Abstract: A system and method for batch processing or filling prescriptions. Broadly stated, the prescription processing system comprises a packaging subsystem, a sorting subsystem, an optional medical reclamation subsystem, a system controller and prescription input means. The packaging subsystem, sorting subsystem and medical reclamation subsystem are all under the direction of the system controller. The system controller is in communication with prescription input device means, which is typically a plurality of remote terminals located at pharmacies, drug stores and hospitals. The prescription input device transmits prescription orders to the system controller where they are analyzed and sorted according to predetermined criteria to formulate a batch. The prescriptions are then packaged and sorted under the supervision of the system controller.