Patents Examined by David Lambertson
  • Patent number: 7229784
    Abstract: Methods for improving the production of a secondary metabolite by a fungus by increasing the yield or productivity of the secondary metabolite produced by the fungus are described. The methods include increasing the expression of LYS14, for example, by transforming a cell with a nucleic acid molecule encoding LYS14.
    Type: Grant
    Filed: September 19, 2001
    Date of Patent: June 12, 2007
    Assignee: Microbia, Inc.
    Inventors: Douglas Holtzman, Kevin T. Madden, Mary Maxon, Amir Sherman
  • Patent number: 7223575
    Abstract: Disclosed in the present invention is a Zymomonas integrant and derivatives of these integrants that posses the ability to ferment pentose into ethanol. The genetic sequences encoding for the pentose-fermenting enzymes are integrated into the Zymomonas in a two-integration event of homologous recombination and transposition. Each operon includes more than one pentose-reducing enzyme encoding sequence. The integrant in some embodiments includes enzyme sequences encoding xylose isomerase, xylulokinase, transketolase and transketolase. The Zymomonas integrants are highly stable, and retain activity for producing the pentose-fermenting enzyme for between 80 to 160 generations. The integrants are also resistant to acetate inhibition, as the integrants demonstrate efficient ethanol production even in the presence of 8 up to 16 grams acetate per liter media.
    Type: Grant
    Filed: April 27, 2002
    Date of Patent: May 29, 2007
    Assignee: Midwest Research Institute
    Inventors: Min Zhang, Yat-Chen Chou, William Howe, Christine Eddy, Kent Evans, Ali Mohagheghi
  • Patent number: 7067649
    Abstract: An isolated polynucleotide functional as a promoter in eukaryotic cells is disclosed. The isolated polynucleotide includes an endothelial specific enhancer element as detailed herein. Further disclosed is a method of expressing a nucleic acid sequence of interest in endothelial cells.
    Type: Grant
    Filed: May 1, 2002
    Date of Patent: June 27, 2006
    Assignee: Vascular Biogenics Ltd.
    Inventor: Dror Harats
  • Patent number: 7060461
    Abstract: Methods for enhancing expression levels and secretion of heterologous fusion proteins in a host cell are disclosed.
    Type: Grant
    Filed: January 7, 2003
    Date of Patent: June 13, 2006
    Assignee: Lifesensors, Inc.
    Inventors: Tauseef R. Butt, Steven D. Weeks, Hiep T. Tran, Michael P. Malakhov, Oxana A. Malakhova
  • Patent number: 7045611
    Abstract: The invention relates to a nucleic acid molecule, comprising a nucleic acid which codes for a polypeptide with chorismate mutase activity and derivatives thereof, whereby the derivatives have at least 10% of the chorismate mutase activity of the chorismate mutase, according to the identification number of the SEQ ID NO:2. The invention further relates to vectors containing nucleic acid molecules, to host cells comprising nucleic acid molecules and their use in methods for producing polypetides with chorismate mutase activity. The invention also relates to the polypeptides with chorismate mutase activity and antibodies which specifically recognize the same. In addition, the invention relates to methods for producing auxotrophic yeast strains using the nucleic acid molecules and to the preparation of the yeast strains.
    Type: Grant
    Filed: October 25, 2001
    Date of Patent: May 16, 2006
    Assignee: Rhein Biotech Gesellschaft für neue Biotechnologische Prozesse und Produkte mbH
    Inventors: Gerd Gellissen, Gerhard Braus, Ralph Pries, Sven Krappmann, Alexander W. Strasser
  • Patent number: 7026460
    Abstract: The invention provides variant regulator proteins of secondary metabolite production and nucleic acids encoding said variant regulator proteins. In particular, the invention provides variant regulator molecules of the lovE protein.
    Type: Grant
    Filed: October 9, 2001
    Date of Patent: April 11, 2006
    Assignee: Microbia, Inc.
    Inventors: Shannon Roberts, Amir Sherman, Joshua Trueheart, G. Todd Milne
  • Patent number: 6933378
    Abstract: A primary object of this invention is to provide a method which will enable to coexpress simultaneously two (or more) desired genes in plant, animal or yeast cells, in transgenic plants and animals, or in vitro, in plant cell-derived or animal cell-derived translation systems. This objection is to be accomplished by utilizing sequence elements derived from RNAs of a tobamovirus upstream of MP gene or CP gene termed here as IRESMP and IRESCP , respectively. The method of this invention involves the construction of a recombinant nucleic acid sequence which comprises a specific transcriptional promoter, a first gene expressible in eukaryotic cells linked to said transcriptional promoter, IRESMP or IRESCP located 3? to the first gene and a second gene expressible in eukaryotic cells, located 3? to IRES sequence such that the second gene is placed under the transcriptional control of IRES sequence originated from tobamovirus genome.
    Type: Grant
    Filed: July 25, 2001
    Date of Patent: August 23, 2005
    Inventors: Joseph Atabekov, Timo Korpela, Yurii Dorokhov, Peter Ivanov, Maxim Skulachev, Nina Rodionova, Olga Karpova
  • Patent number: 6911324
    Abstract: The present invention provides methods for inducing insulin gene expression in cultured pancreas cells, the method comprising contacting a culture of endocrine pancreas cells expressing a PDX-1 gene and a NeuroD/BETA2 gene with a GLP-1 receptor agonist, wherein the cells have been cultured under conditions such that the cells are in contact with other cells in the culture, thereby inducing insulin gene expression in the cells. The invention also provides high throughput screening methods for modulators of ?-cell function, stable cultures of cells made by the methods of the invention, and methods of treating a human subject using the methods of the invention.
    Type: Grant
    Filed: October 18, 2001
    Date of Patent: June 28, 2005
    Assignee: The Regents of the University of California
    Inventors: Fred Levine, Dominique Gouty, Pamela Itkin-Ansari
  • Patent number: 6890730
    Abstract: The invention provides a novel protein that, when expressed in a host cell, increases cellular biomass and cellular protein production and secretion. The invention also provides a polynucleotide encoding the novel protein, and methods for using the polynucleotide and encoded protein to increase cellular biomass and cellular protein production and secretion. Also provided is a genetically altered mutant cell strain with enhanced production and secretion of cellular and heterologous proteins.
    Type: Grant
    Filed: December 10, 1999
    Date of Patent: May 10, 2005
    Assignee: The Salk Institute
    Inventors: Martin Latterich, Kendall Powell
  • Patent number: 6884585
    Abstract: The present invention provides methods for inducing insulin gene expression in cultured pancreas cells, the method comprising contacting a culture of endocrine pancreas cells expressing a PDX-1 gene with a GLP-1 receptor agonist, wherein the cells have been cultured under conditions such that the cells are in contact with other cells in the culture, thereby inducing insulin gene expression in the cells. The invention also provides high throughput screening methods for modulators of ?-cell function, stable cultures of cells made by the methods of the invention, and methods of treating a human subject using the methods of the invention.
    Type: Grant
    Filed: May 30, 2002
    Date of Patent: April 26, 2005
    Assignee: The Regents of the University of California
    Inventors: Fred Levine, Dominique Dufayet
  • Patent number: 6852531
    Abstract: An in-vitro system in which mammalian messenger RNA decapping occurs is provided, for use in identifying modulators, deficiencies, and other aspects of the regulation of RNA turnover.
    Type: Grant
    Filed: September 18, 2001
    Date of Patent: February 8, 2005
    Assignee: University of Medicine & Dentistry of NJ
    Inventors: Jeffrey Wilusz, Carol Wilusz, Min Gao
  • Patent number: 6841352
    Abstract: The present invention provides a mating-based yeast two-hybrid system for determining whether a test polypeptide interacts with another test polypeptide in the presence or absence of one or more test compounds. The system is useful in detecting protein-protein interactions and in identifying compounds capable of modulating protein-protein interactions.
    Type: Grant
    Filed: June 28, 2002
    Date of Patent: January 11, 2005
    Assignee: Myriad Genetics, Inc.
    Inventor: Kirill Ostanin
  • Patent number: 6835538
    Abstract: The present invention concerns a method of genetic modification of a TGB-3 wild type viral sequence for reducing or suppressing the possible deleterious effects of the agronomic properties of a transformed plant or plant cell by the TGB-3 viral sequence, comprising the following successive steps: submitting the sequence to point mutation(s) which allow the substitution of at least one amino-acid into a different amino-acid, selecting genetically modified TGB-3 wild type viral sequences having the point mutation(s) and which are not able to promote cell-to-cell movement of a mutant virus having a dysfunctional TGB-3 wild type viral sequence, when expressed in trans from a replicon, further selecting among the genetically modified TGB-3 viral sequences, the specifically genetically modified sequence which inhibits infection with a co-inoculated wild type virus when the mutant form was expressed from a replicon, and recovering the specifically genetically modified TGB-3 viral sequence.
    Type: Grant
    Filed: April 24, 2001
    Date of Patent: December 28, 2004
    Assignee: SES Europe N.V./S.A
    Inventors: Emmanuelle Lauber, Hubert Guilley, Ken Richards, Gérard Jonard
  • Patent number: 6828102
    Abstract: A method is disclosed herein for monitoring the efficiency of an endonuclease digestion using a plasmid specifically designed for that purpose. The plasmid of the present invention comprises at least two polylinker regions containing a plurality of unique restriction sites distributed so that digestion of the plasmid with any two restriction endonucleases whose sites are represented on the plasmid results in two fragments that are sufficiently different in size from the intact plasmid so as to be readily distinguishable therefrom. To ensure this size differential, the polylinker regions of the plasmid are separated by a spacer segment comprising a restriction site-free nucleic acid sequence that is at least about 15% of the length of the intact plasmid.
    Type: Grant
    Filed: November 20, 2001
    Date of Patent: December 7, 2004
    Assignee: Albany Medical College
    Inventor: Charles V. Lowry
  • Patent number: 6808896
    Abstract: The present invention solves the problem of integrating multiple copies of a gene of interest by homologous recombination into well defined positions adjacent to conditionally essential genes in a bacterial host strain chromosome, which already comprises at least one copy of the gene of interest in a different position.
    Type: Grant
    Filed: August 13, 2001
    Date of Patent: October 26, 2004
    Assignee: Novozymes A/S
    Inventors: Steen Troels Jørgensen, Jens Toenne Andersen, Michael Dolbjerg Rasmussen, Carsten Olsen
  • Patent number: 6803191
    Abstract: A Candida albicans gene, CaNik1, is involved in phenotypic switching which is significant because of a direct correlation between the switching and the level of virulence of the organism. A method of screening for anti-fungal pharmaceutical candidates entails bringing a test substance into contact with cells containing a CaNik1 gene or a variant thereof and then monitoring the effect, if any, on the level of expression of the gene.
    Type: Grant
    Filed: January 20, 2000
    Date of Patent: October 12, 2004
    Assignee: University of Iowa Research Foundation
    Inventors: Thyagarajan Srikantha, David R. Soll
  • Patent number: 6803193
    Abstract: An assay for the detection of substances agonistic or antagonistic to the mevalonate pathway are disclosed.
    Type: Grant
    Filed: June 22, 2000
    Date of Patent: October 12, 2004
    Assignee: The Penn State Research Foundation
    Inventors: Anita K. Hopper, Nancy C. Martin, Ann Benko, Gabriela Vaduva
  • Patent number: 6790615
    Abstract: Method and compositions for regulating cell cycle progression are disclosed. Compositions include nucleic acids comprising a human Cdc5 gene, antisense gene and fragments thereof and a human Cdc5 protein and polypeptide fragments thereof polypeptide. The consensus DNA binding site for hCdc5 has been described.
    Type: Grant
    Filed: January 8, 2001
    Date of Patent: September 14, 2004
    Assignee: Regents of the University of California
    Inventor: Harold S. Bernstein
  • Patent number: 6790607
    Abstract: A method for detecting interactions between first and second interacting molecules at variable sensitivity. This variable sensitivity may be obtained by providing for the overexpression of either a bait hybrid protein containing a DNA binding domain (desensitization) or a prey hybrid protein containing the DNA activation domain for a reporter gene (enhanced sensitivity). The use of exogenous activators of one or the other according to the needs of a particular system is readily accomplished.
    Type: Grant
    Filed: October 6, 2000
    Date of Patent: September 14, 2004
    Assignee: Hybrigen, Inc.
    Inventors: David N. Edwards, Arlene Leon, David F. Ranney
  • Patent number: 6783985
    Abstract: The present invention provides methods and compositions that enable the experimental determination as to whether any gene in the genome of a diploid pathogenic organism is essential, and whether it is required for virulence or pathogenicity. The methods involve the construction of genetic mutants in which one allele of a specific gene is inactivated while the other allele of the gene is placed under conditional expression. The identification of essential genes and those genes critical to the development of virulent infections, provides a basis for the development of screens for new drugs against such pathogenic organisms. The present invention further provides Candida albicans genes that are demonstrated to be essential and are potential targets for drug screening. The nucleotide sequence of the target genes can be used for various drug discovery purposes, such as expression of the recombinant protein, hybridization assay and construction of nucleic acid arrays.
    Type: Grant
    Filed: February 20, 2001
    Date of Patent: August 31, 2004
    Assignee: Elitra Pharmaceuticals Inc.
    Inventors: Terry Roemer, Bo Jiang, Charles Boone, Howard Bussey