synthase are provided. Two PHA synthase proteins (SEQ ID NOs: 1 and 3) derived from Pseudomonas cichorii H45 (FERM BP-7374) and PHA synthase genes encoding these PHA synthases are provided, respectively (SEQ ID NOs: 2 and 4). A recombinant microorganism is endowed with a PHA producing ability.
    Type: Grant
    Filed: August 10, 2004
    Date of Patent: September 5, 2006
    Assignee: Canon Kabushiki Kaisha
    Inventors: Tetsuya Yano, Takeshi Imamura, Sakae Suda, Tsutomu Honma
  • Patent number: 7098010
    Abstract: This invention relates to the expression of improved polynucleotide and polypeptide sequences encoding for eukaryotic enzymes, particularly oxidase enzymes. The enzymes are advantagoeusly produced in conventional or facile expression systems. Various methods for directed evolution of polynucleotide sequences can be used to obtain the improved sequences. The improved characteristics of the polypeptides or proteins generated in this manner include improved expression, enhanced activity toward one or more substrates, and increased thermal stability. In a particular embodiment, the invention relates to improved expression of the galactose oxidase gene and galactose oxidase enzymes. GAO mutants that are highly active and/or thermostable are disclosed.
    Type: Grant
    Filed: November 27, 2000
    Date of Patent: August 29, 2006
    Assignee: California Institute of Technology
    Inventors: Frances H. Arnold, Ioanna P. Petrounia, Lianhong Sun
  • Patent number: 7098015
    Abstract: The invention provides isolated nucleic acids molecules, designated 27875, 22025, 27420, 16319, 55092 and 10218 nucleic acid molecules. The invention also provides antisense nucleic acid molecules, recombinant expression vectors containing 27875, 22025, 27420, 16319, 55092 and 10218 nucleic acid molecules, host cells into which the expression vectors have been introduced, and nonhuman transgenic animals in which a 27875, 22025, 27420, 16319, 55092 and 10218 gene has been introduced or disrupted. The invention still further provides isolated 27875, 22025, 27420, 17906, 16319, 55092 or 10218 proteins, fusion proteins, antigenic peptides and anti-27875, 22025, 27420, 17906, 16319, 55092 or 10218 antibodies. Diagnostic and therapeutic methods utilizing compositions of the invention are also provided.
    Type: Grant
    Filed: March 11, 2003
    Date of Patent: August 29, 2006
    Assignee: Millennium Pharmaceuticals, Inc.
    Inventors: Kyle J. MacBeth, Joseph M. Carroll, William James Cook, Rachel E. Meyers, Miyoung Chun, Mark J. Williamson
  • Patent number: 7083960
    Abstract: The present invention provides soluble cytochrome p450 reductase (CPR) proteins from Candida sp. having an altered N-terminal region which results in reduced hydrophobicity of the N-terminal region. Also provided are host cells comprising the subject soluble CPR proteins. In addition, the present invention provides nucleotide and corresponding amino acid sequences for soluble CPR proteins and vectors comprising the nucleotide sequences. Methods for producing a soluble CPR, for increasing production of a dicarboxylic acid, and for detecting a cytochrome P450 are also provided.
    Type: Grant
    Filed: October 15, 2002
    Date of Patent: August 1, 2006
    Assignee: Cognis Corporation
    Inventor: Mark Donnelly